Wall clock time and date at job start Tue Mar 31 2020 06:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46794 * 2 1 4 4 H 1.08993 * 109.47538 * 54.70786 * 3 2 1 5 5 N 1.46904 * 109.46652 * 294.70471 * 3 2 1 6 6 C 1.46901 * 110.99651 * 156.88802 * 5 3 2 7 7 C 1.53003 * 109.47091 * 176.16512 * 6 5 3 8 8 C 1.52999 * 109.46927 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.47142 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99225 * 359.97438 * 9 8 7 11 11 C 1.37870 * 120.00298 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99669 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00014 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47589 * 59.99711 * 13 11 9 15 15 H 1.48503 * 109.47276 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46885 * 299.99684 * 13 11 9 17 17 C 1.50704 * 109.46996 * 174.70760 * 3 2 1 18 18 C 1.38262 * 119.99728 * 79.99997 * 17 3 2 19 19 C 1.38213 * 119.99720 * 180.02562 * 18 17 3 20 20 C 1.38254 * 119.99930 * 359.95046 * 19 18 17 21 21 C 1.38217 * 120.00194 * 0.02562 * 20 19 18 22 22 N 1.48018 * 119.99816 * 180.02562 * 21 20 19 23 23 O 1.21797 * 120.00618 * 0.02562 * 22 21 20 24 24 O 1.21799 * 119.99478 * 179.97438 * 22 21 20 25 25 C 1.38205 * 120.00085 * 259.72319 * 17 3 2 26 26 H 1.09008 * 109.46716 * 175.56263 * 1 2 3 27 27 H 1.09003 * 109.47291 * 295.55656 * 1 2 3 28 28 H 1.08996 * 109.47171 * 55.56556 * 1 2 3 29 29 H 1.08990 * 109.47165 * 239.99828 * 2 1 3 30 30 H 1.09007 * 109.46984 * 119.99255 * 2 1 3 31 31 H 1.00897 * 111.00375 * 280.84165 * 5 3 2 32 32 H 1.09008 * 109.47117 * 56.16552 * 6 5 3 33 33 H 1.08999 * 109.47135 * 296.16742 * 6 5 3 34 34 H 1.09002 * 109.46822 * 300.00092 * 7 6 5 35 35 H 1.08991 * 109.47069 * 60.00103 * 7 6 5 36 36 H 1.09002 * 109.47149 * 299.99530 * 8 7 6 37 37 H 1.08991 * 109.47458 * 59.99979 * 8 7 6 38 38 H 0.97002 * 119.99445 * 179.97438 * 12 11 9 39 39 H 1.07993 * 120.00051 * 359.97200 * 18 17 3 40 40 H 1.08001 * 119.99881 * 179.97438 * 19 18 17 41 41 H 1.08002 * 120.00350 * 180.02562 * 20 19 18 42 42 H 1.08001 * 119.99813 * 0.02562 * 25 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6013 1.9830 0.8387 5 7 1.6573 2.0971 -1.2583 6 6 1.6211 3.5573 -1.1023 7 6 1.3135 4.2071 -2.4529 8 6 1.2764 5.7280 -2.2905 9 6 0.9728 6.3680 -3.6207 10 1 0.8219 5.7515 -4.4945 11 6 0.8878 7.7403 -3.7220 12 7 1.0711 8.4909 -2.6577 13 14 0.5108 8.5335 -5.3707 14 1 -0.8071 8.0553 -5.8603 15 1 0.4749 10.0097 -5.2131 16 1 1.5655 8.1662 -6.3494 17 6 3.5412 1.4446 0.1311 18 6 4.3322 1.2015 -0.9766 19 6 5.7090 1.2029 -0.8563 20 6 6.2954 1.4484 0.3714 21 6 5.5047 1.6919 1.4786 22 7 6.1326 1.9553 2.7929 23 8 7.3460 1.9579 2.8987 24 8 5.4358 2.1704 3.7684 25 6 4.1275 1.6952 1.3572 26 1 -0.3633 -1.0247 -0.0795 27 1 -0.3634 0.4433 0.9271 28 1 -0.3633 0.5811 -0.8476 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.2766 1.8288 -2.0083 32 1 2.5882 3.9083 -0.7420 33 1 0.8464 3.8269 -0.3845 34 1 2.0883 3.9374 -3.1706 35 1 0.3465 3.8561 -2.8130 36 1 0.5019 5.9980 -1.5726 37 1 2.2436 6.0786 -1.9305 38 1 1.0117 9.4564 -2.7292 39 1 3.8741 1.0097 -1.9356 40 1 6.3269 1.0125 -1.7215 41 1 7.3713 1.4499 0.4654 42 1 3.5097 1.8891 2.2216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178647318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:22 Heat of formation + Delta-G solvation = -17.874801 kcal Electronic energy + Delta-G solvation = -22734.408351 eV Core-core repulsion = 19295.051370 eV Total energy + Delta-G solvation = -3439.356981 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.33550 -41.04895 -38.25815 -37.75743 -36.08581 -34.37515 -33.03200 -32.40461 -31.88900 -28.35820 -27.68606 -26.43272 -24.27526 -23.74753 -23.36011 -22.15456 -21.50346 -19.87744 -19.79315 -18.69108 -18.50640 -17.78465 -16.92430 -16.70380 -16.48812 -15.76090 -15.65709 -15.52677 -14.99358 -14.62812 -14.31133 -14.16660 -13.58464 -13.51674 -13.43750 -13.20994 -12.95671 -12.79209 -12.74105 -12.49380 -12.39784 -12.38750 -12.26076 -12.17854 -11.97338 -11.69357 -11.54495 -11.38662 -11.11007 -10.63518 -10.55800 -10.20926 -9.51286 -8.20781 -6.32171 -1.30739 -0.11686 0.23451 0.30933 1.40002 1.42825 1.50819 2.21952 2.40388 3.10298 3.12780 3.17891 3.42396 3.72701 3.80120 3.90334 3.95002 4.15185 4.25228 4.30679 4.37840 4.48714 4.60893 4.67700 4.71446 4.73959 4.87186 4.94894 5.02308 5.03194 5.08172 5.13320 5.19074 5.23575 5.33336 5.44626 5.51608 5.60291 5.73932 5.85143 5.96929 6.24838 6.39868 6.43067 6.85523 7.37662 8.90881 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.003346 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.148183 B = 8367.170787 C = 9421.869549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C 0.126 3.874 4 H 0.084 0.916 5 N -0.667 5.667 6 C 0.073 3.927 7 C -0.092 4.092 8 C 0.025 3.975 9 C -0.542 4.542 10 H 0.063 0.937 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.964 3.036 14 H -0.266 1.266 15 H -0.285 1.285 16 H -0.265 1.265 17 C -0.109 4.109 18 C -0.061 4.061 19 C -0.100 4.100 20 C -0.061 4.061 21 C -0.062 4.062 22 N 0.030 4.970 23 O -0.170 6.170 24 O -0.194 6.194 25 C -0.059 4.059 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.348 0.652 32 H 0.017 0.983 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.057 0.943 36 H -0.012 1.012 37 H -0.014 1.014 38 H 0.263 0.737 39 H 0.166 0.834 40 H 0.184 0.816 41 H 0.166 0.834 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.103 -21.159 3.478 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C 0.016 3.984 4 H 0.102 0.898 5 N -0.299 5.299 6 C -0.057 4.057 7 C -0.130 4.130 8 C -0.013 4.013 9 C -0.580 4.580 10 H 0.081 0.919 11 C -0.199 4.199 12 N -0.576 5.576 13 Si 0.789 3.211 14 H -0.191 1.191 15 H -0.211 1.211 16 H -0.190 1.190 17 C -0.112 4.112 18 C -0.079 4.079 19 C -0.118 4.118 20 C -0.081 4.081 21 C -0.145 4.145 22 N 0.545 4.455 23 O -0.386 6.386 24 O -0.403 6.403 25 C -0.079 4.079 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.169 0.831 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.007 0.993 37 H 0.005 0.995 38 H 0.071 0.929 39 H 0.184 0.816 40 H 0.202 0.798 41 H 0.183 0.817 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.081 -21.185 3.036 22.249 hybrid contribution 0.990 1.408 0.256 1.740 sum 7.071 -19.777 3.293 21.259 Atomic orbital electron populations 1.21663 0.94982 1.01665 1.01949 1.21461 0.96706 0.92664 1.02745 1.20778 0.86472 0.97575 0.93589 0.89825 1.60736 1.56580 1.06572 1.05981 1.21849 0.98808 0.87120 0.97883 1.21370 1.01005 0.94841 0.95750 1.18966 0.94486 0.92347 0.95515 1.21685 1.48004 0.92198 0.96155 0.91917 1.26000 0.95087 0.98313 1.00544 1.70101 1.51096 1.05291 1.31087 0.85509 0.79301 0.76960 0.79349 1.19077 1.21081 1.18987 1.20934 0.98816 0.99264 0.92186 1.21851 0.94172 0.92382 0.99520 1.21618 0.95048 0.98027 0.97140 1.21411 1.02239 0.93937 0.90474 1.21347 0.94386 1.15704 0.83030 1.43984 1.00869 0.97023 1.03655 1.94494 0.96917 1.55135 1.92064 1.94537 1.62391 1.53475 1.29936 1.21033 0.91643 0.95223 0.99969 0.92074 0.93568 0.92331 0.90549 0.91066 0.83112 0.96492 0.92108 0.92647 0.92440 0.99316 0.99521 0.92853 0.81643 0.79827 0.81667 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.85 71.98 0.71 -1.67 16 2 C -0.10 -1.43 5.59 30.59 0.17 -1.25 16 3 C 0.13 2.31 2.22 44.17 0.10 2.40 16 4 H 0.08 1.72 7.74 -2.39 -0.02 1.70 16 5 N -0.67 -14.65 5.64 -495.42 -2.79 -17.44 16 6 C 0.07 2.23 5.49 86.30 0.47 2.70 16 7 C -0.09 -3.50 5.37 30.60 0.16 -3.33 16 8 C 0.02 1.27 4.97 29.85 0.15 1.42 16 9 C -0.54 -30.43 9.11 25.60 0.23 -30.19 16 10 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 11 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 12 N -0.94 -57.09 13.29 21.44 0.28 -56.80 16 13 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 14 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 15 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 16 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 17 C -0.11 -1.91 4.57 -19.87 -0.09 -2.00 16 18 C -0.06 -0.82 9.14 22.27 0.20 -0.61 16 19 C -0.10 -1.17 10.05 22.27 0.22 -0.95 16 20 C -0.06 -1.01 9.56 22.27 0.21 -0.79 16 21 C -0.06 -1.37 6.85 36.37 0.25 -1.12 16 22 N 0.03 0.83 4.45 -46.46 -0.21 0.62 16 23 O -0.17 -4.74 18.45 18.89 0.35 -4.39 16 24 O -0.19 -5.82 18.45 18.89 0.35 -5.47 16 25 C -0.06 -1.22 9.18 22.27 0.20 -1.01 16 26 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 1.16 7.64 -2.39 -0.02 1.14 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.35 6.42 6.35 -89.70 -0.57 5.85 16 32 H 0.02 0.55 7.86 -2.38 -0.02 0.53 16 33 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.17 1.47 6.51 -2.91 -0.02 1.45 16 40 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 41 H 0.17 2.21 7.61 -2.91 -0.02 2.19 16 42 H 0.15 3.06 7.59 -2.91 -0.02 3.03 16 Total: -1.00 -68.81 357.21 3.91 -64.90 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.44 Total: 8.88 kcal Atomic # 6 Polarization: -39.52 SS G_CDS: 3.46 Total: -36.06 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -2.72 Total: -73.62 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.70 Total: -9.86 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -68.81 3.91 -64.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178647318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.026 kcal (2) G-P(sol) polarization free energy of solvation -68.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds