Wall clock time and date at job start Tue Mar 31 2020 06:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31513 * 120.00011 * 176.07000 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48506 * 109.47256 * 275.09053 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21285 * 120.00088 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00031 * 180.02562 * 14 13 3 17 17 N 1.46500 * 109.47420 * 179.97438 * 16 14 13 18 18 C 1.39962 * 120.00121 * 180.02562 * 17 16 14 19 19 C 1.38735 * 120.08818 * 359.97438 * 18 17 16 20 20 C 1.38221 * 119.97543 * 180.02562 * 19 18 17 21 21 C 1.38253 * 120.16291 * 0.02562 * 20 19 18 22 22 C 1.38284 * 120.18150 * 0.02562 * 21 20 19 23 23 C 1.38500 * 120.01762 * 359.71946 * 22 21 20 24 24 O 1.36011 * 120.08149 * 180.27724 * 23 22 21 25 25 C 1.42898 * 116.99980 * 0.27687 * 24 23 22 26 26 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 27 27 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 29 29 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 30 30 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 31 31 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 33 33 H 1.09004 * 109.46977 * 300.00150 * 16 14 13 34 34 H 1.09007 * 109.47227 * 59.99745 * 16 14 13 35 35 H 0.96995 * 119.99730 * 359.97438 * 17 16 14 36 36 H 1.07992 * 120.01066 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.91684 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.90927 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.98759 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.47186 * 60.00239 * 25 24 23 41 41 H 1.08999 * 109.47085 * 179.97438 * 25 24 23 42 42 H 1.08997 * 109.47091 * 300.00129 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2162 3.0796 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3349 2.6302 -0.4641 16 6 0.0645 3.3276 -2.6831 17 7 -1.2957 3.8602 -2.5719 18 6 -1.8763 4.5286 -3.6559 19 6 -1.1653 4.6882 -4.8364 20 6 -1.7408 5.3491 -5.9053 21 6 -3.0241 5.8526 -5.8013 22 6 -3.7384 5.6983 -4.6273 23 6 -3.1710 5.0327 -3.5534 24 8 -3.8746 4.8752 -2.4001 25 6 -5.1967 5.4165 -2.3676 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8280 1.5271 2.3972 32 1 2.2931 2.1156 -1.9978 33 1 0.7582 4.1421 -2.8919 34 1 0.1042 2.5998 -3.4936 35 1 -1.7941 3.7491 -1.7472 36 1 -0.1622 4.2969 -4.9199 37 1 -1.1862 5.4731 -6.8237 38 1 -3.4696 6.3687 -6.6389 39 1 -4.7409 6.0925 -4.5496 40 1 -5.8003 4.9481 -3.1451 41 1 -5.6451 5.2218 -1.3934 42 1 -5.1533 6.4919 -2.5398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183864283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:38 Heat of formation + Delta-G solvation = -50.126260 kcal Electronic energy + Delta-G solvation = -23171.001346 eV Core-core repulsion = 19730.245837 eV Total energy + Delta-G solvation = -3440.755509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.29559 -39.30784 -37.50498 -35.69613 -34.75806 -32.43689 -31.65625 -30.19230 -29.94656 -27.83720 -27.26655 -26.09519 -22.86502 -22.26741 -21.76027 -20.37200 -19.63316 -18.51231 -17.55060 -16.82817 -16.33418 -15.86148 -15.75704 -15.53195 -15.26663 -14.84154 -14.43279 -14.12843 -13.85039 -13.72819 -13.37761 -12.92630 -12.80168 -12.68015 -12.19417 -12.08906 -11.93413 -11.80516 -11.50265 -11.17325 -11.08115 -10.97821 -10.74418 -10.72090 -10.14266 -10.01356 -9.89268 -9.30018 -9.22257 -8.75061 -8.59199 -8.10873 -7.16680 -6.27017 -4.31037 1.35806 1.56057 3.12658 3.16268 3.24289 3.32019 3.37917 3.39149 3.81619 4.05725 4.29472 4.74882 4.87649 5.01589 5.01717 5.04625 5.15154 5.27480 5.34483 5.37975 5.40999 5.46681 5.54324 5.73377 6.01639 6.05353 6.09554 6.20972 6.29470 6.55327 6.59932 6.71661 6.74811 6.91282 6.95557 7.02521 7.24077 7.29920 7.49120 7.50636 7.89910 8.07815 8.48711 8.72039 8.85579 9.34624 10.84595 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.003421 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.351342 B = 8182.113902 C = 8647.735791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.239 3.761 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.888 5.888 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.259 1.259 12 H -0.286 1.286 13 N -0.697 5.697 14 C 0.496 3.504 15 O -0.548 6.548 16 C 0.103 3.897 17 N -0.727 5.727 18 C 0.205 3.795 19 C -0.175 4.175 20 C -0.103 4.103 21 C -0.150 4.150 22 C -0.163 4.163 23 C 0.050 3.950 24 O -0.319 6.319 25 C 0.033 3.967 26 H 0.049 0.951 27 H 0.030 0.970 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.268 0.732 32 H 0.395 0.605 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.416 0.584 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.497 7.011 -13.072 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.136 3.864 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.699 3.301 10 H -0.199 1.199 11 H -0.183 1.183 12 H -0.212 1.212 13 N -0.346 5.346 14 C 0.280 3.720 15 O -0.427 6.427 16 C -0.026 4.026 17 N -0.360 5.360 18 C 0.100 3.900 19 C -0.198 4.198 20 C -0.122 4.122 21 C -0.171 4.171 22 C -0.182 4.182 23 C 0.002 3.998 24 O -0.233 6.233 25 C -0.062 4.062 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.229 0.771 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.256 0.744 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.613 6.795 -12.067 21.629 hybrid contribution -0.438 0.253 0.621 0.801 sum -17.051 7.048 -11.446 21.712 Atomic orbital electron populations 1.21902 0.97408 0.98904 1.01980 1.22094 0.93654 0.99422 1.01322 1.19170 0.95578 0.89054 0.82583 0.93179 1.21002 0.88578 1.52459 0.95016 0.90265 1.24919 0.94876 0.93591 0.98878 1.69875 1.09625 1.48475 1.24437 0.86922 0.81279 0.79511 0.82386 1.19880 1.18290 1.21166 1.46503 1.14127 1.55548 1.18415 1.20348 0.83165 0.79532 0.88962 1.90663 1.50840 1.60065 1.41140 1.21118 0.85398 0.98901 0.97137 1.44324 1.14929 1.61389 1.15377 1.17223 0.89432 0.94313 0.89013 1.20538 1.00771 1.06259 0.92270 1.20791 0.95235 0.98134 0.98073 1.20639 0.95312 1.03717 0.97382 1.20952 1.00675 1.02921 0.93666 1.18458 0.91492 1.02607 0.87217 1.86039 1.27829 1.76067 1.33359 1.22960 0.81808 0.98188 1.03261 0.93230 0.95068 0.93115 0.92923 0.92036 0.92190 0.77137 0.89619 0.89784 0.74438 0.85362 0.86134 0.86444 0.85817 0.93019 0.88520 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.53 37.16 0.32 -2.53 16 2 C -0.13 -2.67 5.54 -26.73 -0.15 -2.82 16 3 C 0.24 5.46 1.82 -69.08 -0.13 5.33 16 4 H 0.05 1.27 4.92 -51.93 -0.26 1.01 16 5 C -0.53 -13.95 9.05 -34.44 -0.31 -14.26 16 6 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 8 N -0.89 -25.83 13.96 55.43 0.77 -25.06 16 9 Si 0.87 21.32 26.69 -169.99 -4.54 16.78 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.26 -6.20 6.88 56.52 0.39 -5.81 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.70 -13.15 5.03 -54.93 -0.28 -13.42 16 14 C 0.50 8.90 6.50 -10.98 -0.07 8.82 16 15 O -0.55 -11.63 12.81 5.55 0.07 -11.56 16 16 C 0.10 1.41 5.40 -5.19 -0.03 1.38 16 17 N -0.73 -10.73 5.70 -59.66 -0.34 -11.07 16 18 C 0.20 2.79 6.67 -83.56 -0.56 2.23 16 19 C -0.17 -2.04 9.31 -39.40 -0.37 -2.41 16 20 C -0.10 -1.06 10.04 -39.58 -0.40 -1.46 16 21 C -0.15 -1.51 10.04 -39.56 -0.40 -1.90 16 22 C -0.16 -1.76 9.04 -39.47 -0.36 -2.12 16 23 C 0.05 0.66 6.70 -39.08 -0.26 0.40 16 24 O -0.32 -4.18 9.74 -19.77 -0.19 -4.37 16 25 C 0.03 0.28 9.81 101.05 0.99 1.28 16 26 H 0.05 0.96 5.63 -51.93 -0.29 0.67 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.07 7.88 -51.93 -0.41 0.66 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.36 7.90 -51.93 -0.41 0.95 16 31 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.40 6.44 8.59 -40.82 -0.35 6.09 16 33 H 0.09 1.04 7.95 -51.93 -0.41 0.62 16 34 H 0.08 0.97 7.95 -51.93 -0.41 0.56 16 35 H 0.42 6.92 6.80 -40.82 -0.28 6.65 16 36 H 0.13 1.29 6.74 -52.49 -0.35 0.94 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.12 1.05 6.30 -52.49 -0.33 0.72 16 40 H 0.05 0.38 7.68 -51.93 -0.40 -0.02 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -31.30 341.85 -7.15 -38.45 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.99 Total: 11.00 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.81 Total: -5.89 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.16 Total: -49.55 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.12 Total: -15.93 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.54 Total: 16.78 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.30 -7.15 -38.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183864283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.679 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds