Wall clock time and date at job start Tue Mar 31 2020 06:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47694 * 2 1 4 4 H 1.08999 * 109.46783 * 54.65707 * 3 2 1 5 5 N 1.46894 * 109.47588 * 174.66004 * 3 2 1 6 6 C 1.46898 * 111.00051 * 273.37007 * 5 3 2 7 7 C 1.53000 * 109.47378 * 180.61820 * 6 5 3 8 8 C 1.53002 * 109.47466 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47189 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99998 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99989 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99497 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 119.99979 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47248 * 59.99424 * 13 11 9 15 15 H 1.48498 * 109.47229 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47448 * 299.99543 * 13 11 9 17 17 C 1.50700 * 109.46873 * 294.66315 * 3 2 1 18 18 C 1.38255 * 119.99882 * 279.72125 * 17 3 2 19 19 C 1.38213 * 119.99730 * 179.77062 * 18 17 3 20 20 C 1.38248 * 120.00332 * 0.50538 * 19 18 17 21 21 C 1.38214 * 119.99785 * 359.74758 * 20 19 18 22 22 N 1.48020 * 119.99891 * 179.97438 * 21 20 19 23 23 O 1.21805 * 119.99806 * 180.02562 * 22 21 20 24 24 O 1.21802 * 120.00417 * 0.02562 * 22 21 20 25 25 C 1.38213 * 119.99869 * 99.99893 * 17 3 2 26 26 H 1.09002 * 109.46729 * 305.79447 * 1 2 3 27 27 H 1.08998 * 109.47316 * 65.79181 * 1 2 3 28 28 H 1.08996 * 109.47405 * 185.79454 * 1 2 3 29 29 H 1.09003 * 109.46956 * 240.00015 * 2 1 3 30 30 H 1.09002 * 109.47301 * 120.00363 * 2 1 3 31 31 H 1.00902 * 111.00172 * 37.31715 * 5 3 2 32 32 H 1.08999 * 109.47515 * 60.61398 * 6 5 3 33 33 H 1.09003 * 109.47020 * 300.61716 * 6 5 3 34 34 H 1.09003 * 109.46960 * 299.99932 * 7 6 5 35 35 H 1.09005 * 109.47110 * 59.99802 * 7 6 5 36 36 H 1.09003 * 109.47146 * 300.00027 * 8 7 6 37 37 H 1.08992 * 109.46959 * 59.99665 * 8 7 6 38 38 H 0.97008 * 119.99697 * 180.02562 * 12 11 9 39 39 H 1.07998 * 119.99983 * 0.02562 * 18 17 3 40 40 H 1.08006 * 119.99756 * 180.22908 * 19 18 17 41 41 H 1.08006 * 120.00435 * 179.72775 * 20 19 18 42 42 H 1.07998 * 120.00498 * 359.97438 * 25 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6008 1.9831 0.8383 5 7 3.5034 1.4444 0.1289 6 6 3.9076 1.4070 1.5407 7 6 5.4346 1.4258 1.6347 8 6 5.8556 1.3875 3.1052 9 6 7.3596 1.4066 3.1978 10 1 7.9556 1.4420 2.2978 11 6 7.9748 1.3777 4.4314 12 7 7.2489 1.3341 5.5272 13 14 9.8390 1.4007 4.5461 14 1 10.3586 2.6404 3.9149 15 1 10.2476 1.3636 5.9733 16 1 10.3930 0.2168 3.8414 17 6 1.6486 2.1137 -1.2912 18 6 2.3901 1.8936 -2.4372 19 6 2.0282 2.5055 -3.6225 20 6 0.9310 3.3458 -3.6599 21 6 0.1929 3.5698 -2.5130 22 7 -0.9815 4.4700 -2.5529 23 8 -1.6317 4.6678 -1.5421 24 8 -1.2977 5.0128 -3.5964 25 6 0.5517 2.9537 -1.3285 26 1 -0.3633 0.6011 0.8336 27 1 -0.3634 0.4214 -0.9373 28 1 -0.3634 -1.0224 0.1037 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9127 0.6784 -0.3847 32 1 3.5262 0.4971 2.0039 33 1 3.5010 2.2760 2.0581 34 1 5.8411 0.5568 1.1173 35 1 5.8160 2.3358 1.1716 36 1 5.4490 2.2567 3.6223 37 1 5.4741 0.4778 3.5687 38 1 7.6817 1.3141 6.3952 39 1 3.2496 1.2404 -2.4071 40 1 2.6053 2.3307 -4.5186 41 1 0.6509 3.8274 -4.5851 42 1 -0.0251 3.1288 -0.4324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178647325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:26 Heat of formation + Delta-G solvation = -19.170163 kcal Electronic energy + Delta-G solvation = -22482.675188 eV Core-core repulsion = 19043.262036 eV Total energy + Delta-G solvation = -3439.413152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -43.26549 -40.91356 -38.35912 -37.69706 -36.08954 -34.44032 -32.95032 -32.20421 -31.98781 -28.48144 -27.58221 -26.18098 -24.10727 -23.75598 -23.60087 -22.08294 -21.71884 -19.77335 -19.60895 -18.62491 -18.49559 -17.57316 -16.80175 -16.73242 -16.50255 -16.15900 -15.59196 -15.14026 -15.08038 -14.74862 -14.31927 -13.91090 -13.67662 -13.55809 -13.39947 -13.15854 -12.93901 -12.77251 -12.67037 -12.53298 -12.45930 -12.33532 -12.32763 -12.28908 -12.10900 -11.77027 -11.51517 -11.37493 -11.12076 -10.54630 -10.50758 -10.15336 -9.40704 -8.20152 -6.30985 -1.22326 -0.00587 0.33654 0.37922 1.40317 1.43018 1.50927 2.32541 2.40993 3.00300 3.13346 3.45450 3.51293 3.80073 3.87826 3.94549 4.00414 4.07357 4.22875 4.25192 4.39184 4.42828 4.52297 4.67884 4.71816 4.74922 4.84602 4.96740 5.03392 5.05918 5.08562 5.10864 5.17407 5.25363 5.25926 5.32421 5.52901 5.55424 5.76558 5.86941 5.97196 6.26590 6.44976 6.45736 6.86675 7.38460 8.91484 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023415 B = 0.002583 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.521804 B =10837.534150 C =11021.554678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.125 3.875 4 H 0.082 0.918 5 N -0.680 5.680 6 C 0.074 3.926 7 C -0.091 4.091 8 C 0.024 3.976 9 C -0.543 4.543 10 H 0.061 0.939 11 C -0.002 4.002 12 N -0.934 5.934 13 Si 0.964 3.036 14 H -0.268 1.268 15 H -0.285 1.285 16 H -0.265 1.265 17 C -0.061 4.061 18 C -0.042 4.042 19 C -0.105 4.105 20 C -0.061 4.061 21 C -0.063 4.063 22 N 0.032 4.968 23 O -0.198 6.198 24 O -0.171 6.171 25 C -0.059 4.059 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.351 0.649 32 H 0.031 0.969 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.051 0.949 36 H -0.012 1.012 37 H -0.008 1.008 38 H 0.263 0.737 39 H 0.162 0.838 40 H 0.183 0.817 41 H 0.165 0.835 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 -2.277 -20.146 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C 0.015 3.985 4 H 0.100 0.900 5 N -0.311 5.311 6 C -0.055 4.055 7 C -0.129 4.129 8 C -0.013 4.013 9 C -0.581 4.581 10 H 0.079 0.921 11 C -0.199 4.199 12 N -0.575 5.575 13 Si 0.788 3.212 14 H -0.193 1.193 15 H -0.210 1.210 16 H -0.190 1.190 17 C -0.062 4.062 18 C -0.060 4.060 19 C -0.123 4.123 20 C -0.080 4.080 21 C -0.146 4.146 22 N 0.546 4.454 23 O -0.407 6.407 24 O -0.387 6.387 25 C -0.079 4.079 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.171 0.829 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.006 0.994 37 H 0.010 0.990 38 H 0.072 0.928 39 H 0.179 0.821 40 H 0.200 0.800 41 H 0.182 0.818 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.478 -2.015 -19.943 23.611 hybrid contribution 0.105 -0.371 1.051 1.120 sum -12.373 -2.387 -18.892 22.709 Atomic orbital electron populations 1.21735 0.94813 1.02423 1.01750 1.22197 0.97339 0.95504 1.03213 1.20526 0.88447 0.95551 0.94005 0.89998 1.60506 1.07148 1.51718 1.11737 1.21842 0.95654 0.99774 0.88248 1.21356 0.93862 1.00917 0.96783 1.18970 0.94943 0.94675 0.92744 1.21695 0.93511 1.50316 0.92573 0.92099 1.25986 1.03598 0.94812 0.95548 1.70090 1.37497 1.51720 0.98178 0.85524 0.79382 0.79225 0.77073 1.19274 1.21006 1.18971 1.19788 0.93522 0.96316 0.96581 1.21784 0.97455 0.95808 0.90942 1.21610 0.95384 0.95146 1.00144 1.21364 0.93480 0.96299 0.96885 1.21233 0.91984 1.02159 0.99247 1.44000 1.01878 0.99758 0.99784 1.94541 1.53053 1.68224 1.24907 1.94489 1.73765 1.50268 1.20221 1.20905 0.96744 0.93711 0.96529 0.92739 0.92880 0.91726 0.89964 0.91613 0.82899 0.95099 0.92370 0.92577 0.92997 0.99361 0.98983 0.92819 0.82072 0.80016 0.81792 0.83731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.49 71.98 0.68 -1.50 16 2 C -0.14 -2.20 5.37 30.59 0.16 -2.03 16 3 C 0.12 2.27 2.27 44.17 0.10 2.38 16 4 H 0.08 1.69 7.63 -2.39 -0.02 1.68 16 5 N -0.68 -14.86 5.67 -495.46 -2.81 -17.67 16 6 C 0.07 2.21 5.48 86.30 0.47 2.68 16 7 C -0.09 -3.47 5.42 30.59 0.17 -3.30 16 8 C 0.02 1.25 4.97 29.85 0.15 1.39 16 9 C -0.54 -30.40 9.11 25.60 0.23 -30.16 16 10 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 11 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 12 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 13 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 17 C -0.06 -1.00 4.26 -19.87 -0.08 -1.08 16 18 C -0.04 -0.51 9.33 22.27 0.21 -0.30 16 19 C -0.10 -1.03 10.05 22.27 0.22 -0.80 16 20 C -0.06 -0.87 9.56 22.27 0.21 -0.65 16 21 C -0.06 -1.27 6.85 36.37 0.25 -1.02 16 22 N 0.03 0.82 4.45 -46.46 -0.21 0.61 16 23 O -0.20 -5.64 18.45 18.88 0.35 -5.29 16 24 O -0.17 -4.44 18.45 18.88 0.35 -4.09 16 25 C -0.06 -1.13 8.45 22.27 0.19 -0.94 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.78 7.13 -2.39 -0.02 0.76 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.15 7.47 -2.39 -0.02 1.13 16 31 H 0.35 6.36 7.89 -89.69 -0.71 5.65 16 32 H 0.03 0.92 7.48 -2.39 -0.02 0.90 16 33 H 0.06 1.88 8.04 -2.39 -0.02 1.86 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 36 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 39 H 0.16 1.40 7.29 -2.91 -0.02 1.38 16 40 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 41 H 0.16 1.83 7.61 -2.91 -0.02 1.80 16 42 H 0.14 2.82 7.59 -2.91 -0.02 2.80 16 Total: -1.00 -68.03 356.47 3.72 -64.31 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.30 Total: 7.73 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 3.43 Total: -35.00 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -2.73 Total: -73.35 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.70 Total: -9.39 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -68.03 3.72 -64.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178647325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.139 kcal (2) G-P(sol) polarization free energy of solvation -68.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds