Wall clock time and date at job start Tue Mar 31 2020 06:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.47104 * 2 1 4 4 H 1.09008 * 109.46601 * 305.00150 * 3 2 1 5 5 C 1.50691 * 109.47272 * 185.00244 * 3 2 1 6 6 H 1.08004 * 120.00200 * 240.00022 * 5 3 2 7 7 C 1.37882 * 120.00206 * 59.99458 * 5 3 2 8 8 N 1.31508 * 119.99719 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00025 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47066 * 89.99955 * 9 7 5 11 11 H 1.48500 * 109.47053 * 210.00283 * 9 7 5 12 12 H 1.48505 * 109.47093 * 330.00428 * 9 7 5 13 13 N 1.46501 * 109.46915 * 64.99978 * 3 2 1 14 14 C 1.34776 * 119.99694 * 274.99882 * 13 3 2 15 15 O 1.21672 * 120.00276 * 0.02562 * 14 13 3 16 16 C 1.46849 * 119.99854 * 180.02562 * 14 13 3 17 17 N 1.37840 * 125.80155 * 359.97438 * 16 14 13 18 18 H 0.96999 * 125.34255 * 0.02562 * 17 16 14 19 19 C 1.34102 * 109.30659 * 180.02562 * 17 16 14 20 20 C 1.50706 * 125.82749 * 179.97438 * 19 17 16 21 21 C 1.38616 * 108.35154 * 0.02562 * 19 17 16 22 22 C 1.46611 * 126.51891 * 180.02562 * 21 19 17 23 23 C 1.50700 * 119.99814 * 273.71934 * 22 21 19 24 24 O 1.21326 * 120.00407 * 93.72095 * 22 21 19 25 25 C 1.36241 * 125.80091 * 180.02562 * 16 14 13 26 26 C 1.50692 * 126.51056 * 0.23941 * 25 16 14 27 27 H 1.09001 * 109.47032 * 299.99991 * 1 2 3 28 28 H 1.09002 * 109.47073 * 59.99922 * 1 2 3 29 29 H 1.08998 * 109.46746 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47301 * 239.99995 * 2 1 3 31 31 H 1.09000 * 109.47385 * 119.99366 * 2 1 3 32 32 H 0.97010 * 119.99816 * 179.97438 * 8 7 5 33 33 H 0.96988 * 119.99985 * 95.00464 * 13 3 2 34 34 H 1.08997 * 109.47351 * 270.13692 * 20 19 17 35 35 H 1.09007 * 109.46356 * 30.13339 * 20 19 17 36 36 H 1.08992 * 109.47073 * 150.12915 * 20 19 17 37 37 H 1.08997 * 109.47130 * 5.01385 * 23 22 21 38 38 H 1.08995 * 109.47082 * 125.01754 * 23 22 21 39 39 H 1.09001 * 109.47004 * 245.01751 * 23 22 21 40 40 H 1.09005 * 109.47603 * 269.69084 * 26 25 16 41 41 H 1.09000 * 109.47019 * 29.68790 * 26 25 16 42 42 H 1.08998 * 109.46982 * 149.69158 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5418 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1732 9 14 6.0049 0.8801 -1.3812 10 1 6.5538 -0.3518 -0.7598 11 1 6.3835 0.9215 -2.8165 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3421 2.6318 0.4313 16 6 0.0468 3.3214 2.6215 17 7 0.8286 3.4275 3.7517 18 1 1.7287 3.0785 3.8462 19 6 0.1495 4.0890 4.7001 20 6 0.6536 4.4122 6.0831 21 6 -1.0959 4.4238 4.1919 22 6 -2.1572 5.1530 4.8931 23 6 -3.1360 4.4070 5.7628 24 8 -2.2474 6.3569 4.7731 25 6 -1.1479 3.9288 2.8665 26 6 -2.3070 4.0455 1.9107 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.8293 -0.0604 -2.9503 33 1 2.2719 2.1232 1.9977 34 1 0.3958 3.6001 6.7629 35 1 1.7366 4.5333 6.0558 36 1 0.1934 5.3370 6.4307 37 1 -2.8459 3.3578 5.8189 38 1 -3.1347 4.8384 6.7637 39 1 -4.1354 4.4852 5.3347 40 1 -2.2101 4.9643 1.3323 41 1 -2.3087 3.1898 1.2355 42 1 -3.2407 4.0667 2.4727 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183874277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:28 Heat of formation + Delta-G solvation = -70.972109 kcal Electronic energy + Delta-G solvation = -23664.691451 eV Core-core repulsion = 20223.031998 eV Total energy + Delta-G solvation = -3441.659453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.67671 -40.40715 -39.69473 -36.99374 -34.53089 -33.88358 -33.25337 -32.41492 -30.71493 -29.18726 -28.74405 -27.28146 -25.08301 -23.74688 -22.56690 -21.44176 -20.58828 -19.69943 -19.41933 -18.12150 -17.22066 -16.69175 -16.64063 -16.23476 -16.12789 -15.98076 -15.44009 -15.28812 -14.73202 -14.59976 -14.35276 -14.11042 -13.77974 -13.70392 -13.50194 -13.19649 -13.17633 -13.12637 -12.98502 -12.96855 -12.91683 -12.68176 -12.46400 -12.18536 -12.08047 -11.60025 -11.08197 -10.93683 -10.71302 -10.53882 -9.83162 -9.73290 -9.05644 -8.17907 -6.35603 0.48699 0.90860 1.33307 1.43393 1.44520 1.54339 2.01559 2.31793 2.43715 2.56410 3.11884 3.34419 3.76369 3.94531 4.09910 4.20327 4.42358 4.48783 4.50882 4.57116 4.65846 4.73679 4.75056 4.77447 4.80633 4.81549 5.01927 5.04696 5.08823 5.15704 5.25781 5.31834 5.42363 5.52865 5.56718 5.60812 5.72729 5.80509 5.92895 6.14658 6.40224 6.55177 6.70913 6.91908 7.29830 7.47824 8.87373 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024419 B = 0.003835 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.352201 B = 7299.393683 C = 7940.778365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.281 3.719 4 H 0.000 1.000 5 C -0.550 4.550 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.970 3.030 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.266 1.266 13 N -0.703 5.703 14 C 0.572 3.428 15 O -0.567 6.567 16 C -0.071 4.071 17 N -0.512 5.512 18 H 0.432 0.568 19 C 0.113 3.887 20 C -0.093 4.093 21 C -0.287 4.287 22 C 0.446 3.554 23 C -0.190 4.190 24 O -0.498 6.498 25 C -0.055 4.055 26 C -0.089 4.089 27 H 0.042 0.958 28 H 0.027 0.973 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.265 0.735 33 H 0.397 0.603 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 4.024 19.901 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.018 0.982 5 C -0.589 4.589 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.351 5.351 14 C 0.360 3.640 15 O -0.447 6.447 16 C -0.182 4.182 17 N -0.109 5.109 18 H 0.272 0.728 19 C -0.010 4.010 20 C -0.150 4.150 21 C -0.294 4.294 22 C 0.324 3.676 23 C -0.246 4.246 24 O -0.374 6.374 25 C -0.063 4.063 26 C -0.146 4.146 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.231 0.769 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.130 0.870 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.754 4.426 18.914 20.566 hybrid contribution 1.606 -0.311 -0.657 1.763 sum -5.148 4.115 18.257 19.410 Atomic orbital electron populations 1.21680 0.96931 0.99193 1.00310 1.21780 0.93787 0.98959 1.01348 1.18401 0.93709 0.89209 0.80931 0.98162 1.21547 0.91302 1.39166 1.06838 0.91086 1.25746 1.03236 0.94343 0.94982 1.70044 1.37057 1.38161 1.09814 0.85382 0.79170 0.78842 0.77154 1.19552 1.21371 1.19020 1.46122 1.14898 1.56359 1.17757 1.17421 0.82236 0.78209 0.86102 1.90759 1.52231 1.61565 1.40188 1.19726 0.94954 1.14290 0.89253 1.41525 1.15921 1.43423 1.10009 0.72771 1.21223 0.90671 0.95899 0.93220 1.20697 1.03019 1.04056 0.87271 1.20097 0.98541 1.14409 0.96369 1.22201 0.81852 0.87096 0.76484 1.22252 0.99106 1.02519 1.00750 1.90543 1.70831 1.18750 1.57294 1.19708 0.94599 0.97904 0.94070 1.20334 0.94463 1.02483 0.97367 0.93855 0.95400 0.93556 0.90885 0.94044 0.92553 0.76926 0.87166 0.88875 0.89571 0.88561 0.86970 0.87831 0.92269 0.91243 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.51 71.98 0.61 -4.91 16 2 C -0.12 -5.80 5.45 30.60 0.17 -5.63 16 3 C 0.28 14.14 2.24 44.25 0.10 14.24 16 4 H 0.00 0.03 7.58 -2.38 -0.02 0.01 16 5 C -0.55 -28.46 8.73 25.60 0.22 -28.24 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -51.47 11.29 21.45 0.24 -51.22 16 9 Si 0.97 41.26 29.54 68.60 2.03 43.28 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 13 N -0.70 -28.50 5.02 -449.90 -2.26 -30.76 16 14 C 0.57 23.24 6.36 86.50 0.55 23.79 16 15 O -0.57 -27.03 11.81 -4.26 -0.05 -27.08 16 16 C -0.07 -2.30 6.98 39.99 0.28 -2.02 16 17 N -0.51 -11.75 5.90 -171.47 -1.01 -12.77 16 18 H 0.43 7.44 8.13 -92.71 -0.75 6.68 16 19 C 0.11 2.28 7.22 42.30 0.31 2.59 16 20 C -0.09 -0.98 10.24 71.24 0.73 -0.25 16 21 C -0.29 -7.28 5.71 -20.18 -0.12 -7.39 16 22 C 0.45 10.10 6.43 27.87 0.18 10.28 16 23 C -0.19 -2.44 10.32 71.24 0.73 -1.70 16 24 O -0.50 -14.95 17.86 -3.17 -0.06 -15.01 16 25 C -0.05 -1.72 6.22 -19.51 -0.12 -1.84 16 26 C -0.09 -2.78 9.64 71.23 0.69 -2.09 16 27 H 0.04 1.87 5.64 -2.39 -0.01 1.86 16 28 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 3.96 5.95 -2.39 -0.01 3.95 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.27 14.20 8.31 -92.70 -0.77 13.43 16 33 H 0.40 13.23 7.61 -92.72 -0.71 12.52 16 34 H 0.11 0.64 8.14 -2.39 -0.02 0.63 16 35 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.09 0.93 7.93 -2.39 -0.02 0.91 16 37 H 0.10 1.01 7.99 -2.39 -0.02 0.99 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.07 2.45 6.40 -2.39 -0.02 2.43 16 42 H 0.08 1.98 8.06 -2.39 -0.02 1.96 16 Total: -1.00 -72.33 348.25 3.27 -69.06 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -0.40 Total: 26.31 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 4.78 Total: -1.82 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -3.03 Total: -94.75 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.11 Total: -42.08 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Total: -72.33 3.27 -69.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183874277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.911 kcal (2) G-P(sol) polarization free energy of solvation -72.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds