Wall clock time and date at job start Tue Mar 31 2020 06:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47694 * 2 1 4 4 H 1.08999 * 109.46783 * 54.65707 * 3 2 1 5 5 N 1.46894 * 109.47588 * 174.66004 * 3 2 1 6 6 C 1.46898 * 111.00051 * 273.37007 * 5 3 2 7 7 C 1.53000 * 109.47378 * 180.61820 * 6 5 3 8 8 C 1.53002 * 109.47466 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47189 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99998 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99989 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99497 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 119.99979 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47248 * 59.99424 * 13 11 9 15 15 H 1.48498 * 109.47229 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47448 * 299.99543 * 13 11 9 17 17 C 1.50700 * 109.46873 * 294.66315 * 3 2 1 18 18 C 1.38255 * 119.99882 * 279.72125 * 17 3 2 19 19 C 1.38213 * 119.99730 * 179.77062 * 18 17 3 20 20 C 1.38248 * 120.00332 * 0.50538 * 19 18 17 21 21 C 1.38214 * 119.99785 * 359.74758 * 20 19 18 22 22 N 1.48020 * 119.99891 * 179.97438 * 21 20 19 23 23 O 1.21805 * 119.99806 * 180.02562 * 22 21 20 24 24 O 1.21802 * 120.00417 * 0.02562 * 22 21 20 25 25 C 1.38213 * 119.99869 * 99.99893 * 17 3 2 26 26 H 1.09002 * 109.46729 * 305.79447 * 1 2 3 27 27 H 1.08998 * 109.47316 * 65.79181 * 1 2 3 28 28 H 1.08996 * 109.47405 * 185.79454 * 1 2 3 29 29 H 1.09003 * 109.46956 * 240.00015 * 2 1 3 30 30 H 1.09002 * 109.47301 * 120.00363 * 2 1 3 31 31 H 1.00902 * 111.00172 * 37.31715 * 5 3 2 32 32 H 1.08999 * 109.47515 * 60.61398 * 6 5 3 33 33 H 1.09003 * 109.47020 * 300.61716 * 6 5 3 34 34 H 1.09003 * 109.46960 * 299.99932 * 7 6 5 35 35 H 1.09005 * 109.47110 * 59.99802 * 7 6 5 36 36 H 1.09003 * 109.47146 * 300.00027 * 8 7 6 37 37 H 1.08992 * 109.46959 * 59.99665 * 8 7 6 38 38 H 0.97008 * 119.99697 * 180.02562 * 12 11 9 39 39 H 1.07998 * 119.99983 * 0.02562 * 18 17 3 40 40 H 1.08006 * 119.99756 * 180.22908 * 19 18 17 41 41 H 1.08006 * 120.00435 * 179.72775 * 20 19 18 42 42 H 1.07998 * 120.00498 * 359.97438 * 25 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6008 1.9831 0.8383 5 7 3.5034 1.4444 0.1289 6 6 3.9076 1.4070 1.5407 7 6 5.4346 1.4258 1.6347 8 6 5.8556 1.3875 3.1052 9 6 7.3596 1.4066 3.1978 10 1 7.9556 1.4420 2.2978 11 6 7.9748 1.3777 4.4314 12 7 7.2489 1.3341 5.5272 13 14 9.8390 1.4007 4.5461 14 1 10.3586 2.6404 3.9149 15 1 10.2476 1.3636 5.9733 16 1 10.3930 0.2168 3.8414 17 6 1.6486 2.1137 -1.2912 18 6 2.3901 1.8936 -2.4372 19 6 2.0282 2.5055 -3.6225 20 6 0.9310 3.3458 -3.6599 21 6 0.1929 3.5698 -2.5130 22 7 -0.9815 4.4700 -2.5529 23 8 -1.6317 4.6678 -1.5421 24 8 -1.2977 5.0128 -3.5964 25 6 0.5517 2.9537 -1.3285 26 1 -0.3633 0.6011 0.8336 27 1 -0.3634 0.4214 -0.9373 28 1 -0.3634 -1.0224 0.1037 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9127 0.6784 -0.3847 32 1 3.5262 0.4971 2.0039 33 1 3.5010 2.2760 2.0581 34 1 5.8411 0.5568 1.1173 35 1 5.8160 2.3358 1.1716 36 1 5.4490 2.2567 3.6223 37 1 5.4741 0.4778 3.5687 38 1 7.6817 1.3141 6.3952 39 1 3.2496 1.2404 -2.4071 40 1 2.6053 2.3307 -4.5186 41 1 0.6509 3.8274 -4.5851 42 1 -0.0251 3.1288 -0.4324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178647325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:30 Heat of formation + Delta-G solvation = -2.606684 kcal Electronic energy + Delta-G solvation = -22481.956942 eV Core-core repulsion = 19043.262036 eV Total energy + Delta-G solvation = -3438.694906 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -42.35338 -40.17679 -37.42699 -36.72930 -34.55205 -32.80188 -32.22399 -31.37295 -30.64034 -27.02973 -26.68222 -24.90078 -23.09719 -23.00444 -22.37329 -21.08703 -20.27522 -18.86370 -18.73542 -17.69864 -16.94441 -16.42786 -15.90507 -15.77048 -15.22756 -14.76820 -14.55893 -14.36351 -14.03266 -13.71281 -13.22982 -12.70718 -12.60659 -12.48229 -12.21810 -12.01601 -11.75560 -11.71147 -11.56394 -11.45183 -11.31787 -11.28771 -11.05551 -10.87565 -10.67047 -10.58364 -9.84405 -9.79424 -9.54106 -9.35113 -9.12384 -8.42157 -8.38210 -6.03824 -4.06332 -0.36010 0.64371 1.16134 1.21025 2.99744 3.30389 3.35080 3.37282 3.86066 4.15719 4.25982 4.43687 4.46565 4.55860 4.64306 4.65393 4.76353 4.92664 5.07924 5.21055 5.30579 5.32082 5.38768 5.48441 5.62040 5.67171 5.68614 5.74099 5.80426 5.89024 5.91762 6.03373 6.19388 6.26673 6.59351 6.62164 7.03623 7.10634 7.36956 7.45335 7.62334 7.76493 7.95750 8.38483 9.00531 9.57913 11.07546 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023415 B = 0.002583 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.521804 B =10837.534150 C =11021.554678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.150 4.150 3 C 0.121 3.879 4 H 0.093 0.907 5 N -0.684 5.684 6 C 0.059 3.941 7 C -0.107 4.107 8 C 0.023 3.977 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.054 4.054 18 C -0.046 4.046 19 C -0.118 4.118 20 C -0.064 4.064 21 C -0.045 4.045 22 N 0.030 4.970 23 O -0.162 6.162 24 O -0.166 6.166 25 C -0.052 4.052 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.340 0.660 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.014 0.986 38 H 0.261 0.739 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.519 -1.388 -17.818 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.189 4.189 3 C 0.010 3.990 4 H 0.111 0.889 5 N -0.313 5.313 6 C -0.069 4.069 7 C -0.145 4.145 8 C -0.015 4.015 9 C -0.560 4.560 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.535 5.535 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.056 4.056 18 C -0.064 4.064 19 C -0.136 4.136 20 C -0.083 4.083 21 C -0.128 4.128 22 N 0.549 4.451 23 O -0.378 6.378 24 O -0.381 6.381 25 C -0.072 4.072 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.158 0.842 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.071 0.929 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.871 -1.128 -17.633 22.463 hybrid contribution 0.529 -0.620 0.388 0.903 sum -13.342 -1.748 -17.245 21.874 Atomic orbital electron populations 1.21761 0.95207 1.02075 1.01897 1.22263 0.97068 0.96583 1.02952 1.20588 0.89993 0.94626 0.93752 0.88862 1.60655 1.05618 1.50973 1.14094 1.22203 0.98545 1.00129 0.86011 1.21627 0.91042 1.00793 1.01000 1.19052 0.96077 0.97127 0.89232 1.21201 0.91943 1.50647 0.92166 0.92742 1.25028 0.98242 0.95304 0.95900 1.69953 1.35293 1.50702 0.97583 0.86652 0.85761 0.78629 0.76925 1.20207 1.21276 1.20263 1.19885 0.93290 0.96042 0.96380 1.21473 0.97543 0.96137 0.91256 1.21222 0.96276 0.96863 0.99269 1.21031 0.93623 0.96434 0.97188 1.21051 0.92179 1.01562 0.98003 1.43663 1.01455 0.99763 1.00214 1.94549 1.51744 1.66916 1.24599 1.94524 1.73412 1.49972 1.20213 1.20903 0.96271 0.93321 0.96671 0.92255 0.92931 0.92424 0.91497 0.90681 0.84208 0.95249 0.91233 0.93598 0.92525 0.96575 0.96798 0.92922 0.83932 0.83613 0.83245 0.83194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.49 37.16 0.35 -0.84 16 2 C -0.15 -1.27 5.37 -26.73 -0.14 -1.41 16 3 C 0.12 1.18 2.27 -68.87 -0.16 1.02 16 4 H 0.09 0.97 7.63 -51.93 -0.40 0.57 16 5 N -0.68 -8.09 5.67 -107.96 -0.61 -8.70 16 6 C 0.06 0.90 5.48 -3.82 -0.02 0.88 16 7 C -0.11 -2.05 5.42 -26.73 -0.14 -2.20 16 8 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 9 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 10 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 13 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.05 -0.50 4.26 -104.62 -0.45 -0.94 16 18 C -0.05 -0.36 9.33 -39.58 -0.37 -0.73 16 19 C -0.12 -0.81 10.05 -39.59 -0.40 -1.21 16 20 C -0.06 -0.53 9.56 -39.59 -0.38 -0.91 16 21 C -0.05 -0.47 6.85 -79.95 -0.55 -1.02 16 22 N 0.03 0.39 4.45 33.96 0.15 0.54 16 23 O -0.16 -2.21 18.45 -29.46 -0.54 -2.75 16 24 O -0.17 -2.18 18.45 -29.46 -0.54 -2.72 16 25 C -0.05 -0.51 8.45 -39.58 -0.33 -0.85 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.42 7.13 -51.93 -0.37 0.04 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.71 7.47 -51.93 -0.39 0.32 16 31 H 0.34 3.56 7.89 -39.29 -0.31 3.25 16 32 H 0.03 0.44 7.48 -51.93 -0.39 0.05 16 33 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.14 0.94 7.29 -52.49 -0.38 0.55 16 40 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 41 H 0.15 1.04 7.61 -52.48 -0.40 0.64 16 42 H 0.15 1.40 7.59 -52.49 -0.40 1.00 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -31.01 356.47 -9.97 -40.98 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.37 Total: -2.07 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -3.14 Total: -21.11 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.28 Total: -34.11 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -1.09 Total: -5.47 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.01 -9.97 -40.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178647325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.370 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds