Wall clock time and date at job start Tue Mar 31 2020 06:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47044 * 2 1 4 4 H 1.08999 * 109.47297 * 55.00074 * 3 2 1 5 5 C 1.50700 * 109.47256 * 175.00313 * 3 2 1 6 6 H 1.08001 * 120.00051 * 120.00520 * 5 3 2 7 7 C 1.37879 * 119.99794 * 299.99698 * 5 3 2 8 8 N 1.31512 * 120.00038 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99994 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47423 * 89.99378 * 9 7 5 11 11 H 1.48495 * 109.47123 * 209.99716 * 9 7 5 12 12 H 1.48501 * 109.47025 * 329.99356 * 9 7 5 13 13 N 1.46503 * 109.47338 * 295.00567 * 3 2 1 14 14 C 1.34774 * 120.00319 * 84.99752 * 13 3 2 15 15 O 1.21545 * 119.99962 * 359.97438 * 14 13 3 16 16 C 1.47855 * 119.99841 * 179.72539 * 14 13 3 17 17 C 1.39564 * 120.53263 * 359.72437 * 16 14 13 18 18 N 1.31654 * 120.68613 * 179.77044 * 17 16 14 19 19 C 1.31910 * 121.94328 * 0.49536 * 18 17 16 20 20 C 1.38805 * 121.00076 * 359.76848 * 19 18 17 21 21 O 1.35930 * 120.40333 * 179.97438 * 20 19 18 22 22 C 1.42901 * 116.99568 * 185.51485 * 21 20 19 23 23 C 1.53003 * 109.46659 * 155.10411 * 22 21 20 24 24 C 1.52999 * 109.47489 * 275.10273 * 22 21 20 25 25 C 1.38882 * 119.19350 * 359.97438 * 20 19 18 26 26 H 1.08997 * 109.47455 * 60.00213 * 1 2 3 27 27 H 1.08997 * 109.47086 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47516 * 299.99544 * 1 2 3 29 29 H 1.09000 * 109.46788 * 240.00299 * 2 1 3 30 30 H 1.08998 * 109.47197 * 120.00267 * 2 1 3 31 31 H 0.96994 * 120.00494 * 180.02562 * 8 7 5 32 32 H 0.97008 * 119.99836 * 264.99618 * 13 3 2 33 33 H 1.07994 * 119.65798 * 359.97438 * 17 16 14 34 34 H 1.08005 * 119.49699 * 179.74956 * 19 18 17 35 35 H 1.09003 * 109.47292 * 35.10828 * 22 21 20 36 36 H 1.09003 * 109.46928 * 60.00194 * 23 22 21 37 37 H 1.09001 * 109.47432 * 180.02562 * 23 22 21 38 38 H 1.09001 * 109.47319 * 300.00343 * 23 22 21 39 39 H 1.08997 * 109.47042 * 60.00218 * 24 22 21 40 40 H 1.08996 * 109.47001 * 180.02562 * 24 22 21 41 41 H 1.08998 * 109.46860 * 300.00436 * 24 22 21 42 42 H 1.07995 * 120.88310 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8796 1.3357 9 14 3.0964 0.1089 2.5700 10 1 2.8755 -1.3272 2.2633 11 1 3.7937 0.2348 3.8750 12 1 1.7877 0.8074 2.6387 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3414 2.6318 -0.4323 16 6 0.0461 3.3308 -2.6281 17 6 0.9330 3.3843 -3.7044 18 7 0.5882 3.9730 -4.8304 19 6 -0.5920 4.5406 -4.9884 20 6 -1.5301 4.5362 -3.9652 21 8 -2.7425 5.1252 -4.1410 22 6 -3.6055 5.1851 -3.0036 23 6 -4.5819 6.3519 -3.1654 24 6 -4.3894 3.8763 -2.8886 25 6 -1.2148 3.9228 -2.7598 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.8771 0.4812 2.1123 32 1 2.2718 2.1233 -1.9978 33 1 1.9109 2.9354 -3.6139 34 1 -0.8320 5.0161 -5.9280 35 1 -3.0097 5.3322 -2.1027 36 1 -5.1777 6.2048 -4.0662 37 1 -5.2400 6.3980 -2.2976 38 1 -4.0235 7.2844 -3.2473 39 1 -3.6938 3.0451 -2.7734 40 1 -5.0480 3.9223 -2.0213 41 1 -4.9852 3.7293 -3.7895 42 1 -1.9241 3.9031 -1.9457 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183831958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:49 Heat of formation + Delta-G solvation = -42.146935 kcal Electronic energy + Delta-G solvation = -23564.318028 eV Core-core repulsion = 20123.908528 eV Total energy + Delta-G solvation = -3440.409500 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.97980 -39.38032 -38.32767 -35.46126 -33.64532 -32.71000 -32.26542 -31.54694 -30.08929 -27.66150 -27.56987 -24.71003 -23.96969 -22.68064 -21.34898 -21.08747 -19.79922 -18.77981 -17.16003 -16.96436 -16.87045 -16.01225 -15.80683 -15.50787 -14.87682 -14.60336 -14.45467 -14.14346 -13.66691 -13.47130 -13.19785 -12.97903 -12.82420 -12.60201 -12.47030 -12.39942 -12.10558 -11.98503 -11.83760 -11.31845 -11.14293 -11.07593 -10.97466 -10.68559 -10.09738 -9.98370 -9.77427 -9.57587 -9.29989 -9.20337 -8.80375 -8.59378 -8.17528 -6.24603 -4.27853 0.64719 1.11537 2.81975 3.13931 3.20602 3.32707 3.36635 3.68398 3.91515 4.27791 4.34122 4.41597 4.53718 4.57033 4.72081 4.86402 4.92093 5.03727 5.08660 5.21431 5.30683 5.38927 5.43736 5.50775 5.70625 5.83264 5.87592 5.90940 5.96303 5.97292 6.12435 6.21620 6.60178 6.63854 6.76813 6.88919 7.02561 7.16172 7.21986 7.43589 7.77398 8.05567 8.42311 8.67987 8.79156 9.35217 10.87325 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023869 B = 0.003883 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.811392 B = 7209.745500 C = 7902.657415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.051 0.949 5 C -0.538 4.538 6 H 0.082 0.918 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.689 5.689 14 C 0.548 3.452 15 O -0.543 6.543 16 C -0.133 4.133 17 C 0.092 3.908 18 N -0.449 5.449 19 C 0.086 3.914 20 C 0.073 3.927 21 O -0.304 6.304 22 C 0.072 3.928 23 C -0.147 4.147 24 C -0.181 4.181 25 C -0.115 4.115 26 H 0.050 0.950 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.268 0.732 32 H 0.396 0.604 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.152 7.008 -10.217 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.069 0.931 5 C -0.576 4.576 6 H 0.100 0.900 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.337 5.337 14 C 0.332 3.668 15 O -0.422 6.422 16 C -0.139 4.139 17 C -0.066 4.066 18 N -0.157 5.157 19 C -0.072 4.072 20 C 0.025 3.975 21 O -0.217 6.217 22 C 0.016 3.984 23 C -0.204 4.204 24 C -0.239 4.239 25 C -0.142 4.142 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.230 0.770 33 H 0.182 0.818 34 H 0.182 0.818 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.009 7.021 -10.262 21.069 hybrid contribution -0.655 -0.655 1.341 1.630 sum -17.664 6.366 -8.921 20.787 Atomic orbital electron populations 1.21882 0.96984 0.99145 1.02175 1.22296 0.94332 0.99823 1.01326 1.19221 0.95854 0.88554 0.82427 0.93077 1.21028 0.88422 1.40082 1.08022 0.90041 1.24823 0.94868 0.95085 0.97635 1.69859 1.08674 1.44283 1.29830 0.86910 0.80943 0.79989 0.80947 1.20176 1.22106 1.18480 1.46146 1.14274 1.55019 1.18231 1.17952 0.83009 0.79323 0.86482 1.90738 1.51558 1.60189 1.39718 1.21149 0.95224 1.00882 0.96601 1.22982 0.99554 0.96344 0.87742 1.67735 1.16468 1.07581 1.23896 1.22352 0.87742 0.98805 0.98313 1.20043 0.86982 0.95443 0.94999 1.86133 1.23691 1.74314 1.37541 1.22538 0.90888 0.96788 0.88151 1.21846 0.98461 0.96879 1.03202 1.22390 1.01171 0.97135 1.03172 1.21878 0.97482 0.97442 0.97393 0.93058 0.94856 0.92832 0.92118 0.92594 0.92208 0.76968 0.81769 0.81783 0.90552 0.91393 0.90342 0.91555 0.91665 0.90691 0.91348 0.82999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.16 0.32 -2.52 16 2 C -0.14 -3.02 5.11 -26.73 -0.14 -3.15 16 3 C 0.24 5.59 1.83 -69.08 -0.13 5.46 16 4 H 0.05 1.30 6.64 -51.93 -0.34 0.96 16 5 C -0.54 -14.19 9.31 -34.44 -0.32 -14.51 16 6 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 9 Si 0.88 21.33 24.41 -169.99 -4.15 17.18 16 10 H -0.27 -6.44 6.83 56.52 0.39 -6.06 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 13 N -0.69 -13.27 4.98 -55.88 -0.28 -13.55 16 14 C 0.55 10.13 6.35 -12.33 -0.08 10.05 16 15 O -0.54 -11.41 13.55 5.33 0.07 -11.34 16 16 C -0.13 -2.04 5.89 -104.84 -0.62 -2.66 16 17 C 0.09 1.28 10.71 -17.13 -0.18 1.10 16 18 N -0.45 -6.11 10.34 -12.80 -0.13 -6.24 16 19 C 0.09 1.04 11.13 -17.31 -0.19 0.85 16 20 C 0.07 0.90 6.61 -39.13 -0.26 0.64 16 21 O -0.30 -3.34 9.81 -19.52 -0.19 -3.53 16 22 C 0.07 0.65 2.85 -26.73 -0.08 0.58 16 23 C -0.15 -0.99 9.56 37.16 0.36 -0.63 16 24 C -0.18 -1.53 9.19 37.16 0.34 -1.19 16 25 C -0.11 -1.58 7.87 -38.71 -0.30 -1.89 16 26 H 0.05 0.99 5.64 -51.93 -0.29 0.70 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.10 7.84 -51.93 -0.41 0.70 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.28 3.21 -51.93 -0.17 1.11 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.40 6.70 6.60 -40.82 -0.27 6.43 16 33 H 0.17 2.03 6.42 -52.49 -0.34 1.69 16 34 H 0.17 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.08 0.72 6.35 -51.93 -0.33 0.39 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.65 6.92 -51.93 -0.36 0.29 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.15 2.04 5.25 -52.49 -0.28 1.77 16 LS Contribution 334.10 15.07 5.03 5.03 Total: -1.00 -30.78 334.10 -6.02 -36.79 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.77 Total: 6.61 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -1.38 Total: -5.76 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.36 Total: -45.00 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.12 Total: -14.87 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.15 Total: 17.18 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.78 -6.02 -36.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183831958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.352 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds