Wall clock time and date at job start Tue Mar 31 2020 06:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47176 * 2 1 4 4 H 1.09003 * 109.46971 * 55.00491 * 3 2 1 5 5 C 1.50704 * 109.47238 * 174.99984 * 3 2 1 6 6 H 1.07996 * 119.99857 * 120.00131 * 5 3 2 7 7 C 1.37874 * 119.99992 * 300.00608 * 5 3 2 8 8 N 1.31506 * 120.00194 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99724 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47244 * 89.99892 * 9 7 5 11 11 H 1.48504 * 109.47065 * 209.99834 * 9 7 5 12 12 H 1.48500 * 109.47438 * 329.99860 * 9 7 5 13 13 N 1.46497 * 109.47418 * 295.00287 * 3 2 1 14 14 C 1.34777 * 119.99937 * 85.00053 * 13 3 2 15 15 O 1.21672 * 119.99969 * 359.97438 * 14 13 3 16 16 C 1.46844 * 119.99848 * 180.02562 * 14 13 3 17 17 N 1.37834 * 125.80461 * 0.26812 * 16 14 13 18 18 H 0.96999 * 125.34436 * 0.06183 * 17 16 14 19 19 C 1.34108 * 109.30672 * 180.19796 * 17 16 14 20 20 C 1.50703 * 125.82803 * 179.83288 * 19 17 16 21 21 C 1.38619 * 108.34916 * 359.57689 * 19 17 16 22 22 C 1.46611 * 126.51819 * 180.24571 * 21 19 17 23 23 C 1.50700 * 119.99602 * 274.69741 * 22 21 19 24 24 O 1.21317 * 120.00445 * 94.69999 * 22 21 19 25 25 C 1.36245 * 125.79919 * 179.97438 * 16 14 13 26 26 C 1.50695 * 126.50728 * 359.97438 * 25 16 14 27 27 H 1.08995 * 109.47031 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46635 * 299.99875 * 1 2 3 29 29 H 1.08995 * 109.47320 * 59.99639 * 1 2 3 30 30 H 1.09007 * 109.47093 * 240.00643 * 2 1 3 31 31 H 1.08995 * 109.47320 * 120.00361 * 2 1 3 32 32 H 0.97002 * 120.00106 * 179.97438 * 8 7 5 33 33 H 0.97004 * 120.00163 * 264.99545 * 13 3 2 34 34 H 1.09002 * 109.47377 * 264.45765 * 20 19 17 35 35 H 1.08999 * 109.47213 * 144.45582 * 20 19 17 36 36 H 1.09003 * 109.46978 * 24.45982 * 20 19 17 37 37 H 1.08999 * 109.47188 * 4.99404 * 23 22 21 38 38 H 1.08998 * 109.47198 * 125.00154 * 23 22 21 39 39 H 1.09004 * 109.47290 * 244.99403 * 23 22 21 40 40 H 1.09001 * 109.47259 * 269.97396 * 26 25 16 41 41 H 1.09004 * 109.47560 * 29.97724 * 26 25 16 42 42 H 1.09006 * 109.47257 * 149.97569 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3373 2.1732 9 14 6.0051 0.8799 1.3810 10 1 6.4429 2.1127 2.0835 11 1 6.4392 -0.3112 2.1543 12 1 6.6132 0.8395 0.0268 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3420 2.6318 -0.4312 16 6 0.0465 3.3206 -2.6217 17 7 0.8261 3.4217 -3.7539 18 1 1.7242 3.0681 -3.8502 19 6 0.1490 4.0883 -4.7003 20 6 0.6534 4.4121 -6.0830 21 6 -1.0961 4.4237 -4.1917 22 6 -2.1574 5.1529 -4.8928 23 6 -2.1579 6.6598 -4.9001 24 8 -3.0350 4.5432 -5.4671 25 6 -1.1483 3.9280 -2.8667 26 6 -2.3053 4.0493 -1.9089 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8294 -0.0613 2.9497 33 1 2.2719 2.1233 -1.9977 34 1 1.0733 5.4180 -6.0904 35 1 -0.1720 4.3578 -6.7928 36 1 1.4237 3.6947 -6.3660 37 1 -1.2535 7.0259 -4.4141 38 1 -2.1881 7.0182 -5.9290 39 1 -3.0327 7.0255 -4.3623 40 1 -2.9654 3.1897 -2.0256 41 1 -1.9289 4.0822 -0.8864 42 1 -2.8589 4.9639 -2.1217 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183874258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:26 Heat of formation + Delta-G solvation = -70.861902 kcal Electronic energy + Delta-G solvation = -23662.078292 eV Core-core repulsion = 20220.423618 eV Total energy + Delta-G solvation = -3441.654674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.67639 -40.40648 -39.69442 -36.99624 -34.52744 -33.88062 -33.25947 -32.42351 -30.71388 -29.18867 -28.74539 -27.28065 -25.08688 -23.75000 -22.57158 -21.44599 -20.58768 -19.70010 -19.41818 -18.11506 -17.22105 -16.68804 -16.63333 -16.26544 -16.09976 -15.99316 -15.46601 -15.24015 -14.75441 -14.61826 -14.32650 -14.07787 -13.82937 -13.71459 -13.50525 -13.19932 -13.18227 -13.12385 -12.98723 -12.97046 -12.88532 -12.70458 -12.46952 -12.17566 -12.08806 -11.60436 -11.08894 -10.93698 -10.71190 -10.53948 -9.83930 -9.72747 -9.05497 -8.17300 -6.35130 0.48739 0.90619 1.33794 1.44686 1.44875 1.55183 2.01714 2.32305 2.43510 2.56823 3.12602 3.34525 3.76533 3.94441 4.09814 4.20210 4.42242 4.46948 4.50859 4.54836 4.65597 4.73481 4.73912 4.77173 4.80524 4.81418 5.01861 5.04030 5.08728 5.15497 5.24259 5.31628 5.40870 5.52052 5.56928 5.60739 5.72272 5.79875 5.92634 6.13992 6.40236 6.55260 6.71379 6.91965 7.30253 7.47998 8.88088 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024236 B = 0.003839 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.017512 B = 7291.764561 C = 7937.288721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.281 3.719 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.260 1.260 13 N -0.703 5.703 14 C 0.572 3.428 15 O -0.567 6.567 16 C -0.071 4.071 17 N -0.512 5.512 18 H 0.432 0.568 19 C 0.113 3.887 20 C -0.094 4.094 21 C -0.287 4.287 22 C 0.446 3.554 23 C -0.190 4.190 24 O -0.497 6.497 25 C -0.055 4.055 26 C -0.089 4.089 27 H 0.044 0.956 28 H 0.029 0.971 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.265 0.735 33 H 0.397 0.603 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.352 10.875 -17.307 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.184 1.184 13 N -0.351 5.351 14 C 0.360 3.640 15 O -0.447 6.447 16 C -0.182 4.182 17 N -0.109 5.109 18 H 0.272 0.728 19 C -0.010 4.010 20 C -0.151 4.151 21 C -0.294 4.294 22 C 0.324 3.676 23 C -0.247 4.247 24 O -0.374 6.374 25 C -0.063 4.063 26 C -0.146 4.146 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.231 0.769 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.160 10.323 -16.688 20.059 hybrid contribution 1.468 -0.582 0.564 1.677 sum -2.692 9.742 -16.124 19.029 Atomic orbital electron populations 1.21681 0.97104 0.99101 1.00257 1.21790 0.93612 0.99212 1.01310 1.18394 0.93785 0.89054 0.80976 0.97975 1.21544 0.91219 1.39157 1.06835 0.90954 1.25754 1.03272 0.94306 0.95003 1.70042 1.37107 1.38174 1.09832 0.85377 0.79116 0.77390 0.78631 1.20455 1.21097 1.18354 1.46125 1.14950 1.56300 1.17766 1.17421 0.82189 0.78275 0.86081 1.90758 1.52360 1.61254 1.40372 1.19722 0.95058 1.14296 0.89164 1.41536 1.16147 1.43164 1.10017 0.72770 1.21227 0.90644 0.95975 0.93136 1.20704 1.02900 1.04771 0.86701 1.20090 0.98131 1.14793 0.96409 1.22184 0.80063 0.92779 0.72586 1.22254 1.05944 0.90379 1.06090 1.90539 1.36052 1.73519 1.37246 1.19708 0.94304 0.98021 0.94255 1.20328 0.94496 1.01780 0.98004 0.93726 0.95222 0.94132 0.94204 0.90794 0.92562 0.76921 0.87211 0.89522 0.88805 0.88617 0.86949 0.87853 0.92104 0.91370 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.07 16 2 C -0.12 -5.90 5.45 30.59 0.17 -5.73 16 3 C 0.28 14.15 2.24 44.25 0.10 14.25 16 4 H 0.00 0.14 7.58 -2.39 -0.02 0.12 16 5 C -0.55 -28.24 8.73 25.60 0.22 -28.01 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.90 5.29 84.66 0.45 1.35 16 8 N -0.91 -51.43 11.29 21.44 0.24 -51.18 16 9 Si 0.97 40.97 29.54 68.60 2.03 42.99 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.29 -12.00 7.11 99.48 0.71 -11.30 16 12 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 13 N -0.70 -28.49 5.02 -449.92 -2.26 -30.75 16 14 C 0.57 23.25 6.36 86.49 0.55 23.80 16 15 O -0.57 -27.05 11.81 -4.26 -0.05 -27.10 16 16 C -0.07 -2.31 6.98 39.99 0.28 -2.03 16 17 N -0.51 -11.74 5.90 -171.48 -1.01 -12.76 16 18 H 0.43 7.43 8.13 -92.71 -0.75 6.67 16 19 C 0.11 2.28 7.22 42.30 0.31 2.59 16 20 C -0.09 -0.97 10.20 71.24 0.73 -0.25 16 21 C -0.29 -7.28 5.71 -20.18 -0.12 -7.39 16 22 C 0.45 10.10 6.53 27.87 0.18 10.28 16 23 C -0.19 -2.47 10.32 71.24 0.73 -1.74 16 24 O -0.50 -14.86 17.86 -3.14 -0.06 -14.91 16 25 C -0.05 -1.72 6.22 -19.51 -0.12 -1.85 16 26 C -0.09 -2.78 9.63 71.23 0.69 -2.09 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.03 1.45 7.84 -2.39 -0.02 1.43 16 29 H 0.04 1.82 5.64 -2.39 -0.01 1.81 16 30 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.07 4.05 5.95 -2.39 -0.01 4.03 16 32 H 0.27 14.18 8.31 -92.71 -0.77 13.40 16 33 H 0.40 13.22 7.61 -92.71 -0.71 12.51 16 34 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 0.92 8.07 -2.39 -0.02 0.90 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 1.03 7.99 -2.39 -0.02 1.01 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.07 2.43 6.40 -2.39 -0.02 2.41 16 42 H 0.08 1.97 8.05 -2.38 -0.02 1.95 16 Total: -1.00 -72.04 348.44 3.27 -68.77 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -0.41 Total: 26.83 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 4.78 Total: -1.89 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -3.03 Total: -94.69 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -0.11 Total: -42.02 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -72.04 3.27 -68.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183874258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.088 kcal (2) G-P(sol) polarization free energy of solvation -72.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds