Wall clock time and date at job start Tue Mar 31 2020 06:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47109 * 2 1 4 4 H 1.08995 * 109.46939 * 305.29052 * 3 2 1 5 5 N 1.46893 * 109.47112 * 65.29526 * 3 2 1 6 6 C 1.46902 * 110.99920 * 205.57015 * 5 3 2 7 7 C 1.50702 * 109.47046 * 185.36591 * 6 5 3 8 8 O 1.21291 * 120.00270 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99676 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99530 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00297 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99822 * 179.97438 * 10 9 7 13 13 N 1.31419 * 119.99788 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00317 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46992 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47172 * 119.99675 * 14 12 10 17 17 H 1.48499 * 109.47213 * 240.00153 * 14 12 10 18 18 C 1.50703 * 109.46993 * 185.29296 * 3 2 1 19 19 C 1.38261 * 119.94443 * 279.72857 * 18 3 2 20 20 C 1.38142 * 120.05353 * 179.72753 * 19 18 3 21 21 C 1.38733 * 119.94652 * 0.54109 * 20 19 18 22 22 O 1.35896 * 120.05964 * 179.74845 * 21 20 19 23 23 C 1.42910 * 116.99898 * 359.97438 * 22 21 20 24 24 C 1.38732 * 119.88548 * 359.72867 * 21 20 19 25 25 C 1.38148 * 119.94508 * 0.02562 * 24 21 20 26 26 H 1.09000 * 109.47104 * 174.06082 * 1 2 3 27 27 H 1.08994 * 109.47076 * 294.06015 * 1 2 3 28 28 H 1.09002 * 109.47058 * 54.06560 * 1 2 3 29 29 H 1.09001 * 109.47094 * 239.99922 * 2 1 3 30 30 H 1.09005 * 109.46934 * 120.00401 * 2 1 3 31 31 H 1.00902 * 110.99858 * 329.51321 * 5 3 2 32 32 H 1.09005 * 109.46836 * 305.36173 * 6 5 3 33 33 H 1.08994 * 109.47282 * 65.35681 * 6 5 3 34 34 H 0.97000 * 120.00332 * 359.97438 * 9 7 6 35 35 H 0.96998 * 119.99630 * 179.97438 * 13 12 10 36 36 H 1.08002 * 119.97477 * 359.97438 * 19 18 3 37 37 H 1.08007 * 120.03084 * 180.27276 * 20 19 18 38 38 H 1.09001 * 109.46546 * 59.99539 * 23 22 21 39 39 H 1.08994 * 109.46973 * 180.02562 * 23 22 21 40 40 H 1.09000 * 109.47002 * 300.00119 * 23 22 21 41 41 H 1.08005 * 120.02696 * 179.97438 * 24 21 20 42 42 H 1.08005 * 119.97169 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9829 -0.8388 5 7 1.6575 2.0971 1.2582 6 6 1.5647 3.5531 1.0870 7 6 1.3009 4.2000 2.4223 8 8 1.1997 3.5155 3.4185 9 7 1.1765 5.5392 2.5094 10 6 0.9360 6.1277 3.7241 11 1 0.8459 5.5182 4.6111 12 6 0.8082 7.5084 3.8141 13 7 0.9184 8.2501 2.7348 14 14 0.4799 8.3102 5.4689 15 1 0.4000 7.2633 6.5191 16 1 1.5832 9.2505 5.7910 17 1 -0.8040 9.0543 5.4124 18 6 3.5413 1.4445 -0.1311 19 6 4.3313 1.2067 0.9785 20 6 5.7076 1.2024 0.8598 21 6 6.2973 1.4481 -0.3718 22 8 7.6511 1.4495 -0.4901 23 6 8.4062 1.1910 0.6954 24 6 5.5025 1.6919 -1.4824 25 6 4.1265 1.6901 -1.3595 26 1 -0.3633 -1.0222 -0.1063 27 1 -0.3633 0.4190 0.9383 28 1 -0.3633 0.6031 -0.8321 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.7923 1.7190 1.6139 32 1 2.5020 3.9314 0.6789 33 1 0.7496 3.7873 0.4024 34 1 1.2571 6.0867 1.7128 35 1 0.8289 9.2139 2.7976 36 1 3.8719 1.0202 1.9380 37 1 6.3243 1.0123 1.7259 38 1 8.1470 0.2060 1.0835 39 1 9.4704 1.2216 0.4621 40 1 8.1769 1.9487 1.4447 41 1 5.9591 1.8838 -2.4422 42 1 3.5073 1.8794 -2.2239 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181829075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:02 Heat of formation + Delta-G solvation = -54.418211 kcal Electronic energy + Delta-G solvation = -22967.556603 eV Core-core repulsion = 19526.614981 eV Total energy + Delta-G solvation = -3440.941622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.16580 -38.62566 -37.77572 -35.95977 -33.89218 -32.18667 -31.14116 -30.97099 -30.34119 -27.70935 -26.62930 -25.03947 -23.66158 -22.62964 -21.86672 -20.11902 -19.18957 -18.12306 -17.84717 -16.47286 -16.02241 -15.78285 -15.73484 -15.07136 -14.93293 -14.47457 -14.24572 -13.88196 -13.72536 -13.65595 -13.36988 -12.83134 -12.77252 -12.64594 -12.41748 -12.19233 -11.97626 -11.53848 -11.50628 -11.32658 -11.08602 -10.99268 -10.87784 -10.77213 -10.55029 -10.32526 -10.19462 -9.48536 -8.88207 -8.43417 -8.01515 -8.00336 -7.92031 -6.38597 -3.79198 1.43602 1.54341 3.18132 3.23964 3.28316 3.35628 3.83582 3.95975 4.13161 4.36714 4.79859 4.85575 4.94131 5.02172 5.03723 5.07178 5.13002 5.24163 5.29297 5.33082 5.35826 5.49251 5.52794 5.63566 5.72177 5.79509 5.86774 5.90036 6.04075 6.08178 6.16722 6.24196 6.33216 6.36064 6.51848 6.77300 6.84146 7.31487 7.40496 7.58221 7.73238 8.10260 8.65358 9.21512 9.58703 10.10425 10.79371 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013728 B = 0.003775 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.068423 B = 7415.906122 C = 8732.906085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.120 4.120 3 C 0.129 3.871 4 H 0.050 0.950 5 N -0.661 5.661 6 C 0.052 3.948 7 C 0.444 3.556 8 O -0.582 6.582 9 N -0.566 5.566 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.928 3.072 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.109 4.109 19 C -0.041 4.041 20 C -0.212 4.212 21 C 0.119 3.881 22 O -0.322 6.322 23 C 0.028 3.972 24 C -0.158 4.158 25 C -0.080 4.080 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.350 0.650 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.392 0.608 35 H 0.270 0.730 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.126 0.874 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.576 -14.491 -9.858 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.158 4.158 3 C 0.019 3.981 4 H 0.068 0.932 5 N -0.295 5.295 6 C -0.081 4.081 7 C 0.229 3.771 8 O -0.466 6.466 9 N -0.203 5.203 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.110 4.110 19 C -0.059 4.059 20 C -0.231 4.231 21 C 0.074 3.926 22 O -0.236 6.236 23 C -0.067 4.067 24 C -0.176 4.176 25 C -0.098 4.098 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.172 0.828 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.225 0.775 35 H 0.080 0.920 36 H 0.154 0.846 37 H 0.142 0.858 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.144 0.856 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.235 -14.693 -9.108 19.148 hybrid contribution -0.804 1.046 0.052 1.320 sum 7.431 -13.647 -9.055 17.985 Atomic orbital electron populations 1.21859 0.95748 1.01844 1.02122 1.21680 0.95626 0.95592 1.02874 1.20391 0.91207 0.94644 0.91852 0.93203 1.60025 1.40213 1.02981 1.26302 1.21691 1.01137 0.88720 0.96541 1.19823 0.84248 0.83062 0.89960 1.90512 1.55717 1.62715 1.37675 1.41877 1.62794 1.04992 1.10598 1.19746 1.45282 0.90296 0.87396 0.87915 1.25254 0.97556 0.96285 0.98905 1.69627 1.50419 1.06182 1.28167 0.85814 0.77813 0.79057 0.81742 1.19239 1.20782 1.20793 1.19774 0.95306 1.02779 0.93164 1.20915 0.91740 0.94056 0.99170 1.21294 0.96435 1.08907 0.96449 1.19043 0.82255 0.97004 0.94280 1.86029 1.15495 1.86645 1.35429 1.23024 0.95796 1.00736 0.87152 1.20281 0.92779 1.07206 0.97370 1.20807 0.93557 0.98291 0.97192 0.92428 0.92163 0.92795 0.91370 0.90815 0.82812 0.89729 0.93929 0.77513 0.91981 0.84593 0.85776 0.92762 0.88522 0.92530 0.85647 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.63 37.16 0.36 -1.20 16 2 C -0.12 -1.28 5.50 -26.73 -0.15 -1.42 16 3 C 0.13 1.64 2.24 -68.87 -0.15 1.49 16 4 H 0.05 0.61 7.71 -51.93 -0.40 0.21 16 5 N -0.66 -10.59 5.07 -109.22 -0.55 -11.14 16 6 C 0.05 0.94 5.93 -4.97 -0.03 0.91 16 7 C 0.44 10.62 7.83 -10.98 -0.09 10.53 16 8 O -0.58 -15.87 15.89 5.55 0.09 -15.78 16 9 N -0.57 -14.59 5.29 -10.96 -0.06 -14.64 16 10 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 11 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 12 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 13 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 14 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 C -0.11 -1.46 4.68 -104.60 -0.49 -1.95 16 19 C -0.04 -0.58 9.32 -39.61 -0.37 -0.95 16 20 C -0.21 -2.82 9.04 -39.43 -0.36 -3.18 16 21 C 0.12 1.58 6.69 -39.22 -0.26 1.32 16 22 O -0.32 -4.00 10.50 -19.41 -0.20 -4.20 16 23 C 0.03 0.25 9.81 101.05 0.99 1.24 16 24 C -0.16 -1.98 9.99 -39.43 -0.39 -2.37 16 25 C -0.08 -0.97 9.66 -39.60 -0.38 -1.35 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.65 6.65 -51.93 -0.35 0.31 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.35 5.64 6.47 -39.29 -0.25 5.39 16 32 H 0.08 1.51 7.93 -51.93 -0.41 1.09 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.14 2.06 7.70 -52.49 -0.40 1.66 16 37 H 0.12 1.43 6.30 -52.48 -0.33 1.10 16 38 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 41 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.12 1.23 8.03 -52.48 -0.42 0.81 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -31.94 352.57 -7.43 -39.37 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -6.16 Total: 14.01 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.56 Total: -5.01 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.11 Total: -49.95 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.12 Total: -19.99 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.94 -7.43 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181829075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.044 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds