Wall clock time and date at job start Tue Mar 31 2020 06:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47044 * 2 1 4 4 H 1.08999 * 109.47297 * 55.00074 * 3 2 1 5 5 C 1.50700 * 109.47256 * 175.00313 * 3 2 1 6 6 H 1.08001 * 120.00051 * 120.00520 * 5 3 2 7 7 C 1.37879 * 119.99794 * 299.99698 * 5 3 2 8 8 N 1.31512 * 120.00038 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99994 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47423 * 89.99378 * 9 7 5 11 11 H 1.48495 * 109.47123 * 209.99716 * 9 7 5 12 12 H 1.48501 * 109.47025 * 329.99356 * 9 7 5 13 13 N 1.46503 * 109.47338 * 295.00567 * 3 2 1 14 14 C 1.34774 * 120.00319 * 84.99752 * 13 3 2 15 15 O 1.21545 * 119.99962 * 359.97438 * 14 13 3 16 16 C 1.47855 * 119.99841 * 179.72539 * 14 13 3 17 17 C 1.39564 * 120.53263 * 359.72437 * 16 14 13 18 18 N 1.31654 * 120.68613 * 179.77044 * 17 16 14 19 19 C 1.31910 * 121.94328 * 0.49536 * 18 17 16 20 20 C 1.38805 * 121.00076 * 359.76848 * 19 18 17 21 21 O 1.35930 * 120.40333 * 179.97438 * 20 19 18 22 22 C 1.42901 * 116.99568 * 185.51485 * 21 20 19 23 23 C 1.53003 * 109.46659 * 155.10411 * 22 21 20 24 24 C 1.52999 * 109.47489 * 275.10273 * 22 21 20 25 25 C 1.38882 * 119.19350 * 359.97438 * 20 19 18 26 26 H 1.08997 * 109.47455 * 60.00213 * 1 2 3 27 27 H 1.08997 * 109.47086 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47516 * 299.99544 * 1 2 3 29 29 H 1.09000 * 109.46788 * 240.00299 * 2 1 3 30 30 H 1.08998 * 109.47197 * 120.00267 * 2 1 3 31 31 H 0.96994 * 120.00494 * 180.02562 * 8 7 5 32 32 H 0.97008 * 119.99836 * 264.99618 * 13 3 2 33 33 H 1.07994 * 119.65798 * 359.97438 * 17 16 14 34 34 H 1.08005 * 119.49699 * 179.74956 * 19 18 17 35 35 H 1.09003 * 109.47292 * 35.10828 * 22 21 20 36 36 H 1.09003 * 109.46928 * 60.00194 * 23 22 21 37 37 H 1.09001 * 109.47432 * 180.02562 * 23 22 21 38 38 H 1.09001 * 109.47319 * 300.00343 * 23 22 21 39 39 H 1.08997 * 109.47042 * 60.00218 * 24 22 21 40 40 H 1.08996 * 109.47001 * 180.02562 * 24 22 21 41 41 H 1.08998 * 109.46860 * 300.00436 * 24 22 21 42 42 H 1.07995 * 120.88310 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8796 1.3357 9 14 3.0964 0.1089 2.5700 10 1 2.8755 -1.3272 2.2633 11 1 3.7937 0.2348 3.8750 12 1 1.7877 0.8074 2.6387 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3414 2.6318 -0.4323 16 6 0.0461 3.3308 -2.6281 17 6 0.9330 3.3843 -3.7044 18 7 0.5882 3.9730 -4.8304 19 6 -0.5920 4.5406 -4.9884 20 6 -1.5301 4.5362 -3.9652 21 8 -2.7425 5.1252 -4.1410 22 6 -3.6055 5.1851 -3.0036 23 6 -4.5819 6.3519 -3.1654 24 6 -4.3894 3.8763 -2.8886 25 6 -1.2148 3.9228 -2.7598 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.8771 0.4812 2.1123 32 1 2.2718 2.1233 -1.9978 33 1 1.9109 2.9354 -3.6139 34 1 -0.8320 5.0161 -5.9280 35 1 -3.0097 5.3322 -2.1027 36 1 -5.1777 6.2048 -4.0662 37 1 -5.2400 6.3980 -2.2976 38 1 -4.0235 7.2844 -3.2473 39 1 -3.6938 3.0451 -2.7734 40 1 -5.0480 3.9223 -2.0213 41 1 -4.9852 3.7293 -3.7895 42 1 -1.9241 3.9031 -1.9457 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183831958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:48 Heat of formation + Delta-G solvation = -63.176196 kcal Electronic energy + Delta-G solvation = -23565.229925 eV Core-core repulsion = 20123.908528 eV Total energy + Delta-G solvation = -3441.321397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.04727 -40.70646 -39.39034 -37.18976 -34.56954 -34.30582 -33.78858 -32.95287 -31.19139 -29.42568 -28.23267 -25.98537 -24.96565 -24.47414 -22.60153 -22.17300 -21.37424 -20.04901 -18.73549 -18.09536 -17.90194 -17.58940 -17.18337 -16.62684 -16.32859 -16.15325 -15.43462 -15.27584 -15.05147 -14.89623 -14.58422 -14.17616 -13.91777 -13.77299 -13.69039 -13.52849 -13.34264 -13.12522 -12.99544 -12.85060 -12.78416 -12.42904 -12.03106 -11.86782 -11.78414 -11.49912 -11.27165 -11.25264 -10.90123 -10.86383 -10.56505 -9.88028 -9.54745 -8.38030 -6.44237 -0.47332 0.07667 1.27673 1.35820 1.45117 1.82787 1.97921 2.24106 2.26386 2.73688 2.97776 3.28866 3.50278 3.71546 3.74240 3.83235 3.87039 3.95679 4.10697 4.21814 4.29895 4.34707 4.45619 4.65446 4.72458 4.74521 4.80894 4.84935 4.87125 4.89012 4.99035 5.09561 5.18116 5.20324 5.24071 5.26183 5.37198 5.49618 5.57469 6.10973 6.13187 6.57061 6.71924 6.77137 7.15200 7.31233 8.77041 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023869 B = 0.003883 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.811392 B = 7209.745500 C = 7902.657415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.250 3.750 4 H 0.027 0.973 5 C -0.536 4.536 6 H 0.058 0.942 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.936 3.064 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.258 1.258 13 N -0.690 5.690 14 C 0.552 3.448 15 O -0.570 6.570 16 C -0.150 4.150 17 C 0.093 3.907 18 N -0.459 5.459 19 C 0.096 3.904 20 C 0.079 3.921 21 O -0.303 6.303 22 C 0.064 3.936 23 C -0.143 4.143 24 C -0.179 4.179 25 C -0.116 4.116 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.270 0.730 32 H 0.406 0.594 33 H 0.175 0.825 34 H 0.196 0.804 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.378 7.188 -11.324 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.177 4.177 3 C 0.146 3.854 4 H 0.045 0.955 5 C -0.574 4.574 6 H 0.076 0.924 7 C -0.169 4.169 8 N -0.571 5.571 9 Si 0.763 3.237 10 H -0.185 1.185 11 H -0.221 1.221 12 H -0.183 1.183 13 N -0.339 5.339 14 C 0.339 3.661 15 O -0.452 6.452 16 C -0.155 4.155 17 C -0.064 4.064 18 N -0.167 5.167 19 C -0.063 4.063 20 C 0.031 3.969 21 O -0.216 6.216 22 C 0.009 3.991 23 C -0.200 4.200 24 C -0.236 4.236 25 C -0.143 4.143 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.243 0.757 33 H 0.192 0.808 34 H 0.212 0.788 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.247 7.205 -11.397 23.500 hybrid contribution -0.026 -0.586 1.572 1.677 sum -19.273 6.619 -9.826 22.623 Atomic orbital electron populations 1.21770 0.95228 1.00669 1.01542 1.22219 0.95841 0.98321 1.01287 1.18862 0.93429 0.89752 0.83388 0.95495 1.21268 0.90183 1.38791 1.07124 0.92389 1.25538 0.95728 0.95824 0.99828 1.69970 1.10296 1.45992 1.30867 0.86045 0.79359 0.80009 0.78303 1.18473 1.22124 1.18293 1.45950 1.15150 1.55351 1.17409 1.18316 0.82085 0.78490 0.87248 1.90715 1.52219 1.61179 1.41058 1.20836 0.96462 1.02654 0.95531 1.23098 0.99702 0.96150 0.87491 1.67818 1.17315 1.08064 1.23504 1.22884 0.86906 0.97308 0.99180 1.20046 0.87647 0.94914 0.94311 1.86149 1.23174 1.73782 1.38494 1.22793 0.90955 0.98120 0.87278 1.21865 0.98088 0.95658 1.04351 1.22380 1.00944 0.96043 1.04260 1.21926 0.96898 0.97374 0.98147 0.93004 0.92183 0.94170 0.91170 0.93540 0.92042 0.75737 0.80850 0.78762 0.91288 0.90747 0.88629 0.91576 0.93520 0.89199 0.90604 0.83106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 8.51 71.98 0.61 -4.47 16 2 C -0.14 -5.84 5.11 30.59 0.16 -5.68 16 3 C 0.25 11.57 1.83 44.24 0.08 11.65 16 4 H 0.03 1.39 6.64 -2.39 -0.02 1.38 16 5 C -0.54 -28.75 9.31 25.60 0.24 -28.51 16 6 H 0.06 3.31 7.98 -2.91 -0.02 3.29 16 7 C 0.03 1.72 5.45 84.66 0.46 2.18 16 8 N -0.93 -55.48 13.96 21.45 0.30 -55.18 16 9 Si 0.94 44.06 24.41 68.60 1.67 45.73 16 10 H -0.26 -11.46 6.83 99.48 0.68 -10.78 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.26 -12.00 6.53 99.48 0.65 -11.35 16 13 N -0.69 -26.62 4.98 -448.98 -2.23 -28.85 16 14 C 0.55 20.36 6.35 86.79 0.55 20.92 16 15 O -0.57 -24.05 13.55 -3.86 -0.05 -24.10 16 16 C -0.15 -4.48 5.89 -20.01 -0.12 -4.60 16 17 C 0.09 2.50 10.71 85.04 0.91 3.41 16 18 N -0.46 -11.64 10.34 -194.40 -2.01 -13.65 16 19 C 0.10 2.08 11.13 84.82 0.94 3.02 16 20 C 0.08 1.80 6.61 22.56 0.15 1.95 16 21 O -0.30 -6.00 9.81 -92.76 -0.91 -6.91 16 22 C 0.06 1.04 2.85 30.59 0.09 1.13 16 23 C -0.14 -1.57 9.56 71.98 0.69 -0.88 16 24 C -0.18 -2.72 9.19 71.98 0.66 -2.05 16 25 C -0.12 -3.10 7.87 22.83 0.18 -2.92 16 26 H 0.05 1.93 5.64 -2.39 -0.01 1.92 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.60 7.84 -2.39 -0.02 1.59 16 29 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.05 2.05 3.21 -2.39 -0.01 2.04 16 31 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.41 13.79 6.60 -92.70 -0.61 13.18 16 33 H 0.17 4.16 6.42 -2.91 -0.02 4.14 16 34 H 0.20 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.07 1.23 6.35 -2.39 -0.02 1.22 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 0.88 6.92 -2.39 -0.02 0.87 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.15 4.00 5.25 -2.91 -0.02 3.99 16 Total: -1.00 -65.95 334.10 2.72 -63.23 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.35 Total: 24.62 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 5.60 Total: -4.87 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -3.94 Total: -97.69 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.96 Total: -31.02 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.67 Total: 45.73 kcal Total: -65.95 2.72 -63.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183831958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.056 kcal (2) G-P(sol) polarization free energy of solvation -65.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds