Wall clock time and date at job start Tue Mar 31 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47109 * 2 1 4 4 H 1.08995 * 109.46939 * 305.29052 * 3 2 1 5 5 N 1.46893 * 109.47112 * 65.29526 * 3 2 1 6 6 C 1.46902 * 110.99920 * 205.57015 * 5 3 2 7 7 C 1.50702 * 109.47046 * 185.36591 * 6 5 3 8 8 O 1.21291 * 120.00270 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99676 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99530 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00297 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99822 * 179.97438 * 10 9 7 13 13 N 1.31419 * 119.99788 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00317 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46992 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47172 * 119.99675 * 14 12 10 17 17 H 1.48499 * 109.47213 * 240.00153 * 14 12 10 18 18 C 1.50703 * 109.46993 * 185.29296 * 3 2 1 19 19 C 1.38261 * 119.94443 * 279.72857 * 18 3 2 20 20 C 1.38142 * 120.05353 * 179.72753 * 19 18 3 21 21 C 1.38733 * 119.94652 * 0.54109 * 20 19 18 22 22 O 1.35896 * 120.05964 * 179.74845 * 21 20 19 23 23 C 1.42910 * 116.99898 * 359.97438 * 22 21 20 24 24 C 1.38732 * 119.88548 * 359.72867 * 21 20 19 25 25 C 1.38148 * 119.94508 * 0.02562 * 24 21 20 26 26 H 1.09000 * 109.47104 * 174.06082 * 1 2 3 27 27 H 1.08994 * 109.47076 * 294.06015 * 1 2 3 28 28 H 1.09002 * 109.47058 * 54.06560 * 1 2 3 29 29 H 1.09001 * 109.47094 * 239.99922 * 2 1 3 30 30 H 1.09005 * 109.46934 * 120.00401 * 2 1 3 31 31 H 1.00902 * 110.99858 * 329.51321 * 5 3 2 32 32 H 1.09005 * 109.46836 * 305.36173 * 6 5 3 33 33 H 1.08994 * 109.47282 * 65.35681 * 6 5 3 34 34 H 0.97000 * 120.00332 * 359.97438 * 9 7 6 35 35 H 0.96998 * 119.99630 * 179.97438 * 13 12 10 36 36 H 1.08002 * 119.97477 * 359.97438 * 19 18 3 37 37 H 1.08007 * 120.03084 * 180.27276 * 20 19 18 38 38 H 1.09001 * 109.46546 * 59.99539 * 23 22 21 39 39 H 1.08994 * 109.46973 * 180.02562 * 23 22 21 40 40 H 1.09000 * 109.47002 * 300.00119 * 23 22 21 41 41 H 1.08005 * 120.02696 * 179.97438 * 24 21 20 42 42 H 1.08005 * 119.97169 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9829 -0.8388 5 7 1.6575 2.0971 1.2582 6 6 1.5647 3.5531 1.0870 7 6 1.3009 4.2000 2.4223 8 8 1.1997 3.5155 3.4185 9 7 1.1765 5.5392 2.5094 10 6 0.9360 6.1277 3.7241 11 1 0.8459 5.5182 4.6111 12 6 0.8082 7.5084 3.8141 13 7 0.9184 8.2501 2.7348 14 14 0.4799 8.3102 5.4689 15 1 0.4000 7.2633 6.5191 16 1 1.5832 9.2505 5.7910 17 1 -0.8040 9.0543 5.4124 18 6 3.5413 1.4445 -0.1311 19 6 4.3313 1.2067 0.9785 20 6 5.7076 1.2024 0.8598 21 6 6.2973 1.4481 -0.3718 22 8 7.6511 1.4495 -0.4901 23 6 8.4062 1.1910 0.6954 24 6 5.5025 1.6919 -1.4824 25 6 4.1265 1.6901 -1.3595 26 1 -0.3633 -1.0222 -0.1063 27 1 -0.3633 0.4190 0.9383 28 1 -0.3633 0.6031 -0.8321 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.7923 1.7190 1.6139 32 1 2.5020 3.9314 0.6789 33 1 0.7496 3.7873 0.4024 34 1 1.2571 6.0867 1.7128 35 1 0.8289 9.2139 2.7976 36 1 3.8719 1.0202 1.9380 37 1 6.3243 1.0123 1.7259 38 1 8.1470 0.2060 1.0835 39 1 9.4704 1.2216 0.4621 40 1 8.1769 1.9487 1.4447 41 1 5.9591 1.8838 -2.4422 42 1 3.5073 1.8794 -2.2239 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181829075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:00 Heat of formation + Delta-G solvation = -75.679775 kcal Electronic energy + Delta-G solvation = -22968.478574 eV Core-core repulsion = 19526.614981 eV Total energy + Delta-G solvation = -3441.863593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.15 seconds Orbital eigenvalues (eV) -41.12998 -40.18626 -39.09614 -37.05995 -35.91432 -33.49746 -33.07482 -31.95489 -31.30154 -28.70898 -27.97304 -26.44579 -25.16713 -23.60084 -22.77574 -21.16767 -21.02059 -19.90088 -19.04547 -17.79771 -17.41349 -16.96310 -16.61661 -16.55859 -16.15921 -16.06763 -15.55733 -15.35308 -15.23809 -14.60599 -14.36875 -14.08484 -13.91367 -13.75966 -13.69263 -13.48289 -13.24720 -13.02523 -12.80487 -12.71538 -12.40512 -12.19796 -12.11554 -12.00423 -11.77651 -11.69154 -11.50629 -11.48908 -10.32789 -10.00572 -9.87268 -9.31786 -8.98512 -8.46278 -5.94973 0.45743 0.52973 1.36481 1.41401 1.55798 2.06441 2.29186 2.41418 2.81128 2.97582 3.21025 3.53218 3.92106 3.95453 4.01570 4.10595 4.25244 4.31766 4.34529 4.37211 4.46165 4.49577 4.54453 4.59257 4.60566 4.70248 4.76897 4.83218 4.93029 5.13132 5.18170 5.24010 5.36152 5.41311 5.44120 5.50967 5.68994 5.88566 5.96302 6.18205 6.45381 6.51327 6.60977 7.13353 7.57211 8.12615 8.71521 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013728 B = 0.003775 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.068423 B = 7415.906122 C = 8732.906085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C 0.132 3.868 4 H 0.065 0.935 5 N -0.673 5.673 6 C 0.069 3.931 7 C 0.440 3.560 8 O -0.620 6.620 9 N -0.575 5.575 10 C -0.333 4.333 11 H 0.079 0.921 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.273 1.273 16 H -0.272 1.272 17 H -0.270 1.270 18 C -0.118 4.118 19 C -0.059 4.059 20 C -0.221 4.221 21 C 0.109 3.891 22 O -0.335 6.335 23 C 0.020 3.980 24 C -0.164 4.164 25 C -0.077 4.077 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.349 0.651 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.395 0.605 35 H 0.277 0.723 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.063 0.937 39 H 0.121 0.879 40 H 0.054 0.946 41 H 0.142 0.858 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.749 -14.508 -11.211 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C 0.023 3.977 4 H 0.083 0.917 5 N -0.307 5.307 6 C -0.064 4.064 7 C 0.228 3.772 8 O -0.506 6.506 9 N -0.212 5.212 10 C -0.462 4.462 11 H 0.097 0.903 12 C -0.213 4.213 13 N -0.563 5.563 14 Si 0.816 3.184 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.195 1.195 18 C -0.119 4.119 19 C -0.078 4.078 20 C -0.239 4.239 21 C 0.064 3.936 22 O -0.249 6.249 23 C -0.074 4.074 24 C -0.182 4.182 25 C -0.095 4.095 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.170 0.830 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.229 0.771 35 H 0.087 0.913 36 H 0.136 0.864 37 H 0.151 0.849 38 H 0.081 0.919 39 H 0.140 0.860 40 H 0.072 0.928 41 H 0.160 0.840 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.418 -14.714 -10.490 19.935 hybrid contribution -0.787 0.995 0.455 1.348 sum 7.631 -13.719 -10.035 18.632 Atomic orbital electron populations 1.21839 0.95047 1.02807 1.01615 1.21636 0.96125 0.94175 1.03167 1.20480 0.90982 0.95654 0.90572 0.91716 1.59975 1.40283 1.01808 1.28669 1.21490 1.02182 0.89688 0.92993 1.20861 0.82188 0.82381 0.91774 1.90481 1.56911 1.63406 1.39821 1.41948 1.63437 1.05820 1.10034 1.19704 1.47687 0.91024 0.87796 0.90343 1.26039 0.96596 0.96168 1.02479 1.69687 1.50142 1.06714 1.29718 0.84875 0.78294 0.77899 0.77293 1.19776 1.19695 1.19476 1.19900 0.95521 1.03069 0.93448 1.20877 0.92397 0.95544 0.98949 1.21413 0.96273 1.09079 0.97182 1.19248 0.82922 0.97038 0.94439 1.86013 1.15124 1.86634 1.37112 1.23279 0.96736 1.01130 0.86274 1.20603 0.93098 1.06598 0.97917 1.21073 0.93738 0.97200 0.97474 0.91024 0.93618 0.92043 0.89651 0.91904 0.83009 0.89061 0.91463 0.77114 0.91339 0.86418 0.84880 0.91862 0.86044 0.92780 0.83991 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.63 71.98 0.69 -2.11 16 2 C -0.11 -2.23 5.50 30.59 0.17 -2.06 16 3 C 0.13 3.16 2.24 44.17 0.10 3.26 16 4 H 0.07 1.38 7.71 -2.39 -0.02 1.37 16 5 N -0.67 -21.24 5.07 -499.47 -2.53 -23.77 16 6 C 0.07 2.45 5.93 85.56 0.51 2.95 16 7 C 0.44 21.40 7.83 87.66 0.69 22.08 16 8 O -0.62 -34.79 15.89 -3.06 -0.05 -34.83 16 9 N -0.58 -30.15 5.29 -306.98 -1.62 -31.77 16 10 C -0.33 -19.20 9.68 84.04 0.81 -18.39 16 11 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 12 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 13 N -0.92 -50.42 13.05 21.66 0.28 -50.14 16 14 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 C -0.12 -3.01 4.68 -19.85 -0.09 -3.11 16 19 C -0.06 -1.69 9.32 22.25 0.21 -1.49 16 20 C -0.22 -5.85 9.04 22.37 0.20 -5.64 16 21 C 0.11 2.79 6.69 22.51 0.15 2.94 16 22 O -0.33 -7.94 10.50 -92.38 -0.97 -8.91 16 23 C 0.02 0.33 9.81 113.37 1.11 1.44 16 24 C -0.16 -3.81 9.99 22.37 0.22 -3.59 16 25 C -0.08 -1.69 9.66 22.25 0.22 -1.47 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.04 0.95 6.65 -2.39 -0.02 0.94 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.35 11.21 6.47 -89.69 -0.58 10.63 16 32 H 0.09 3.15 7.93 -2.38 -0.02 3.13 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 35 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 36 H 0.12 3.73 7.70 -2.91 -0.02 3.71 16 37 H 0.13 3.10 6.30 -2.91 -0.02 3.08 16 38 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 39 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 0.90 7.66 -2.39 -0.02 0.88 16 41 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 42 H 0.15 2.45 8.03 -2.91 -0.02 2.43 16 Total: -1.00 -69.10 352.57 2.31 -66.78 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -0.28 Total: 42.60 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 5.45 Total: -5.43 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -3.87 Total: -105.68 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -1.02 Total: -43.74 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.10 2.31 -66.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181829075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.897 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds