Wall clock time and date at job start Tue Mar 31 2020 06:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21514 * 119.99976 * 359.97438 * 14 13 3 16 16 C 1.48166 * 120.00134 * 180.02562 * 14 13 3 17 17 C 1.39612 * 120.88789 * 359.71203 * 16 14 13 18 18 C 1.38857 * 118.94960 * 179.78307 * 17 16 14 19 19 O 1.35681 * 119.62305 * 180.23202 * 18 17 16 20 20 N 1.32199 * 120.75004 * 0.50914 * 18 17 16 21 21 C 1.31879 * 121.97561 * 359.74320 * 20 18 17 22 22 C 1.50699 * 119.51634 * 179.97438 * 21 20 18 23 23 C 1.53000 * 109.47193 * 95.01863 * 22 21 20 24 24 C 1.52992 * 109.47620 * 215.01915 * 22 21 20 25 25 C 1.38020 * 120.97332 * 359.97438 * 21 20 18 26 26 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 27 27 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 29 29 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 30 30 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 31 31 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 33 33 H 1.08002 * 120.53071 * 0.02800 * 17 16 14 34 34 H 0.96701 * 113.99476 * 270.27475 * 19 18 17 35 35 H 1.08999 * 109.47101 * 335.02273 * 22 21 20 36 36 H 1.09005 * 109.47163 * 180.02562 * 23 22 21 37 37 H 1.09004 * 109.47382 * 300.00175 * 23 22 21 38 38 H 1.08995 * 109.47464 * 60.00059 * 23 22 21 39 39 H 1.09007 * 109.46723 * 59.99573 * 24 22 21 40 40 H 1.08997 * 109.47425 * 179.97438 * 24 22 21 41 41 H 1.08999 * 109.47176 * 300.00313 * 24 22 21 42 42 H 1.08007 * 120.43268 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3364 2.6301 -0.4623 16 6 0.0710 3.3163 -2.6613 17 6 0.9613 3.3648 -3.7356 18 6 0.5628 3.9869 -4.9113 19 8 1.4155 4.0377 -5.9655 20 7 -0.6359 4.5349 -5.0133 21 6 -1.5009 4.5129 -4.0181 22 6 -2.8525 5.1556 -4.1947 23 6 -3.8691 4.0956 -4.6234 24 6 -3.2962 5.7821 -2.8714 25 6 -1.1866 3.9098 -2.8170 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8280 1.5270 2.3971 32 1 2.2931 2.1156 -1.9978 33 1 1.9431 2.9220 -3.6549 34 1 1.9870 4.8177 -5.9717 35 1 -2.7897 5.9292 -4.9600 36 1 -4.8467 4.5606 -4.7516 37 1 -3.5531 3.6492 -5.5662 38 1 -3.9320 3.3219 -3.8582 39 1 -2.5718 6.5372 -2.5660 40 1 -4.2736 6.2473 -2.9993 41 1 -3.3590 5.0085 -2.1061 42 1 -1.9015 3.8972 -2.0076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183901030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:35 Heat of formation + Delta-G solvation = -58.573294 kcal Electronic energy + Delta-G solvation = -23598.194094 eV Core-core repulsion = 20157.072293 eV Total energy + Delta-G solvation = -3441.121800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.88928 -39.10142 -37.62582 -35.40192 -35.12799 -32.95065 -32.31182 -31.25102 -29.52527 -27.68243 -27.35746 -24.68258 -24.08627 -22.74765 -21.50740 -20.24948 -19.65042 -18.59990 -17.47001 -17.09128 -16.58023 -15.68698 -15.50038 -15.33778 -14.81047 -14.74814 -14.33885 -14.13720 -13.78135 -13.45101 -12.87314 -12.83144 -12.62543 -12.25162 -12.10803 -12.01281 -11.94616 -11.88980 -11.58400 -11.34822 -11.06860 -11.00975 -10.79932 -10.76473 -10.12166 -9.92637 -9.84243 -9.80334 -9.29567 -9.27238 -8.91662 -8.78483 -8.17142 -6.30094 -4.34692 0.72782 0.87390 3.03085 3.20968 3.29582 3.36115 3.41388 3.67933 3.83732 4.24675 4.26375 4.66582 4.85411 4.89254 4.96627 5.01224 5.02773 5.15885 5.31124 5.44253 5.46651 5.62464 5.66248 5.70296 5.80796 5.98429 6.02163 6.02960 6.07183 6.12083 6.18132 6.33903 6.56511 6.71457 6.85657 6.92219 7.19015 7.24346 7.33901 7.43044 7.77837 8.00693 8.41729 8.66959 8.76430 9.30890 10.81404 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019352 B = 0.004276 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.541813 B = 6546.199265 C = 7202.500117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.237 3.763 4 H 0.053 0.947 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.083 3.917 8 N -0.886 5.886 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.258 1.258 12 H -0.285 1.285 13 N -0.690 5.690 14 C 0.541 3.459 15 O -0.539 6.539 16 C -0.059 4.059 17 C -0.161 4.161 18 C 0.309 3.691 19 O -0.480 6.480 20 N -0.493 5.493 21 C 0.152 3.848 22 C -0.044 4.044 23 C -0.143 4.143 24 C -0.151 4.151 25 C -0.127 4.127 26 H 0.048 0.952 27 H 0.032 0.968 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.269 0.731 32 H 0.394 0.606 33 H 0.148 0.852 34 H 0.401 0.599 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.309 6.638 -11.054 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.135 3.865 4 H 0.070 0.930 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.522 5.522 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.182 1.182 12 H -0.211 1.211 13 N -0.338 5.338 14 C 0.326 3.674 15 O -0.418 6.418 16 C -0.070 4.070 17 C -0.183 4.183 18 C 0.130 3.870 19 O -0.287 6.287 20 N -0.213 5.213 21 C 0.014 3.986 22 C -0.063 4.063 23 C -0.201 4.201 24 C -0.209 4.209 25 C -0.148 4.148 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.228 0.772 33 H 0.165 0.835 34 H 0.258 0.742 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.066 6.437 -11.173 19.082 hybrid contribution 0.622 0.122 1.205 1.361 sum -13.445 6.559 -9.969 17.977 Atomic orbital electron populations 1.21916 0.97399 0.99048 1.01970 1.22102 0.93703 0.99269 1.01478 1.19235 0.95758 0.89166 0.82299 0.92959 1.20983 0.88453 1.52703 0.95091 0.90256 1.24909 0.94885 0.93506 0.98855 1.69873 1.09626 1.48244 1.24490 0.86931 0.81327 0.79551 0.82388 1.19820 1.18205 1.21087 1.46575 1.13904 1.54830 1.18470 1.18116 0.83297 0.79611 0.86403 1.90741 1.50871 1.59903 1.40251 1.20644 0.94349 0.97253 0.94731 1.22389 1.01621 1.02154 0.92106 1.18924 0.87844 0.94543 0.85694 1.84797 1.50940 1.48103 1.44851 1.66766 1.03284 1.18832 1.32377 1.20894 0.94819 0.94871 0.88013 1.20064 0.89112 0.97830 0.99322 1.21825 0.98022 0.98391 1.01821 1.21964 1.01558 1.01141 0.96198 1.22135 0.96639 0.96922 0.99103 0.93299 0.94912 0.92998 0.92851 0.91832 0.92136 0.77165 0.83463 0.74197 0.89101 0.91730 0.92285 0.92196 0.92184 0.91664 0.91647 0.83031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.53 37.16 0.32 -2.53 16 2 C -0.13 -2.67 5.54 -26.73 -0.15 -2.82 16 3 C 0.24 5.42 1.82 -69.08 -0.13 5.30 16 4 H 0.05 1.30 4.92 -51.93 -0.26 1.05 16 5 C -0.53 -13.90 9.05 -34.44 -0.31 -14.21 16 6 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -25.51 13.96 55.43 0.77 -24.73 16 9 Si 0.87 20.93 26.69 -169.99 -4.54 16.39 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.26 -6.05 6.88 56.52 0.39 -5.66 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.69 -13.39 4.99 -55.77 -0.28 -13.67 16 14 C 0.54 10.12 6.40 -12.18 -0.08 10.04 16 15 O -0.54 -11.43 13.58 5.35 0.07 -11.36 16 16 C -0.06 -0.91 5.91 -104.68 -0.62 -1.52 16 17 C -0.16 -2.20 9.55 -38.84 -0.37 -2.57 16 18 C 0.31 4.11 7.74 -17.16 -0.13 3.98 16 19 O -0.48 -5.45 13.56 -18.75 -0.25 -5.71 16 20 N -0.49 -6.78 10.27 -9.60 -0.10 -6.88 16 21 C 0.15 1.93 5.79 -82.65 -0.48 1.45 16 22 C -0.04 -0.43 3.23 -91.78 -0.30 -0.72 16 23 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 24 C -0.15 -1.28 8.62 37.15 0.32 -0.96 16 25 C -0.13 -1.77 8.74 -39.03 -0.34 -2.11 16 26 H 0.05 0.95 5.63 -51.93 -0.29 0.66 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 1.07 7.88 -51.93 -0.41 0.66 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.39 7.90 -51.93 -0.41 0.98 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.39 6.77 6.73 -40.82 -0.27 6.50 16 33 H 0.15 1.80 6.53 -52.49 -0.34 1.45 16 34 H 0.40 2.54 9.06 45.56 0.41 2.95 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.58 6.48 -51.93 -0.34 0.24 16 42 H 0.15 2.03 5.98 -52.48 -0.31 1.71 16 LS Contribution 342.29 15.07 5.16 5.16 Total: -1.00 -31.54 342.29 -6.36 -37.89 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.17 Total: 8.31 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -2.02 Total: -5.41 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.40 Total: -45.28 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.18 Total: -17.06 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.54 Total: 16.39 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.54 -6.36 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183901030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.679 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds