Wall clock time and date at job start Tue Mar 31 2020 07:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47039 * 2 1 4 4 H 1.09000 * 109.47342 * 54.99484 * 3 2 1 5 5 C 1.52999 * 109.47178 * 175.00109 * 3 2 1 6 6 O 1.42910 * 109.47057 * 295.00073 * 3 2 1 7 7 C 1.35680 * 116.99642 * 149.99866 * 6 3 2 8 8 C 1.38902 * 119.61810 * 180.29699 * 7 6 3 9 9 C 1.39569 * 118.94435 * 180.22677 * 8 7 6 10 10 C 1.48162 * 120.89156 * 179.75602 * 9 8 7 11 11 O 1.21509 * 120.00074 * 359.72473 * 10 9 8 12 12 N 1.34781 * 120.00102 * 179.72072 * 10 9 8 13 13 C 1.46499 * 119.99874 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47391 * 325.00213 * 13 12 10 15 15 C 1.53000 * 109.46840 * 85.00543 * 13 12 10 16 16 C 1.50699 * 109.47060 * 205.00285 * 13 12 10 17 17 H 1.07999 * 120.00019 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00129 * 180.02562 * 16 13 12 19 19 N 1.31519 * 119.99723 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99900 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47112 * 60.00201 * 20 18 16 22 22 H 1.48503 * 109.47000 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46939 * 299.99464 * 20 18 16 24 24 C 1.39967 * 118.21452 * 359.48550 * 9 8 7 25 25 C 1.37974 * 119.14101 * 0.27075 * 24 9 8 26 26 N 1.31915 * 120.97283 * 359.97438 * 25 24 9 27 27 H 1.08997 * 109.47190 * 60.00349 * 1 2 3 28 28 H 1.09005 * 109.46558 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46968 * 299.99659 * 1 2 3 30 30 H 1.09000 * 109.47408 * 240.00040 * 2 1 3 31 31 H 1.08997 * 109.47190 * 119.99651 * 2 1 3 32 32 H 1.08998 * 109.47315 * 60.00231 * 5 3 2 33 33 H 1.09005 * 109.46689 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.47071 * 300.00009 * 5 3 2 35 35 H 1.08000 * 120.52739 * 359.97438 * 8 7 6 36 36 H 0.97002 * 119.99716 * 0.02562 * 12 10 9 37 37 H 1.09004 * 109.46724 * 180.02562 * 15 13 12 38 38 H 1.09001 * 109.47194 * 299.99493 * 15 13 12 39 39 H 1.08992 * 109.47399 * 59.99666 * 15 13 12 40 40 H 0.97003 * 119.99231 * 179.97438 * 19 18 16 41 41 H 1.08008 * 120.43213 * 180.25157 * 24 9 8 42 42 H 1.07995 * 119.51380 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0814 -1.2211 7 6 1.4505 3.4209 -1.1756 8 6 1.0748 4.0962 -2.3299 9 6 0.8657 5.4747 -2.2681 10 6 0.4693 6.2387 -3.4741 11 8 0.3270 5.6663 -4.5364 12 7 0.2665 7.5687 -3.3929 13 6 -0.1248 8.3242 -4.5855 14 1 0.3624 7.8973 -5.4621 15 6 -1.6432 8.2515 -4.7596 16 6 0.2945 9.7632 -4.4286 17 1 0.8021 10.0829 -3.5305 18 6 0.0300 10.6716 -5.4315 19 7 -0.5877 10.2821 -6.5253 20 14 0.5491 12.4554 -5.2366 21 1 2.0227 12.5264 -5.0677 22 1 0.1525 13.2212 -6.4456 23 1 -0.1148 13.0364 -4.0422 24 6 1.0348 6.1151 -1.0351 25 6 1.4046 5.3685 0.0646 26 7 1.5986 4.0673 -0.0323 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9995 0.9054 -0.7161 33 1 3.9281 2.4721 0.1252 34 1 3.8532 0.9571 1.0571 35 1 0.9506 3.5636 -3.2612 36 1 0.3805 8.0258 -2.5449 37 1 -1.9343 8.8132 -5.6473 38 1 -1.9464 7.2107 -4.8732 39 1 -2.1303 8.6783 -3.8830 40 1 -0.7741 10.9214 -7.2307 41 1 0.8783 7.1801 -0.9457 42 1 1.5372 5.8565 1.0188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180189651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:01 Heat of formation + Delta-G solvation = -53.176270 kcal Electronic energy + Delta-G solvation = -22869.084923 eV Core-core repulsion = 19428.197155 eV Total energy + Delta-G solvation = -3440.887768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.81604 -39.16691 -37.97793 -34.93429 -34.42377 -32.83946 -32.17643 -30.59385 -29.88743 -28.85964 -25.33573 -24.91089 -24.03118 -23.22016 -21.87193 -20.71312 -19.73024 -18.72388 -17.27278 -16.62396 -15.98939 -15.83522 -15.31429 -15.24233 -14.81446 -14.44083 -14.25867 -14.16256 -13.93761 -13.73543 -13.37973 -13.10437 -12.73010 -12.50223 -12.12589 -11.99881 -11.87324 -11.74780 -11.35343 -11.15041 -11.00719 -10.95796 -10.84576 -10.80158 -10.39267 -10.27640 -9.85939 -9.79796 -9.24610 -9.10863 -8.60418 -8.54232 -8.03167 -6.16519 -4.26509 0.84685 1.14363 2.86119 3.23261 3.28560 3.29190 3.30664 3.87708 4.02454 4.20505 4.32788 4.49105 4.71170 4.82332 4.88004 5.02511 5.10362 5.14374 5.16020 5.19833 5.32195 5.35032 5.51427 5.66372 5.68721 5.72446 5.81817 5.90009 5.93714 6.05533 6.16127 6.34124 6.77421 6.90523 7.08181 7.21073 7.33522 7.47827 7.63030 7.75758 7.84703 8.08846 8.52585 8.69524 8.95762 9.40754 10.89481 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033948 B = 0.002920 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.593441 B = 9586.511003 C = 9977.371626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.085 3.915 4 H 0.090 0.910 5 C -0.169 4.169 6 O -0.298 6.298 7 C 0.318 3.682 8 C -0.139 4.139 9 C -0.040 4.040 10 C 0.541 3.459 11 O -0.540 6.540 12 N -0.695 5.695 13 C 0.264 3.736 14 H 0.051 0.949 15 C -0.148 4.148 16 C -0.537 4.537 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.883 5.883 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.276 1.276 24 C -0.184 4.184 25 C 0.134 3.866 26 N -0.533 5.533 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.152 0.848 36 H 0.390 0.610 37 H 0.092 0.908 38 H 0.016 0.984 39 H 0.028 0.972 40 H 0.266 0.734 41 H 0.143 0.857 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.143 -14.616 15.725 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.108 0.892 5 C -0.227 4.227 6 O -0.205 6.205 7 C 0.139 3.861 8 C -0.160 4.160 9 C -0.051 4.051 10 C 0.325 3.675 11 O -0.419 6.419 12 N -0.343 5.343 13 C 0.163 3.837 14 H 0.069 0.931 15 C -0.207 4.207 16 C -0.575 4.575 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.204 4.204 25 C -0.022 4.022 26 N -0.258 5.258 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.224 0.776 37 H 0.111 0.889 38 H 0.035 0.965 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.161 0.839 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.176 -15.574 15.244 22.189 hybrid contribution 0.146 1.758 -0.003 1.764 sum 4.323 -13.816 15.241 21.020 Atomic orbital electron populations 1.21765 0.95188 1.01769 1.02444 1.21688 0.96833 0.94335 1.03024 1.22403 0.95164 0.93059 0.86497 0.89230 1.22216 0.95146 1.02966 1.02331 1.86308 1.82498 1.15967 1.35762 1.19614 0.92304 0.84652 0.89488 1.21153 1.02841 0.93353 0.98689 1.20533 0.96377 0.93436 0.94737 1.18088 0.78988 0.83222 0.87242 1.90745 1.52356 1.69449 1.29320 1.46507 1.66527 1.06359 1.14861 1.18834 0.92295 0.89978 0.82626 0.93078 1.22090 0.97961 0.98087 1.02524 1.21152 1.39413 0.92793 1.04165 0.92026 1.24887 0.94676 0.99190 0.94883 1.69893 1.40127 1.35132 1.06817 0.86481 0.79044 0.83815 0.77609 1.20138 1.21086 1.20109 1.22230 1.03428 1.01960 0.92832 1.22302 0.93521 0.87733 0.98594 1.67090 1.20403 1.11765 1.26537 0.91992 0.92504 0.92808 0.90921 0.90148 0.91981 0.91891 0.91229 0.83040 0.77640 0.88943 0.96532 0.95316 0.92418 0.83907 0.81993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.81 37.16 0.36 -0.94 16 2 C -0.12 -0.98 5.64 -26.73 -0.15 -1.13 16 3 C 0.09 0.86 2.49 -26.73 -0.07 0.80 16 4 H 0.09 0.95 6.98 -51.93 -0.36 0.59 16 5 C -0.17 -1.52 9.53 37.16 0.35 -1.17 16 6 O -0.30 -3.90 9.30 -18.74 -0.17 -4.08 16 7 C 0.32 4.52 7.45 -17.16 -0.13 4.39 16 8 C -0.14 -2.18 9.61 -38.84 -0.37 -2.55 16 9 C -0.04 -0.65 5.91 -104.68 -0.62 -1.27 16 10 C 0.54 11.03 7.76 -12.18 -0.09 10.93 16 11 O -0.54 -13.04 16.10 5.36 0.09 -12.96 16 12 N -0.69 -14.31 5.03 -55.78 -0.28 -14.59 16 13 C 0.26 6.63 2.56 -69.08 -0.18 6.45 16 14 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 15 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 16 C -0.54 -13.97 8.73 -34.44 -0.30 -14.27 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 19 N -0.88 -24.56 11.32 55.43 0.63 -23.94 16 20 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 24 C -0.18 -2.36 9.61 -39.03 -0.38 -2.73 16 25 C 0.13 1.52 11.17 -17.61 -0.20 1.32 16 26 N -0.53 -6.91 8.61 -13.38 -0.12 -7.03 16 27 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.15 2.45 7.74 -52.49 -0.41 2.05 16 36 H 0.39 6.79 6.68 -40.82 -0.27 6.52 16 37 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.14 1.54 6.53 -52.48 -0.34 1.20 16 42 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 352.83 15.07 5.32 5.32 Total: -1.00 -30.56 352.83 -7.34 -37.90 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.27 Total: 5.86 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.51 Total: -1.78 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.23 Total: -45.55 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.09 Total: -17.03 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.56 -7.34 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180189651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.280 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds