Wall clock time and date at job start Tue Mar 31 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47396 * 2 1 4 4 C 1.50704 * 109.47120 * 239.99587 * 2 1 3 5 5 H 1.08004 * 119.99864 * 239.99665 * 4 2 1 6 6 C 1.37874 * 119.99756 * 60.00283 * 4 2 1 7 7 N 1.31511 * 120.00363 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99701 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47122 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47015 * 119.99912 * 8 6 4 11 11 H 1.48506 * 109.46792 * 239.99960 * 8 6 4 12 12 C 1.53007 * 109.47300 * 119.99770 * 2 1 3 13 13 O 1.45198 * 109.46809 * 300.00199 * 12 2 1 14 14 C 1.34728 * 116.99801 * 179.97438 * 13 12 2 15 15 O 1.21490 * 120.00260 * 359.97438 * 14 13 12 16 16 C 1.47587 * 119.99882 * 179.97438 * 14 13 12 17 17 N 1.32257 * 126.68318 * 0.45091 * 16 14 13 18 18 N 1.28838 * 110.13857 * 179.97438 * 17 16 14 19 19 H 0.97000 * 124.97667 * 179.66262 * 18 17 16 20 20 C 1.34334 * 110.05743 * 359.69057 * 18 17 16 21 21 C 1.35565 * 107.22265 * 0.10967 * 20 18 17 22 22 C 1.50379 * 124.62379 * 179.86883 * 21 20 18 23 23 C 1.53490 * 108.27795 * 343.66316 * 22 21 20 24 24 C 1.53106 * 109.49674 * 49.52081 * 23 22 21 25 25 C 1.50706 * 128.90008 * 180.13068 * 20 18 17 26 26 H 1.08995 * 109.47305 * 300.00094 * 1 2 3 27 27 H 1.08996 * 109.47157 * 60.00181 * 1 2 3 28 28 H 1.08999 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47377 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46818 * 300.00037 * 3 2 1 31 31 H 1.08995 * 109.46970 * 59.99701 * 3 2 1 32 32 H 0.97002 * 120.00102 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47513 * 179.97438 * 12 2 1 34 34 H 1.08996 * 109.46843 * 59.99743 * 12 2 1 35 35 H 1.08998 * 109.70330 * 103.40549 * 22 21 20 36 36 H 1.09002 * 109.69940 * 224.01029 * 22 21 20 37 37 H 1.09004 * 109.48344 * 289.51126 * 23 22 21 38 38 H 1.08995 * 109.45754 * 169.52051 * 23 22 21 39 39 H 1.08995 * 109.44461 * 169.89229 * 24 23 22 40 40 H 1.09003 * 109.40955 * 49.98977 * 24 23 22 41 41 H 1.08998 * 109.69152 * 283.00273 * 25 20 18 42 42 H 1.08997 * 109.69245 * 43.57934 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3225 -1.1198 -4.0078 9 1 3.1484 -2.2858 -3.6036 10 1 1.1678 -1.5869 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 6 2.0400 -0.7212 1.2493 13 8 1.5560 -0.0367 2.4348 14 6 1.9176 -0.5489 3.6273 15 8 2.6177 -1.5406 3.6754 16 6 1.4631 0.0948 4.8752 17 7 0.6957 1.1671 4.9771 18 7 0.4963 1.4537 6.2172 19 1 -0.0321 2.2017 6.5371 20 6 1.1275 0.5654 7.0027 21 6 1.7538 -0.3179 6.1869 22 6 2.5824 -1.4797 6.6610 23 6 2.9286 -1.2527 8.1390 24 6 1.6559 -0.9002 8.9137 25 6 1.1755 0.4988 8.5075 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.7082 1.1606 -3.4845 33 1 3.1300 -0.7216 1.2491 34 1 1.6767 -1.7488 1.2493 35 1 2.0148 -2.4040 6.5537 36 1 3.4992 -1.5407 6.0747 37 1 3.6435 -0.4342 8.2234 38 1 3.3660 -2.1611 8.5532 39 1 1.8661 -0.9154 9.9831 40 1 0.8794 -1.6306 8.6863 41 1 1.8690 1.2496 8.8864 42 1 0.1806 0.6783 8.9150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184813590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:41 Heat of formation + Delta-G solvation = -52.778459 kcal Electronic energy + Delta-G solvation = -23533.532920 eV Core-core repulsion = 20092.662402 eV Total energy + Delta-G solvation = -3440.870517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -43.95917 -41.20931 -38.32212 -37.82562 -36.60321 -33.83165 -33.23866 -30.98798 -30.62925 -27.86317 -27.60876 -27.23135 -25.35078 -24.69055 -23.12192 -21.55426 -20.74946 -20.06885 -18.85168 -18.46528 -17.71438 -17.56887 -17.37995 -16.67318 -16.57775 -15.52543 -15.03617 -14.83086 -14.71372 -14.57942 -14.54933 -14.16386 -14.02508 -13.65376 -13.35791 -13.17032 -12.99452 -12.85376 -12.60376 -12.36405 -12.15101 -12.00807 -11.88680 -11.76031 -11.69868 -11.66199 -11.42448 -11.30808 -11.19264 -10.75188 -10.49401 -10.42051 -9.70763 -8.05165 -6.23941 0.20220 0.98909 1.42609 1.43736 1.50873 1.57626 2.01484 2.07703 2.45559 3.18064 3.30742 3.58408 3.84220 4.05855 4.14506 4.20276 4.24280 4.26526 4.34247 4.56174 4.57693 4.66534 4.72847 4.81498 4.97502 5.01672 5.05747 5.11664 5.18016 5.20171 5.25898 5.28665 5.32183 5.43165 5.50973 5.52895 5.60325 5.63052 6.02978 6.05805 6.15323 6.34779 6.58372 6.79998 6.86676 7.44134 8.95217 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037067 B = 0.003267 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.215358 B = 8567.480041 C = 9093.167935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.063 3.937 3 C -0.117 4.117 4 C -0.533 4.533 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.902 5.902 8 Si 0.957 3.043 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.095 3.905 13 O -0.343 6.343 14 C 0.539 3.461 15 O -0.526 6.526 16 C -0.023 4.023 17 N -0.260 5.260 18 N -0.349 5.349 19 H 0.465 0.535 20 C 0.032 3.968 21 C -0.163 4.163 22 C -0.047 4.047 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.044 4.044 26 H 0.025 0.975 27 H 0.065 0.935 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.262 0.738 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.643 0.961 26.297 26.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.062 3.938 3 C -0.175 4.175 4 C -0.571 4.571 5 H 0.070 0.930 6 C -0.173 4.173 7 N -0.540 5.540 8 Si 0.783 3.217 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.205 1.205 12 C 0.021 3.979 13 O -0.258 6.258 14 C 0.383 3.617 15 O -0.415 6.415 16 C -0.178 4.178 17 N -0.099 5.099 18 N -0.066 5.066 19 H 0.314 0.686 20 C -0.096 4.096 21 C -0.173 4.173 22 C -0.085 4.085 23 C -0.153 4.153 24 C -0.151 4.151 25 C -0.082 4.082 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.058 1.537 25.414 25.483 hybrid contribution 0.474 -0.683 -1.100 1.378 sum -0.584 0.854 24.314 24.336 Atomic orbital electron populations 1.21606 0.97263 0.98561 1.00057 1.18264 0.93522 0.93211 0.88781 1.21608 0.97765 0.98065 1.00057 1.21229 1.32373 1.12534 0.90994 0.92959 1.25560 0.94911 0.95563 1.01308 1.69960 1.36765 1.23416 1.23839 0.85527 0.78160 0.78645 0.79412 1.19547 1.20473 1.20482 1.23372 0.97784 0.95355 0.81356 1.86655 1.68999 1.55432 1.14702 1.20147 0.76766 0.81174 0.83616 1.90767 1.36762 1.25758 1.88182 1.20486 1.06500 0.98697 0.92160 1.74028 1.17422 1.16065 1.02382 1.43217 1.37355 1.24069 1.01967 0.68604 1.21805 0.98480 0.91907 0.97375 1.20197 1.05715 1.02271 0.89126 1.20058 0.97526 0.93482 0.97469 1.21666 0.98556 1.02906 0.92171 1.21611 0.97033 0.95154 1.01344 1.20519 1.04862 1.00023 0.82831 0.95599 0.91608 0.96019 0.96007 0.91618 0.95589 0.92795 0.92851 0.92865 0.91248 0.92213 0.91262 0.89780 0.87824 0.91781 0.87459 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.11 71.98 0.58 -5.48 16 2 C 0.06 3.28 0.58 -52.93 -0.03 3.25 16 3 C -0.12 -6.06 8.11 71.98 0.58 -5.48 16 4 C -0.53 -29.79 8.01 25.60 0.21 -29.59 16 5 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 6 C 0.03 1.45 5.15 84.65 0.44 1.89 16 7 N -0.90 -50.71 9.35 21.45 0.20 -50.51 16 8 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 C 0.09 4.59 4.27 71.98 0.31 4.89 16 13 O -0.34 -15.81 8.89 -56.38 -0.50 -16.31 16 14 C 0.54 22.79 7.97 70.29 0.56 23.35 16 15 O -0.53 -23.31 15.59 19.87 0.31 -23.00 16 16 C -0.02 -0.81 7.16 42.11 0.30 -0.51 16 17 N -0.26 -8.18 12.27 -48.66 -0.60 -8.77 16 18 N -0.35 -6.87 6.82 -48.18 -0.33 -7.20 16 19 H 0.46 4.79 8.96 -219.80 -1.97 2.82 16 20 C 0.03 0.59 7.12 41.56 0.30 0.88 16 21 C -0.16 -4.38 5.99 -20.02 -0.12 -4.50 16 22 C -0.05 -1.10 5.54 29.91 0.17 -0.93 16 23 C -0.12 -1.56 5.91 30.79 0.18 -1.38 16 24 C -0.11 -0.96 5.89 30.76 0.18 -0.78 16 25 C -0.04 -0.34 6.31 29.98 0.19 -0.15 16 26 H 0.02 1.25 7.68 -2.39 -0.02 1.23 16 27 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 28 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 3.63 6.07 -2.38 -0.01 3.61 16 31 H 0.03 1.25 7.68 -2.39 -0.02 1.23 16 32 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.66 7.67 -2.39 -0.02 1.64 16 37 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.06 0.65 8.11 -2.39 -0.02 0.63 16 41 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -71.01 339.57 4.01 -67.00 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -0.94 Total: 7.61 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 3.84 Total: -14.53 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -0.72 Total: -66.48 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.19 Total: -39.31 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -71.01 4.01 -67.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184813590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.221 kcal (2) G-P(sol) polarization free energy of solvation -71.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds