Wall clock time and date at job start Tue Mar 31 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47396 * 2 1 4 4 C 1.50704 * 109.47120 * 239.99587 * 2 1 3 5 5 H 1.08004 * 119.99864 * 239.99665 * 4 2 1 6 6 C 1.37874 * 119.99756 * 60.00283 * 4 2 1 7 7 N 1.31511 * 120.00363 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99701 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47122 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47015 * 119.99912 * 8 6 4 11 11 H 1.48506 * 109.46792 * 239.99960 * 8 6 4 12 12 C 1.53007 * 109.47300 * 119.99770 * 2 1 3 13 13 O 1.45198 * 109.46809 * 300.00199 * 12 2 1 14 14 C 1.34728 * 116.99801 * 179.97438 * 13 12 2 15 15 O 1.21490 * 120.00260 * 359.97438 * 14 13 12 16 16 C 1.47587 * 119.99882 * 179.97438 * 14 13 12 17 17 N 1.32257 * 126.68318 * 0.45091 * 16 14 13 18 18 N 1.28838 * 110.13857 * 179.97438 * 17 16 14 19 19 H 0.97000 * 124.97667 * 179.66262 * 18 17 16 20 20 C 1.34334 * 110.05743 * 359.69057 * 18 17 16 21 21 C 1.35565 * 107.22265 * 0.10967 * 20 18 17 22 22 C 1.50379 * 124.62379 * 179.86883 * 21 20 18 23 23 C 1.53490 * 108.27795 * 343.66316 * 22 21 20 24 24 C 1.53106 * 109.49674 * 49.52081 * 23 22 21 25 25 C 1.50706 * 128.90008 * 180.13068 * 20 18 17 26 26 H 1.08995 * 109.47305 * 300.00094 * 1 2 3 27 27 H 1.08996 * 109.47157 * 60.00181 * 1 2 3 28 28 H 1.08999 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47377 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46818 * 300.00037 * 3 2 1 31 31 H 1.08995 * 109.46970 * 59.99701 * 3 2 1 32 32 H 0.97002 * 120.00102 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47513 * 179.97438 * 12 2 1 34 34 H 1.08996 * 109.46843 * 59.99743 * 12 2 1 35 35 H 1.08998 * 109.70330 * 103.40549 * 22 21 20 36 36 H 1.09002 * 109.69940 * 224.01029 * 22 21 20 37 37 H 1.09004 * 109.48344 * 289.51126 * 23 22 21 38 38 H 1.08995 * 109.45754 * 169.52051 * 23 22 21 39 39 H 1.08995 * 109.44461 * 169.89229 * 24 23 22 40 40 H 1.09003 * 109.40955 * 49.98977 * 24 23 22 41 41 H 1.08998 * 109.69152 * 283.00273 * 25 20 18 42 42 H 1.08997 * 109.69245 * 43.57934 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3225 -1.1198 -4.0078 9 1 3.1484 -2.2858 -3.6036 10 1 1.1678 -1.5869 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 6 2.0400 -0.7212 1.2493 13 8 1.5560 -0.0367 2.4348 14 6 1.9176 -0.5489 3.6273 15 8 2.6177 -1.5406 3.6754 16 6 1.4631 0.0948 4.8752 17 7 0.6957 1.1671 4.9771 18 7 0.4963 1.4537 6.2172 19 1 -0.0321 2.2017 6.5371 20 6 1.1275 0.5654 7.0027 21 6 1.7538 -0.3179 6.1869 22 6 2.5824 -1.4797 6.6610 23 6 2.9286 -1.2527 8.1390 24 6 1.6559 -0.9002 8.9137 25 6 1.1755 0.4988 8.5075 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.7082 1.1606 -3.4845 33 1 3.1300 -0.7216 1.2491 34 1 1.6767 -1.7488 1.2493 35 1 2.0148 -2.4040 6.5537 36 1 3.4992 -1.5407 6.0747 37 1 3.6435 -0.4342 8.2234 38 1 3.3660 -2.1611 8.5532 39 1 1.8661 -0.9154 9.9831 40 1 0.8794 -1.6306 8.6863 41 1 1.8690 1.2496 8.8864 42 1 0.1806 0.6783 8.9150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184813590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:45 Heat of formation + Delta-G solvation = -34.444313 kcal Electronic energy + Delta-G solvation = -23532.737891 eV Core-core repulsion = 20092.662402 eV Total energy + Delta-G solvation = -3440.075489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.98 seconds Orbital eigenvalues (eV) -42.93143 -39.54052 -37.15470 -36.44212 -34.72094 -32.79866 -31.19841 -30.13691 -29.77433 -26.07837 -25.52445 -25.16268 -24.01512 -23.76733 -22.37181 -20.08230 -19.25853 -18.72942 -17.89412 -16.99226 -16.23632 -15.75638 -15.65349 -15.39616 -14.73010 -14.63535 -14.08796 -13.93840 -13.39816 -13.29195 -12.97845 -12.85149 -12.72807 -12.32211 -11.74897 -11.40066 -11.20839 -11.15456 -11.08474 -10.92486 -10.91662 -10.74116 -10.61958 -10.33183 -10.22432 -10.06402 -9.80207 -9.43601 -9.29627 -9.23918 -8.75334 -8.67170 -8.32157 -5.96170 -4.07644 1.52920 1.93865 2.64933 3.30130 3.30578 3.38910 3.44497 3.44764 4.28697 4.38895 4.44077 4.58305 4.67985 4.92982 5.03208 5.18008 5.29411 5.30071 5.31345 5.48837 5.64002 5.69231 5.84022 5.89415 6.11032 6.12262 6.15335 6.18789 6.36808 6.55649 6.82459 6.87774 7.07461 7.11181 7.25768 7.26436 7.48505 7.70890 7.75300 7.76305 8.12957 8.23904 8.35939 8.46752 8.92682 9.57538 11.05044 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037067 B = 0.003267 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.215358 B = 8567.480041 C = 9093.167935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.071 3.929 3 C -0.130 4.130 4 C -0.510 4.510 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.083 3.917 13 O -0.332 6.332 14 C 0.544 3.456 15 O -0.508 6.508 16 C 0.014 3.986 17 N -0.229 5.229 18 N -0.373 5.373 19 H 0.445 0.555 20 C 0.003 3.997 21 C -0.142 4.142 22 C -0.045 4.045 23 C -0.121 4.121 24 C -0.115 4.115 25 C -0.046 4.046 26 H 0.018 0.982 27 H 0.083 0.917 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.083 0.917 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.382 0.568 23.595 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 C -0.187 4.187 4 C -0.548 4.548 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.011 3.989 13 O -0.246 6.246 14 C 0.386 3.614 15 O -0.396 6.396 16 C -0.143 4.143 17 N -0.066 5.066 18 N -0.087 5.087 19 H 0.290 0.710 20 C -0.123 4.123 21 C -0.151 4.151 22 C -0.083 4.083 23 C -0.158 4.158 24 C -0.153 4.153 25 C -0.085 4.085 26 H 0.037 0.963 27 H 0.102 0.898 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.102 0.898 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.786 1.129 22.699 22.740 hybrid contribution 0.427 -0.608 -0.381 0.835 sum -0.360 0.521 22.318 22.327 Atomic orbital electron populations 1.21762 0.97308 0.98901 1.00743 1.18241 0.93461 0.93088 0.88184 1.21763 0.97999 0.98216 1.00742 1.20995 1.31797 1.12237 0.89815 0.92410 1.24860 0.94849 0.94926 0.98767 1.69851 1.36430 1.22665 1.23098 0.86492 0.78627 0.79698 0.82917 1.19749 1.21004 1.21008 1.23733 0.98265 0.95858 0.81080 1.86671 1.68555 1.55186 1.14236 1.19583 0.77209 0.81229 0.83412 1.90799 1.35867 1.24901 1.88001 1.20656 1.04116 0.97047 0.92528 1.74144 1.16666 1.15914 0.99851 1.43126 1.38448 1.23921 1.03198 0.71004 1.21145 1.01425 0.94211 0.95511 1.19859 1.04431 1.00695 0.90125 1.20025 0.99076 0.94278 0.94917 1.21671 0.97264 1.01971 0.94921 1.21569 0.98384 0.95414 0.99933 1.20217 1.02353 0.99294 0.86588 0.96290 0.89797 0.95903 0.95896 0.89806 0.96282 0.93019 0.92396 0.92401 0.90436 0.89654 0.91639 0.91103 0.90902 0.91237 0.89884 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.11 37.16 0.30 -2.98 16 2 C 0.07 1.81 0.58 -155.66 -0.09 1.72 16 3 C -0.13 -3.28 8.11 37.16 0.30 -2.98 16 4 C -0.51 -14.02 8.01 -34.44 -0.28 -14.30 16 5 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 6 C 0.07 1.84 5.15 -17.82 -0.09 1.75 16 7 N -0.88 -24.59 9.35 55.43 0.52 -24.07 16 8 Si 0.89 21.23 29.54 -169.99 -5.02 16.20 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.08 1.96 4.27 37.16 0.16 2.11 16 13 O -0.33 -7.40 8.89 -40.57 -0.36 -7.76 16 14 C 0.54 11.02 7.97 34.54 0.28 11.30 16 15 O -0.51 -10.72 15.59 -19.26 -0.30 -11.03 16 16 C 0.01 0.25 7.16 -83.00 -0.59 -0.35 16 17 N -0.23 -3.64 12.27 33.27 0.41 -3.23 16 18 N -0.37 -4.08 6.82 33.42 0.23 -3.85 16 19 H 0.45 2.97 8.96 -190.22 -1.71 1.26 16 20 C 0.00 0.04 7.12 -82.45 -0.59 -0.55 16 21 C -0.14 -1.94 5.99 -104.87 -0.63 -2.56 16 22 C -0.04 -0.52 5.54 -27.78 -0.15 -0.68 16 23 C -0.12 -0.96 5.91 -26.42 -0.16 -1.11 16 24 C -0.11 -0.73 5.89 -26.47 -0.16 -0.88 16 25 C -0.05 -0.29 6.31 -27.67 -0.17 -0.46 16 26 H 0.02 0.44 7.68 -51.93 -0.40 0.04 16 27 H 0.08 2.28 6.07 -51.93 -0.32 1.96 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 2.27 6.07 -51.93 -0.32 1.96 16 31 H 0.02 0.44 7.68 -51.93 -0.40 0.05 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.12 7.67 -51.93 -0.40 0.72 16 37 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 339.57 15.07 5.12 5.12 Total: -1.00 -31.88 339.57 -9.00 -40.88 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -7.72 Total: -2.29 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -1.87 Total: -9.98 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 1.15 Total: -31.15 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.66 Total: -18.78 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.88 -9.00 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184813590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.436 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.98 seconds