Wall clock time and date at job start Tue Mar 31 2020 06:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47176 * 2 1 4 4 H 1.09003 * 109.46971 * 55.00491 * 3 2 1 5 5 C 1.50704 * 109.47238 * 174.99984 * 3 2 1 6 6 H 1.07996 * 119.99857 * 120.00131 * 5 3 2 7 7 C 1.37874 * 119.99992 * 300.00608 * 5 3 2 8 8 N 1.31506 * 120.00194 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99724 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47244 * 89.99892 * 9 7 5 11 11 H 1.48504 * 109.47065 * 209.99834 * 9 7 5 12 12 H 1.48500 * 109.47438 * 329.99860 * 9 7 5 13 13 N 1.46497 * 109.47418 * 295.00287 * 3 2 1 14 14 C 1.34777 * 119.99937 * 85.00053 * 13 3 2 15 15 O 1.21672 * 119.99969 * 359.97438 * 14 13 3 16 16 C 1.46844 * 119.99848 * 180.02562 * 14 13 3 17 17 N 1.37834 * 125.80461 * 0.26812 * 16 14 13 18 18 H 0.96999 * 125.34436 * 0.06183 * 17 16 14 19 19 C 1.34108 * 109.30672 * 180.19796 * 17 16 14 20 20 C 1.50703 * 125.82803 * 179.83288 * 19 17 16 21 21 C 1.38619 * 108.34916 * 359.57689 * 19 17 16 22 22 C 1.46611 * 126.51819 * 180.24571 * 21 19 17 23 23 C 1.50700 * 119.99602 * 274.69741 * 22 21 19 24 24 O 1.21317 * 120.00445 * 94.69999 * 22 21 19 25 25 C 1.36245 * 125.79919 * 179.97438 * 16 14 13 26 26 C 1.50695 * 126.50728 * 359.97438 * 25 16 14 27 27 H 1.08995 * 109.47031 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46635 * 299.99875 * 1 2 3 29 29 H 1.08995 * 109.47320 * 59.99639 * 1 2 3 30 30 H 1.09007 * 109.47093 * 240.00643 * 2 1 3 31 31 H 1.08995 * 109.47320 * 120.00361 * 2 1 3 32 32 H 0.97002 * 120.00106 * 179.97438 * 8 7 5 33 33 H 0.97004 * 120.00163 * 264.99545 * 13 3 2 34 34 H 1.09002 * 109.47377 * 264.45765 * 20 19 17 35 35 H 1.08999 * 109.47213 * 144.45582 * 20 19 17 36 36 H 1.09003 * 109.46978 * 24.45982 * 20 19 17 37 37 H 1.08999 * 109.47188 * 4.99404 * 23 22 21 38 38 H 1.08998 * 109.47198 * 125.00154 * 23 22 21 39 39 H 1.09004 * 109.47290 * 244.99403 * 23 22 21 40 40 H 1.09001 * 109.47259 * 269.97396 * 26 25 16 41 41 H 1.09004 * 109.47560 * 29.97724 * 26 25 16 42 42 H 1.09006 * 109.47257 * 149.97569 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3373 2.1732 9 14 6.0051 0.8799 1.3810 10 1 6.4429 2.1127 2.0835 11 1 6.4392 -0.3112 2.1543 12 1 6.6132 0.8395 0.0268 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3420 2.6318 -0.4312 16 6 0.0465 3.3206 -2.6217 17 7 0.8261 3.4217 -3.7539 18 1 1.7242 3.0681 -3.8502 19 6 0.1490 4.0883 -4.7003 20 6 0.6534 4.4121 -6.0830 21 6 -1.0961 4.4237 -4.1917 22 6 -2.1574 5.1529 -4.8928 23 6 -2.1579 6.6598 -4.9001 24 8 -3.0350 4.5432 -5.4671 25 6 -1.1483 3.9280 -2.8667 26 6 -2.3053 4.0493 -1.9089 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8294 -0.0613 2.9497 33 1 2.2719 2.1233 -1.9977 34 1 1.0733 5.4180 -6.0904 35 1 -0.1720 4.3578 -6.7928 36 1 1.4237 3.6947 -6.3660 37 1 -1.2535 7.0259 -4.4141 38 1 -2.1881 7.0182 -5.9290 39 1 -3.0327 7.0255 -4.3623 40 1 -2.9654 3.1897 -2.0256 41 1 -1.9289 4.0822 -0.8864 42 1 -2.8589 4.9639 -2.1217 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183874258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:26 Heat of formation + Delta-G solvation = -50.109961 kcal Electronic energy + Delta-G solvation = -23661.178420 eV Core-core repulsion = 20220.423618 eV Total energy + Delta-G solvation = -3440.754803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56568 -39.04139 -38.44049 -35.19125 -33.02905 -32.49125 -31.93487 -30.87089 -29.92621 -27.82991 -27.30796 -25.96108 -23.32834 -22.53472 -21.23129 -19.65711 -19.21346 -18.59425 -18.15968 -16.38338 -15.62614 -15.53081 -15.35674 -14.99356 -14.73822 -14.62523 -14.21781 -14.09153 -13.31867 -13.27953 -13.03975 -12.87217 -12.70013 -12.44292 -12.35412 -12.24432 -12.05282 -11.95975 -11.54557 -11.40420 -11.30323 -11.02232 -10.89653 -10.37333 -10.24126 -9.87702 -9.66948 -9.18088 -9.10415 -8.71451 -8.56281 -8.11408 -7.81026 -6.18480 -4.28657 1.68036 1.85187 2.41450 3.03802 3.19510 3.26503 3.27560 3.91132 3.93720 4.23608 4.35602 4.59735 4.87655 5.01289 5.12991 5.17293 5.24312 5.30048 5.32948 5.46947 5.59514 5.64922 5.81832 5.89045 6.02183 6.19917 6.36873 6.43122 6.44478 6.62924 6.69177 6.91494 7.01541 7.16854 7.29504 7.34218 7.36089 7.46497 7.55850 7.67221 7.83454 8.11628 8.54550 8.69772 8.99708 9.38657 10.86750 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024236 B = 0.003839 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.017512 B = 7291.764561 C = 7937.288721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.573 3.427 15 O -0.529 6.529 16 C -0.040 4.040 17 N -0.523 5.523 18 H 0.419 0.581 19 C 0.082 3.918 20 C -0.093 4.093 21 C -0.262 4.262 22 C 0.441 3.559 23 C -0.197 4.197 24 O -0.458 6.458 25 C -0.047 4.047 26 C -0.091 4.091 27 H 0.023 0.977 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.030 0.970 31 H 0.100 0.900 32 H 0.265 0.735 33 H 0.380 0.620 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 9.534 -14.333 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.354 5.354 14 C 0.358 3.642 15 O -0.407 6.407 16 C -0.152 4.152 17 N -0.118 5.118 18 H 0.257 0.743 19 C -0.039 4.039 20 C -0.150 4.150 21 C -0.270 4.270 22 C 0.316 3.684 23 C -0.254 4.254 24 O -0.332 6.332 25 C -0.054 4.054 26 C -0.148 4.148 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.212 0.788 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.577 8.970 -13.681 17.284 hybrid contribution 1.951 -0.220 -0.301 1.986 sum -3.626 8.750 -13.982 16.888 Atomic orbital electron populations 1.21848 0.98201 0.98193 1.01338 1.21938 0.92742 0.99658 1.02278 1.18827 0.94262 0.89226 0.80627 0.92988 1.21191 0.90611 1.39360 1.06409 0.92246 1.24873 0.98618 0.94708 0.95352 1.69885 1.35180 1.37333 1.09283 0.86458 0.84790 0.77724 0.78170 1.20525 1.21005 1.19930 1.46443 1.14204 1.56185 1.18602 1.17020 0.82984 0.78933 0.85215 1.90781 1.51426 1.59917 1.38583 1.20349 0.93712 1.11992 0.89105 1.41592 1.15787 1.43411 1.11034 0.74286 1.20492 0.91779 0.99375 0.92236 1.20468 1.02094 1.02619 0.89845 1.19797 0.96537 1.13520 0.97121 1.21693 0.81503 0.91020 0.74155 1.22240 1.04872 0.94005 1.04291 1.90544 1.34855 1.72391 1.35366 1.19485 0.94578 0.98307 0.93042 1.20383 0.94318 1.00957 0.99142 0.95790 0.93002 0.94233 0.95141 0.88188 0.92463 0.78808 0.90001 0.90010 0.90878 0.89839 0.89254 0.88861 0.91344 0.89111 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.63 2.24 -69.08 -0.15 6.47 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -13.72 8.73 -34.44 -0.30 -14.02 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.09 11.29 55.43 0.63 -23.46 16 9 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.71 -14.12 5.02 -56.19 -0.28 -14.40 16 14 C 0.57 11.32 6.36 -12.78 -0.08 11.24 16 15 O -0.53 -11.95 11.81 5.21 0.06 -11.89 16 16 C -0.04 -0.65 6.98 -82.40 -0.58 -1.22 16 17 N -0.52 -6.53 5.90 -5.55 -0.03 -6.56 16 18 H 0.42 4.14 8.13 -40.82 -0.33 3.80 16 19 C 0.08 0.95 7.22 -81.46 -0.59 0.36 16 20 C -0.09 -0.69 10.20 36.01 0.37 -0.32 16 21 C -0.26 -3.56 5.71 -105.11 -0.60 -4.16 16 22 C 0.44 5.46 6.53 -30.93 -0.20 5.26 16 23 C -0.20 -1.60 10.32 36.01 0.37 -1.23 16 24 O -0.46 -7.13 17.86 5.53 0.10 -7.04 16 25 C -0.05 -0.74 6.22 -104.07 -0.65 -1.39 16 26 C -0.09 -1.38 9.63 36.00 0.35 -1.03 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 29 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.38 6.46 7.61 -40.82 -0.31 6.15 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.60 7.99 -51.93 -0.41 0.19 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.52 6.40 -51.93 -0.33 1.19 16 42 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -31.65 348.44 -7.42 -39.07 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.13 Total: 8.29 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -1.99 Total: -4.32 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.31 Total: -44.42 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.16 Total: -18.93 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.65 -7.42 -39.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183874258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.042 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds