Wall clock time and date at job start Tue Mar 31 2020 07:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47039 * 2 1 4 4 H 1.09000 * 109.47342 * 54.99484 * 3 2 1 5 5 C 1.52999 * 109.47178 * 175.00109 * 3 2 1 6 6 O 1.42910 * 109.47057 * 295.00073 * 3 2 1 7 7 C 1.35680 * 116.99642 * 149.99866 * 6 3 2 8 8 C 1.38902 * 119.61810 * 180.29699 * 7 6 3 9 9 C 1.39569 * 118.94435 * 180.22677 * 8 7 6 10 10 C 1.48162 * 120.89156 * 179.75602 * 9 8 7 11 11 O 1.21509 * 120.00074 * 359.72473 * 10 9 8 12 12 N 1.34781 * 120.00102 * 179.72072 * 10 9 8 13 13 C 1.46499 * 119.99874 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47391 * 325.00213 * 13 12 10 15 15 C 1.53000 * 109.46840 * 85.00543 * 13 12 10 16 16 C 1.50699 * 109.47060 * 205.00285 * 13 12 10 17 17 H 1.07999 * 120.00019 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00129 * 180.02562 * 16 13 12 19 19 N 1.31519 * 119.99723 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99900 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47112 * 60.00201 * 20 18 16 22 22 H 1.48503 * 109.47000 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46939 * 299.99464 * 20 18 16 24 24 C 1.39967 * 118.21452 * 359.48550 * 9 8 7 25 25 C 1.37974 * 119.14101 * 0.27075 * 24 9 8 26 26 N 1.31915 * 120.97283 * 359.97438 * 25 24 9 27 27 H 1.08997 * 109.47190 * 60.00349 * 1 2 3 28 28 H 1.09005 * 109.46558 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46968 * 299.99659 * 1 2 3 30 30 H 1.09000 * 109.47408 * 240.00040 * 2 1 3 31 31 H 1.08997 * 109.47190 * 119.99651 * 2 1 3 32 32 H 1.08998 * 109.47315 * 60.00231 * 5 3 2 33 33 H 1.09005 * 109.46689 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.47071 * 300.00009 * 5 3 2 35 35 H 1.08000 * 120.52739 * 359.97438 * 8 7 6 36 36 H 0.97002 * 119.99716 * 0.02562 * 12 10 9 37 37 H 1.09004 * 109.46724 * 180.02562 * 15 13 12 38 38 H 1.09001 * 109.47194 * 299.99493 * 15 13 12 39 39 H 1.08992 * 109.47399 * 59.99666 * 15 13 12 40 40 H 0.97003 * 119.99231 * 179.97438 * 19 18 16 41 41 H 1.08008 * 120.43213 * 180.25157 * 24 9 8 42 42 H 1.07995 * 119.51380 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0814 -1.2211 7 6 1.4505 3.4209 -1.1756 8 6 1.0748 4.0962 -2.3299 9 6 0.8657 5.4747 -2.2681 10 6 0.4693 6.2387 -3.4741 11 8 0.3270 5.6663 -4.5364 12 7 0.2665 7.5687 -3.3929 13 6 -0.1248 8.3242 -4.5855 14 1 0.3624 7.8973 -5.4621 15 6 -1.6432 8.2515 -4.7596 16 6 0.2945 9.7632 -4.4286 17 1 0.8021 10.0829 -3.5305 18 6 0.0300 10.6716 -5.4315 19 7 -0.5877 10.2821 -6.5253 20 14 0.5491 12.4554 -5.2366 21 1 2.0227 12.5264 -5.0677 22 1 0.1525 13.2212 -6.4456 23 1 -0.1148 13.0364 -4.0422 24 6 1.0348 6.1151 -1.0351 25 6 1.4046 5.3685 0.0646 26 7 1.5986 4.0673 -0.0323 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9995 0.9054 -0.7161 33 1 3.9281 2.4721 0.1252 34 1 3.8532 0.9571 1.0571 35 1 0.9506 3.5636 -3.2612 36 1 0.3805 8.0258 -2.5449 37 1 -1.9343 8.8132 -5.6473 38 1 -1.9464 7.2107 -4.8732 39 1 -2.1303 8.6783 -3.8830 40 1 -0.7741 10.9214 -7.2307 41 1 0.8783 7.1801 -0.9457 42 1 1.5372 5.8565 1.0188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180189651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:00 Heat of formation + Delta-G solvation = -73.576956 kcal Electronic energy + Delta-G solvation = -22869.969563 eV Core-core repulsion = 19428.197155 eV Total energy + Delta-G solvation = -3441.772408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.92824 -40.61465 -39.12964 -36.83163 -35.22902 -34.51728 -33.63496 -31.62805 -30.77290 -30.59095 -27.36695 -26.15785 -24.91911 -24.23465 -23.22900 -21.99869 -21.25256 -20.07167 -18.56161 -18.08987 -17.45611 -16.91437 -16.75545 -16.68009 -16.15722 -15.97687 -15.44332 -15.17460 -14.94459 -14.77072 -14.66028 -14.45753 -14.13040 -13.76432 -13.53578 -13.03069 -13.00198 -12.89415 -12.86479 -12.75020 -12.67746 -12.28389 -12.16589 -12.03182 -11.74957 -11.59373 -11.23040 -11.15056 -11.02130 -10.64662 -10.59197 -9.87452 -9.56472 -8.18163 -6.36298 -0.37819 0.09809 1.46615 1.48818 1.56512 1.84775 1.87978 2.31696 2.51141 2.78939 3.12745 3.26161 3.62096 3.77168 3.92064 3.96680 4.00117 4.07163 4.20775 4.43474 4.58613 4.63479 4.68797 4.69784 4.77253 4.80750 4.89602 5.01707 5.04194 5.04861 5.05977 5.12578 5.22087 5.36745 5.37959 5.38753 5.54241 5.64676 5.85514 6.05884 6.24269 6.68899 6.72220 6.80379 7.25347 7.40888 8.88243 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033948 B = 0.002920 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.593441 B = 9586.511003 C = 9977.371626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.078 3.922 4 H 0.088 0.912 5 C -0.165 4.165 6 O -0.311 6.311 7 C 0.318 3.682 8 C -0.159 4.159 9 C -0.055 4.055 10 C 0.540 3.460 11 O -0.588 6.588 12 N -0.687 5.687 13 C 0.270 3.730 14 H 0.001 0.999 15 C -0.136 4.136 16 C -0.549 4.549 17 H 0.078 0.922 18 C 0.015 3.985 19 N -0.918 5.918 20 Si 0.975 3.025 21 H -0.270 1.270 22 H -0.288 1.288 23 H -0.261 1.261 24 C -0.174 4.174 25 C 0.149 3.851 26 N -0.528 5.528 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.408 0.592 37 H 0.069 0.931 38 H 0.011 0.989 39 H 0.044 0.956 40 H 0.266 0.734 41 H 0.168 0.832 42 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.083 -14.043 19.326 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C 0.022 3.978 4 H 0.106 0.894 5 C -0.222 4.222 6 O -0.219 6.219 7 C 0.140 3.860 8 C -0.181 4.181 9 C -0.066 4.066 10 C 0.326 3.674 11 O -0.470 6.470 12 N -0.336 5.336 13 C 0.167 3.833 14 H 0.019 0.981 15 C -0.194 4.194 16 C -0.587 4.587 17 H 0.096 0.904 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.799 3.201 21 H -0.196 1.196 22 H -0.214 1.214 23 H -0.186 1.186 24 C -0.194 4.194 25 C -0.007 4.007 26 N -0.253 5.253 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.150 0.850 36 H 0.245 0.755 37 H 0.088 0.912 38 H 0.030 0.970 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.185 0.815 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.128 -15.020 18.894 24.675 hybrid contribution -0.128 1.483 -1.066 1.831 sum 5.000 -13.537 17.828 22.936 Atomic orbital electron populations 1.21763 0.95631 1.02403 1.01368 1.21731 0.96408 0.93136 1.04225 1.22709 0.96047 0.93834 0.85190 0.89406 1.22198 0.94099 1.02308 1.03612 1.86303 1.82390 1.15544 1.37665 1.19536 0.92065 0.85193 0.89214 1.21047 1.04585 0.93515 0.98933 1.20140 0.98854 0.93325 0.94262 1.18686 0.77634 0.83012 0.88057 1.90713 1.54272 1.70325 1.31708 1.46182 1.66569 1.06487 1.14389 1.18448 0.91999 0.90200 0.82676 0.98141 1.21922 0.97943 0.97437 1.02142 1.21499 1.39402 0.92939 1.04827 0.90369 1.25823 0.94554 1.03750 0.94443 1.70053 1.41253 1.36600 1.07692 0.85359 0.78772 0.78207 0.77778 1.19556 1.21363 1.18583 1.22500 1.02235 1.03200 0.91511 1.23080 0.90839 0.86964 0.99769 1.67252 1.19917 1.12578 1.25529 0.94360 0.91057 0.92548 0.91130 0.87429 0.92155 0.93344 0.88699 0.84959 0.75475 0.91203 0.97013 0.93665 0.92483 0.81463 0.77241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.81 71.98 0.71 -1.73 16 2 C -0.12 -1.69 5.64 30.60 0.17 -1.52 16 3 C 0.08 1.46 2.49 30.59 0.08 1.54 16 4 H 0.09 1.68 6.98 -2.39 -0.02 1.66 16 5 C -0.16 -2.65 9.53 71.98 0.69 -1.97 16 6 O -0.31 -8.12 9.30 -89.98 -0.84 -8.95 16 7 C 0.32 8.88 7.45 84.80 0.63 9.52 16 8 C -0.16 -5.15 9.61 22.75 0.22 -4.94 16 9 C -0.06 -1.79 5.91 -19.90 -0.12 -1.90 16 10 C 0.54 22.69 7.76 86.88 0.67 23.37 16 11 O -0.59 -30.23 16.10 -3.74 -0.06 -30.29 16 12 N -0.69 -28.46 5.03 -448.68 -2.26 -30.71 16 13 C 0.27 13.93 2.56 44.25 0.11 14.04 16 14 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 15 C -0.14 -6.86 9.26 71.98 0.67 -6.19 16 16 C -0.55 -28.42 8.73 25.60 0.22 -28.20 16 17 H 0.08 3.70 7.74 -2.91 -0.02 3.68 16 18 C 0.01 0.77 5.30 84.65 0.45 1.22 16 19 N -0.92 -52.24 11.32 21.45 0.24 -52.00 16 20 Si 0.97 41.11 29.54 68.60 2.03 43.13 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 24 C -0.17 -4.00 9.61 22.63 0.22 -3.79 16 25 C 0.15 2.83 11.17 84.62 0.94 3.77 16 26 N -0.53 -12.42 8.61 -309.14 -2.66 -15.08 16 27 H 0.04 0.77 7.82 -2.39 -0.02 0.76 16 28 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.13 4.68 7.74 -2.91 -0.02 4.66 16 36 H 0.41 13.60 6.68 -92.71 -0.62 12.98 16 37 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 38 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 41 H 0.17 2.97 6.53 -2.91 -0.02 2.95 16 42 H 0.21 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -69.42 352.83 2.52 -66.91 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.40 Total: 23.78 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 5.66 Total: 3.22 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -4.68 Total: -97.80 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.90 Total: -39.24 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Total: -69.42 2.52 -66.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180189651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.670 kcal (2) G-P(sol) polarization free energy of solvation -69.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds