Wall clock time and date at job start Tue Mar 31 2020 06:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31513 * 120.00011 * 176.07000 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48506 * 109.47256 * 275.09053 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21285 * 120.00088 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00031 * 180.02562 * 14 13 3 17 17 N 1.46500 * 109.47420 * 179.97438 * 16 14 13 18 18 C 1.39962 * 120.00121 * 180.02562 * 17 16 14 19 19 C 1.38735 * 120.08818 * 359.97438 * 18 17 16 20 20 C 1.38221 * 119.97543 * 180.02562 * 19 18 17 21 21 C 1.38253 * 120.16291 * 0.02562 * 20 19 18 22 22 C 1.38284 * 120.18150 * 0.02562 * 21 20 19 23 23 C 1.38500 * 120.01762 * 359.71946 * 22 21 20 24 24 O 1.36011 * 120.08149 * 180.27724 * 23 22 21 25 25 C 1.42898 * 116.99980 * 0.27687 * 24 23 22 26 26 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 27 27 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 29 29 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 30 30 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 31 31 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 33 33 H 1.09004 * 109.46977 * 300.00150 * 16 14 13 34 34 H 1.09007 * 109.47227 * 59.99745 * 16 14 13 35 35 H 0.96995 * 119.99730 * 359.97438 * 17 16 14 36 36 H 1.07992 * 120.01066 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.91684 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.90927 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.98759 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.47186 * 60.00239 * 25 24 23 41 41 H 1.08999 * 109.47085 * 179.97438 * 25 24 23 42 42 H 1.08997 * 109.47091 * 300.00129 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2162 3.0796 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3349 2.6302 -0.4641 16 6 0.0645 3.3276 -2.6831 17 7 -1.2957 3.8602 -2.5719 18 6 -1.8763 4.5286 -3.6559 19 6 -1.1653 4.6882 -4.8364 20 6 -1.7408 5.3491 -5.9053 21 6 -3.0241 5.8526 -5.8013 22 6 -3.7384 5.6983 -4.6273 23 6 -3.1710 5.0327 -3.5534 24 8 -3.8746 4.8752 -2.4001 25 6 -5.1967 5.4165 -2.3676 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8280 1.5271 2.3972 32 1 2.2931 2.1156 -1.9978 33 1 0.7582 4.1421 -2.8919 34 1 0.1042 2.5998 -3.4936 35 1 -1.7941 3.7491 -1.7472 36 1 -0.1622 4.2969 -4.9199 37 1 -1.1862 5.4731 -6.8237 38 1 -3.4696 6.3687 -6.6389 39 1 -4.7409 6.0925 -4.5496 40 1 -5.8003 4.9481 -3.1451 41 1 -5.6451 5.2218 -1.3934 42 1 -5.1533 6.4919 -2.5398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183864283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:37 Heat of formation + Delta-G solvation = -72.007938 kcal Electronic energy + Delta-G solvation = -23171.950207 eV Core-core repulsion = 19730.245837 eV Total energy + Delta-G solvation = -3441.704370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.24472 -40.68901 -38.38276 -37.18888 -35.96952 -34.41684 -33.27353 -31.02132 -30.94706 -29.52256 -28.04434 -27.27331 -24.67002 -23.18131 -22.75069 -21.79500 -21.25637 -19.63338 -18.95527 -18.15094 -17.61711 -17.10149 -16.90204 -16.68794 -16.48453 -16.11126 -15.63244 -15.29829 -14.97329 -14.93532 -14.79781 -14.33349 -14.03784 -13.87862 -13.77602 -13.66092 -13.25252 -12.95088 -12.87501 -12.59811 -12.38326 -12.27815 -11.92164 -11.87794 -11.82951 -11.70781 -11.22000 -11.04661 -10.87113 -10.77134 -9.75147 -9.41322 -8.39739 -8.10483 -6.45116 0.53557 0.71922 1.27536 1.32758 1.42974 1.71178 2.10772 2.25883 2.46464 2.79022 2.98728 3.02691 3.86482 3.97710 4.16463 4.30515 4.33598 4.35114 4.39670 4.41604 4.44143 4.46049 4.54354 4.60365 4.72040 4.74343 4.81444 4.95716 5.09678 5.22926 5.25398 5.28613 5.40923 5.51498 5.54617 5.73680 5.75308 5.94839 6.08446 6.17731 6.58242 6.61224 6.80115 6.90570 7.20296 7.42291 8.75197 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.003421 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.351342 B = 8182.113902 C = 8647.735791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.244 3.756 4 H 0.028 0.972 5 C -0.526 4.526 6 H 0.060 0.940 7 C 0.034 3.966 8 N -0.930 5.930 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.254 1.254 12 H -0.279 1.279 13 N -0.697 5.697 14 C 0.495 3.505 15 O -0.581 6.581 16 C 0.116 3.884 17 N -0.740 5.740 18 C 0.175 3.825 19 C -0.179 4.179 20 C -0.107 4.107 21 C -0.148 4.148 22 C -0.166 4.166 23 C 0.029 3.971 24 O -0.347 6.347 25 C 0.025 3.975 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.270 0.730 32 H 0.409 0.591 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.404 0.596 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.119 7.584 -15.065 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.162 4.162 3 C 0.140 3.860 4 H 0.045 0.955 5 C -0.564 4.564 6 H 0.078 0.922 7 C -0.166 4.166 8 N -0.568 5.568 9 Si 0.748 3.252 10 H -0.203 1.203 11 H -0.178 1.178 12 H -0.204 1.204 13 N -0.346 5.346 14 C 0.282 3.718 15 O -0.462 6.462 16 C -0.012 4.012 17 N -0.374 5.374 18 C 0.073 3.927 19 C -0.202 4.202 20 C -0.126 4.126 21 C -0.168 4.168 22 C -0.186 4.186 23 C -0.019 4.019 24 O -0.262 6.262 25 C -0.069 4.069 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.244 0.756 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.241 0.759 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.249 7.384 -14.117 24.224 hybrid contribution -0.006 0.133 1.109 1.117 sum -18.255 7.518 -13.008 23.642 Atomic orbital electron populations 1.21766 0.95942 1.00239 1.01097 1.22003 0.94846 0.98042 1.01359 1.18875 0.93235 0.90195 0.83732 0.95452 1.21227 0.90260 1.50792 0.94128 0.92218 1.25553 0.95679 0.93951 1.01430 1.69969 1.11048 1.50720 1.25109 0.86123 0.80070 0.79091 0.79951 1.20294 1.17811 1.20426 1.46206 1.15140 1.55783 1.17509 1.21005 0.82061 0.78624 0.90096 1.90652 1.51689 1.61066 1.42794 1.21087 0.85577 0.99679 0.94816 1.44315 1.15052 1.62601 1.15419 1.17544 0.90255 0.95549 0.89387 1.20818 1.01329 1.06125 0.91942 1.21162 0.95561 0.97272 0.98601 1.21054 0.95218 1.02800 0.97748 1.21260 1.01691 1.02307 0.93313 1.18775 0.91778 1.03426 0.87906 1.85999 1.29548 1.76778 1.33904 1.23201 0.80363 0.98910 1.04443 0.93136 0.92557 0.94963 0.91674 0.93226 0.92069 0.75567 0.87729 0.87133 0.75941 0.84034 0.83531 0.83768 0.83802 0.91753 0.87490 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 8.53 71.98 0.61 -4.46 16 2 C -0.12 -5.13 5.54 30.59 0.17 -4.96 16 3 C 0.24 11.09 1.82 44.25 0.08 11.17 16 4 H 0.03 1.39 4.92 -2.39 -0.01 1.38 16 5 C -0.53 -27.75 9.05 25.60 0.23 -27.51 16 6 H 0.06 3.33 8.06 -2.91 -0.02 3.30 16 7 C 0.03 1.91 5.47 84.65 0.46 2.37 16 8 N -0.93 -54.99 13.96 21.45 0.30 -54.69 16 9 Si 0.92 44.46 26.69 68.60 1.83 46.29 16 10 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.25 -11.94 6.88 99.48 0.68 -11.26 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 N -0.70 -25.66 5.03 -446.08 -2.24 -27.90 16 14 C 0.50 17.35 6.50 87.66 0.57 17.92 16 15 O -0.58 -24.63 12.81 -3.05 -0.04 -24.67 16 16 C 0.12 2.97 5.40 85.63 0.46 3.44 16 17 N -0.74 -21.38 5.70 -342.67 -1.95 -23.33 16 18 C 0.18 4.59 6.67 38.22 0.25 4.84 16 19 C -0.18 -3.77 9.31 22.38 0.21 -3.56 16 20 C -0.11 -1.87 10.04 22.27 0.22 -1.64 16 21 C -0.15 -2.51 10.04 22.28 0.22 -2.29 16 22 C -0.17 -3.25 9.04 22.34 0.20 -3.05 16 23 C 0.03 0.74 6.70 22.59 0.15 0.89 16 24 O -0.35 -9.03 9.74 -93.67 -0.91 -9.94 16 25 C 0.03 0.41 9.81 113.37 1.11 1.52 16 26 H 0.05 1.90 5.63 -2.39 -0.01 1.89 16 27 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.03 1.32 7.88 -2.39 -0.02 1.31 16 29 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.05 2.16 7.90 -2.38 -0.02 2.14 16 31 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.41 12.81 8.59 -92.71 -0.80 12.01 16 33 H 0.11 2.29 7.95 -2.38 -0.02 2.27 16 34 H 0.11 2.25 7.95 -2.38 -0.02 2.23 16 35 H 0.40 13.60 6.80 -92.71 -0.63 12.97 16 36 H 0.14 2.45 6.74 -2.91 -0.02 2.43 16 37 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.14 2.08 6.30 -2.91 -0.02 2.06 16 40 H 0.06 0.84 7.68 -2.38 -0.02 0.82 16 41 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.06 0.84 7.65 -2.39 -0.02 0.82 16 Total: -1.00 -68.43 341.85 1.55 -66.88 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: -0.40 Total: 32.69 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 4.97 Total: -5.32 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -3.90 Total: -105.92 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.95 Total: -34.62 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.83 Total: 46.29 kcal Total: -68.43 1.55 -66.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183864283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.123 kcal (2) G-P(sol) polarization free energy of solvation -68.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds