Wall clock time and date at job start Tue Mar 31 2020 06:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46794 * 2 1 4 4 H 1.08993 * 109.47538 * 54.70786 * 3 2 1 5 5 N 1.46904 * 109.46652 * 294.70471 * 3 2 1 6 6 C 1.46901 * 110.99651 * 156.88802 * 5 3 2 7 7 C 1.53003 * 109.47091 * 176.16512 * 6 5 3 8 8 C 1.52999 * 109.46927 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.47142 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99225 * 359.97438 * 9 8 7 11 11 C 1.37870 * 120.00298 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99669 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00014 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47589 * 59.99711 * 13 11 9 15 15 H 1.48503 * 109.47276 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46885 * 299.99684 * 13 11 9 17 17 C 1.50704 * 109.46996 * 174.70760 * 3 2 1 18 18 C 1.38262 * 119.99728 * 79.99997 * 17 3 2 19 19 C 1.38213 * 119.99720 * 180.02562 * 18 17 3 20 20 C 1.38254 * 119.99930 * 359.95046 * 19 18 17 21 21 C 1.38217 * 120.00194 * 0.02562 * 20 19 18 22 22 N 1.48018 * 119.99816 * 180.02562 * 21 20 19 23 23 O 1.21797 * 120.00618 * 0.02562 * 22 21 20 24 24 O 1.21799 * 119.99478 * 179.97438 * 22 21 20 25 25 C 1.38205 * 120.00085 * 259.72319 * 17 3 2 26 26 H 1.09008 * 109.46716 * 175.56263 * 1 2 3 27 27 H 1.09003 * 109.47291 * 295.55656 * 1 2 3 28 28 H 1.08996 * 109.47171 * 55.56556 * 1 2 3 29 29 H 1.08990 * 109.47165 * 239.99828 * 2 1 3 30 30 H 1.09007 * 109.46984 * 119.99255 * 2 1 3 31 31 H 1.00897 * 111.00375 * 280.84165 * 5 3 2 32 32 H 1.09008 * 109.47117 * 56.16552 * 6 5 3 33 33 H 1.08999 * 109.47135 * 296.16742 * 6 5 3 34 34 H 1.09002 * 109.46822 * 300.00092 * 7 6 5 35 35 H 1.08991 * 109.47069 * 60.00103 * 7 6 5 36 36 H 1.09002 * 109.47149 * 299.99530 * 8 7 6 37 37 H 1.08991 * 109.47458 * 59.99979 * 8 7 6 38 38 H 0.97002 * 119.99445 * 179.97438 * 12 11 9 39 39 H 1.07993 * 120.00051 * 359.97200 * 18 17 3 40 40 H 1.08001 * 119.99881 * 179.97438 * 19 18 17 41 41 H 1.08002 * 120.00350 * 180.02562 * 20 19 18 42 42 H 1.08001 * 119.99813 * 0.02562 * 25 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6013 1.9830 0.8387 5 7 1.6573 2.0971 -1.2583 6 6 1.6211 3.5573 -1.1023 7 6 1.3135 4.2071 -2.4529 8 6 1.2764 5.7280 -2.2905 9 6 0.9728 6.3680 -3.6207 10 1 0.8219 5.7515 -4.4945 11 6 0.8878 7.7403 -3.7220 12 7 1.0711 8.4909 -2.6577 13 14 0.5108 8.5335 -5.3707 14 1 -0.8071 8.0553 -5.8603 15 1 0.4749 10.0097 -5.2131 16 1 1.5655 8.1662 -6.3494 17 6 3.5412 1.4446 0.1311 18 6 4.3322 1.2015 -0.9766 19 6 5.7090 1.2029 -0.8563 20 6 6.2954 1.4484 0.3714 21 6 5.5047 1.6919 1.4786 22 7 6.1326 1.9553 2.7929 23 8 7.3460 1.9579 2.8987 24 8 5.4358 2.1704 3.7684 25 6 4.1275 1.6952 1.3572 26 1 -0.3633 -1.0247 -0.0795 27 1 -0.3634 0.4433 0.9271 28 1 -0.3633 0.5811 -0.8476 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.2766 1.8288 -2.0083 32 1 2.5882 3.9083 -0.7420 33 1 0.8464 3.8269 -0.3845 34 1 2.0883 3.9374 -3.1706 35 1 0.3465 3.8561 -2.8130 36 1 0.5019 5.9980 -1.5726 37 1 2.2436 6.0786 -1.9305 38 1 1.0117 9.4564 -2.7292 39 1 3.8741 1.0097 -1.9356 40 1 6.3269 1.0125 -1.7215 41 1 7.3713 1.4499 0.4654 42 1 3.5097 1.8891 2.2216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178647318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:23 Heat of formation + Delta-G solvation = -1.248720 kcal Electronic energy + Delta-G solvation = -22733.687390 eV Core-core repulsion = 19295.051370 eV Total energy + Delta-G solvation = -3438.636020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.35710 -40.25876 -37.29509 -36.72213 -34.49555 -32.71120 -32.23511 -31.64266 -30.41204 -26.92554 -26.75031 -25.16004 -23.13182 -22.73815 -22.31436 -21.03658 -20.13461 -18.96853 -18.80705 -17.69441 -17.08414 -16.42223 -15.96555 -15.75169 -14.90383 -14.66029 -14.56557 -14.45045 -14.16391 -13.59628 -13.27380 -12.74699 -12.57884 -12.34283 -12.20702 -11.92833 -11.74948 -11.68041 -11.41550 -11.30358 -11.28123 -11.19336 -10.97863 -10.87003 -10.66820 -10.56725 -9.91570 -9.80586 -9.55086 -9.35719 -9.11676 -8.48305 -8.38260 -6.03350 -4.06196 -0.39109 0.59072 1.12365 1.20333 2.94278 3.30463 3.35276 3.37277 3.94206 4.05845 4.14943 4.38898 4.43375 4.51271 4.63970 4.68744 4.94298 5.01003 5.16484 5.30925 5.32414 5.40370 5.42496 5.58525 5.61709 5.72321 5.75527 5.77914 5.85135 5.94190 6.02653 6.18489 6.24289 6.33177 6.58820 6.62919 7.02880 7.11095 7.37346 7.45928 7.62312 7.76208 7.95896 8.38334 9.00661 9.58149 11.07979 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.003346 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.148183 B = 8367.170787 C = 9421.869549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C 0.123 3.877 4 H 0.093 0.907 5 N -0.674 5.674 6 C 0.056 3.944 7 C -0.107 4.107 8 C 0.023 3.977 9 C -0.522 4.522 10 H 0.054 0.946 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.104 4.104 18 C -0.065 4.065 19 C -0.111 4.111 20 C -0.061 4.061 21 C -0.042 4.042 22 N 0.029 4.971 23 O -0.163 6.163 24 O -0.160 6.160 25 C -0.049 4.049 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.337 0.663 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.016 0.984 37 H 0.012 0.988 38 H 0.261 0.739 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.730 -19.529 5.893 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C 0.012 3.988 4 H 0.112 0.888 5 N -0.305 5.305 6 C -0.072 4.072 7 C -0.145 4.145 8 C -0.015 4.015 9 C -0.560 4.560 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.107 4.107 18 C -0.083 4.083 19 C -0.129 4.129 20 C -0.080 4.080 21 C -0.124 4.124 22 N 0.548 4.452 23 O -0.379 6.379 24 O -0.376 6.376 25 C -0.069 4.069 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.157 0.843 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.731 -19.532 5.417 21.064 hybrid contribution 1.089 0.940 -0.453 1.508 sum 6.820 -18.593 4.964 20.417 Atomic orbital electron populations 1.21680 0.94519 1.01233 1.02899 1.21496 0.97245 0.93866 1.01658 1.20802 0.86058 0.96903 0.95051 0.88847 1.60835 1.55799 1.09232 1.04587 1.22223 0.99650 0.84826 1.00521 1.21636 1.00608 0.98882 0.93387 1.19048 0.97068 0.88166 0.97189 1.21193 1.48304 0.91518 0.94984 0.92735 1.25026 0.95382 0.97518 0.96513 1.69955 1.49954 1.04986 1.28577 0.86655 0.78935 0.78179 0.84215 1.20180 1.21264 1.20281 1.20978 0.99056 0.98597 0.92034 1.21498 0.93745 0.93846 0.99215 1.21208 0.95008 0.99825 0.96880 1.21075 1.01533 0.94783 0.90640 1.21146 0.93850 1.13677 0.83775 1.43643 1.00994 0.97605 1.02914 1.94528 0.96418 1.55189 1.91724 1.94549 1.62407 1.51880 1.28753 1.20977 0.91755 0.94724 0.99415 0.93308 0.93155 0.90713 0.91788 0.92077 0.84299 0.95705 0.91078 0.93758 0.92371 0.96530 0.96922 0.92915 0.83901 0.83369 0.83012 0.82984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.85 37.16 0.37 -0.94 16 2 C -0.10 -0.88 5.59 -26.73 -0.15 -1.03 16 3 C 0.12 1.21 2.22 -68.86 -0.15 1.06 16 4 H 0.09 0.98 7.74 -51.93 -0.40 0.57 16 5 N -0.67 -8.02 5.64 -107.94 -0.61 -8.63 16 6 C 0.06 0.88 5.49 -3.82 -0.02 0.85 16 7 C -0.11 -2.08 5.37 -26.73 -0.14 -2.22 16 8 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 9 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 10 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 13 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 17 C -0.10 -1.00 4.57 -104.62 -0.48 -1.48 16 18 C -0.06 -0.54 9.14 -39.58 -0.36 -0.90 16 19 C -0.11 -0.85 10.05 -39.58 -0.40 -1.24 16 20 C -0.06 -0.56 9.56 -39.58 -0.38 -0.94 16 21 C -0.04 -0.47 6.85 -79.95 -0.55 -1.02 16 22 N 0.03 0.39 4.45 33.96 0.15 0.54 16 23 O -0.16 -2.26 18.45 -29.46 -0.54 -2.81 16 24 O -0.16 -2.29 18.45 -29.46 -0.54 -2.83 16 25 C -0.05 -0.52 9.18 -39.59 -0.36 -0.88 16 26 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.79 7.64 -51.93 -0.40 0.39 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.34 3.63 6.35 -39.29 -0.25 3.38 16 32 H 0.02 0.40 7.86 -51.92 -0.41 -0.01 16 33 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 39 H 0.14 0.96 6.51 -52.49 -0.34 0.61 16 40 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 41 H 0.15 1.18 7.61 -52.49 -0.40 0.78 16 42 H 0.15 1.50 7.59 -52.49 -0.40 1.10 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -31.21 357.21 -9.99 -41.20 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.36 Total: -1.51 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -3.18 Total: -21.70 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.28 Total: -34.21 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -1.09 Total: -5.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.21 -9.99 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178647318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.950 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds