Wall clock time and date at job start Tue Mar 31 2020 06:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21514 * 119.99976 * 359.97438 * 14 13 3 16 16 C 1.48166 * 120.00134 * 180.02562 * 14 13 3 17 17 C 1.39612 * 120.88789 * 359.71203 * 16 14 13 18 18 C 1.38857 * 118.94960 * 179.78307 * 17 16 14 19 19 O 1.35681 * 119.62305 * 180.23202 * 18 17 16 20 20 N 1.32199 * 120.75004 * 0.50914 * 18 17 16 21 21 C 1.31879 * 121.97561 * 359.74320 * 20 18 17 22 22 C 1.50699 * 119.51634 * 179.97438 * 21 20 18 23 23 C 1.53000 * 109.47193 * 95.01863 * 22 21 20 24 24 C 1.52992 * 109.47620 * 215.01915 * 22 21 20 25 25 C 1.38020 * 120.97332 * 359.97438 * 21 20 18 26 26 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 27 27 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 29 29 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 30 30 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 31 31 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 33 33 H 1.08002 * 120.53071 * 0.02800 * 17 16 14 34 34 H 0.96701 * 113.99476 * 270.27475 * 19 18 17 35 35 H 1.08999 * 109.47101 * 335.02273 * 22 21 20 36 36 H 1.09005 * 109.47163 * 180.02562 * 23 22 21 37 37 H 1.09004 * 109.47382 * 300.00175 * 23 22 21 38 38 H 1.08995 * 109.47464 * 60.00059 * 23 22 21 39 39 H 1.09007 * 109.46723 * 59.99573 * 24 22 21 40 40 H 1.08997 * 109.47425 * 179.97438 * 24 22 21 41 41 H 1.08999 * 109.47176 * 300.00313 * 24 22 21 42 42 H 1.08007 * 120.43268 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3364 2.6301 -0.4623 16 6 0.0710 3.3163 -2.6613 17 6 0.9613 3.3648 -3.7356 18 6 0.5628 3.9869 -4.9113 19 8 1.4155 4.0377 -5.9655 20 7 -0.6359 4.5349 -5.0133 21 6 -1.5009 4.5129 -4.0181 22 6 -2.8525 5.1556 -4.1947 23 6 -3.8691 4.0956 -4.6234 24 6 -3.2962 5.7821 -2.8714 25 6 -1.1866 3.9098 -2.8170 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8280 1.5270 2.3971 32 1 2.2931 2.1156 -1.9978 33 1 1.9431 2.9220 -3.6549 34 1 1.9870 4.8177 -5.9717 35 1 -2.7897 5.9292 -4.9600 36 1 -4.8467 4.5606 -4.7516 37 1 -3.5531 3.6492 -5.5662 38 1 -3.9320 3.3219 -3.8582 39 1 -2.5718 6.5372 -2.5660 40 1 -4.2736 6.2473 -2.9993 41 1 -3.3590 5.0085 -2.1061 42 1 -1.9015 3.8972 -2.0076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183901030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:34 Heat of formation + Delta-G solvation = -82.755704 kcal Electronic energy + Delta-G solvation = -23599.242722 eV Core-core repulsion = 20157.072293 eV Total energy + Delta-G solvation = -3442.170428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.00523 -40.55916 -38.54178 -37.07249 -36.06323 -34.50574 -33.99977 -32.72989 -30.53771 -29.49828 -28.04857 -25.95886 -25.18919 -24.43831 -22.62443 -21.69075 -21.14574 -19.74635 -18.97240 -18.27400 -18.04389 -17.18348 -16.75037 -16.55265 -16.30791 -15.93610 -15.70571 -15.08122 -14.99534 -14.78846 -14.59027 -14.11772 -13.82896 -13.72571 -13.61998 -13.25175 -12.94819 -12.87128 -12.83630 -12.62150 -12.43584 -12.38627 -12.07096 -11.87255 -11.81119 -11.73367 -11.27613 -11.18091 -10.99404 -10.86514 -10.50247 -9.92249 -9.83282 -8.40197 -6.46975 -0.43613 -0.14505 1.29227 1.34248 1.44286 1.79027 2.17838 2.26441 2.43740 2.66981 2.99394 3.30851 3.58585 3.85265 3.88382 4.03194 4.14998 4.22509 4.29026 4.36736 4.38866 4.49125 4.62182 4.63558 4.79120 4.81183 4.90999 4.96291 5.01411 5.08917 5.16514 5.18941 5.23787 5.33860 5.36916 5.40469 5.41264 5.52577 5.65969 6.08431 6.53888 6.57242 6.74609 6.79213 7.15421 7.28276 8.74590 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019352 B = 0.004276 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.541813 B = 6546.199265 C = 7202.500117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C 0.243 3.757 4 H 0.034 0.966 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.036 3.964 8 N -0.929 5.929 9 Si 0.923 3.077 10 H -0.274 1.274 11 H -0.250 1.250 12 H -0.278 1.278 13 N -0.691 5.691 14 C 0.545 3.455 15 O -0.565 6.565 16 C -0.072 4.072 17 C -0.161 4.161 18 C 0.312 3.688 19 O -0.484 6.484 20 N -0.502 5.502 21 C 0.156 3.844 22 C -0.043 4.043 23 C -0.140 4.140 24 C -0.149 4.149 25 C -0.130 4.130 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.271 0.729 32 H 0.404 0.596 33 H 0.158 0.842 34 H 0.422 0.578 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.209 7.145 -12.018 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C 0.139 3.861 4 H 0.052 0.948 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.165 4.165 8 N -0.567 5.567 9 Si 0.747 3.253 10 H -0.200 1.200 11 H -0.174 1.174 12 H -0.204 1.204 13 N -0.340 5.340 14 C 0.331 3.669 15 O -0.446 6.446 16 C -0.083 4.083 17 C -0.183 4.183 18 C 0.133 3.867 19 O -0.294 6.294 20 N -0.222 5.222 21 C 0.018 3.982 22 C -0.062 4.062 23 C -0.198 4.198 24 C -0.206 4.206 25 C -0.151 4.151 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.240 0.760 33 H 0.176 0.824 34 H 0.284 0.716 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.959 6.960 -12.170 21.243 hybrid contribution 1.217 0.010 1.354 1.821 sum -14.742 6.970 -10.816 19.568 Atomic orbital electron populations 1.21790 0.95792 1.00505 1.01193 1.22022 0.95055 0.97829 1.01506 1.18977 0.93509 0.90343 0.83231 0.94763 1.21184 0.90080 1.51350 0.94216 0.92475 1.25565 0.95738 0.93681 1.01482 1.69972 1.11146 1.50355 1.25215 0.86115 0.80172 0.79318 0.79682 1.19998 1.17398 1.20386 1.46299 1.14795 1.55182 1.17733 1.18456 0.82380 0.78802 0.87225 1.90720 1.51491 1.60803 1.41568 1.20356 0.95631 0.98656 0.93682 1.22450 1.01776 1.02176 0.91865 1.18995 0.88045 0.93872 0.85788 1.84750 1.51066 1.49706 1.43912 1.66894 1.03577 1.19056 1.32716 1.21354 0.95733 0.93967 0.87162 1.20184 0.87663 0.98096 1.00244 1.21817 0.98797 0.98076 1.01073 1.21960 1.02575 1.00834 0.95250 1.22222 0.96122 0.96951 0.99790 0.93474 0.92298 0.94340 0.91964 0.92693 0.91990 0.75976 0.82440 0.71611 0.88422 0.89440 0.93189 0.92661 0.92691 0.89485 0.92200 0.82786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.53 71.98 0.61 -4.45 16 2 C -0.13 -5.17 5.54 30.59 0.17 -5.00 16 3 C 0.24 11.04 1.82 44.25 0.08 11.12 16 4 H 0.03 1.70 4.92 -2.39 -0.01 1.69 16 5 C -0.53 -27.87 9.05 25.60 0.23 -27.64 16 6 H 0.06 3.20 8.06 -2.91 -0.02 3.17 16 7 C 0.04 1.99 5.47 84.65 0.46 2.45 16 8 N -0.93 -54.34 13.96 21.45 0.30 -54.04 16 9 Si 0.92 43.31 26.69 68.60 1.83 45.14 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.25 -11.33 6.88 99.48 0.68 -10.65 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 13 N -0.69 -26.59 4.99 -448.66 -2.24 -28.83 16 14 C 0.54 20.09 6.40 86.88 0.56 20.64 16 15 O -0.57 -23.75 13.58 -3.76 -0.05 -23.80 16 16 C -0.07 -2.17 5.91 -19.90 -0.12 -2.29 16 17 C -0.16 -4.19 9.55 22.75 0.22 -3.97 16 18 C 0.31 7.77 7.74 84.79 0.66 8.43 16 19 O -0.48 -9.98 13.56 -89.99 -1.22 -11.20 16 20 N -0.50 -12.92 10.27 -297.17 -3.05 -15.97 16 21 C 0.16 3.70 5.79 42.50 0.25 3.94 16 22 C -0.04 -0.74 3.23 -11.54 -0.04 -0.78 16 23 C -0.14 -2.13 9.18 71.98 0.66 -1.47 16 24 C -0.15 -2.20 8.62 71.98 0.62 -1.58 16 25 C -0.13 -3.47 8.74 22.63 0.20 -3.28 16 26 H 0.05 1.76 5.63 -2.39 -0.01 1.75 16 27 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.04 1.52 7.88 -2.39 -0.02 1.50 16 29 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.05 2.35 7.90 -2.38 -0.02 2.33 16 31 H 0.27 14.91 8.31 -92.71 -0.77 14.13 16 32 H 0.40 13.77 6.73 -92.71 -0.62 13.14 16 33 H 0.16 3.66 6.53 -2.91 -0.02 3.64 16 34 H 0.42 4.38 9.06 -74.06 -0.67 3.71 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 0.96 6.48 -2.39 -0.02 0.94 16 42 H 0.15 3.99 5.98 -2.91 -0.02 3.97 16 Total: -1.00 -67.02 342.29 -0.13 -67.16 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -0.26 Total: 25.43 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 4.56 Total: -3.88 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -4.99 Total: -98.84 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.27 Total: -35.00 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.83 Total: 45.14 kcal Total: -67.02 -0.13 -67.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183901030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.599 kcal (2) G-P(sol) polarization free energy of solvation -67.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds