Wall clock time and date at job start Tue Mar 31 2020 06:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46702 * 2 1 4 4 H 1.09002 * 109.46996 * 304.77746 * 3 2 1 5 5 C 1.50699 * 109.46752 * 184.77733 * 3 2 1 6 6 H 1.07999 * 119.99888 * 245.44960 * 5 3 2 7 7 C 1.37881 * 120.00110 * 65.45240 * 5 3 2 8 8 N 1.31511 * 119.99940 * 9.49104 * 7 5 3 9 9 Si 1.86792 * 120.00123 * 189.48748 * 7 5 3 10 10 H 1.48504 * 109.47106 * 84.99335 * 9 7 5 11 11 H 1.48497 * 109.47551 * 204.99350 * 9 7 5 12 12 H 1.48504 * 109.47217 * 324.99463 * 9 7 5 13 13 O 1.45197 * 109.47066 * 64.77605 * 3 2 1 14 14 C 1.34729 * 117.00233 * 269.99679 * 13 3 2 15 15 O 1.21494 * 119.99721 * 0.02562 * 14 13 3 16 16 C 1.47581 * 120.00334 * 180.02562 * 14 13 3 17 17 N 1.32096 * 126.65385 * 0.03110 * 16 14 13 18 18 N 1.28671 * 110.09788 * 179.89424 * 17 16 14 19 19 H 0.97003 * 124.93860 * 179.58402 * 18 17 16 20 20 C 1.34772 * 110.11891 * 359.58606 * 18 17 16 21 21 C 1.35176 * 107.18735 * 0.77252 * 20 18 17 22 22 C 1.50381 * 126.23515 * 178.48689 * 21 20 18 23 23 C 1.53213 * 109.08942 * 27.88936 * 22 21 20 24 24 C 1.52656 * 109.60625 * 271.32450 * 23 22 21 25 25 C 1.52604 * 110.81084 * 61.52287 * 24 23 22 26 26 C 1.50690 * 127.36320 * 180.89140 * 20 18 17 27 27 H 1.08994 * 109.47559 * 60.00919 * 1 2 3 28 28 H 1.09004 * 109.46602 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47374 * 299.99927 * 1 2 3 30 30 H 1.08998 * 109.47374 * 240.00073 * 2 1 3 31 31 H 1.09003 * 109.46992 * 119.99651 * 2 1 3 32 32 H 0.97004 * 120.00179 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.53560 * 147.77636 * 22 21 20 34 34 H 1.08994 * 109.53587 * 267.93153 * 22 21 20 35 35 H 1.08996 * 109.45275 * 151.27916 * 23 22 21 36 36 H 1.09006 * 109.44462 * 31.35782 * 23 22 21 37 37 H 1.08997 * 109.20589 * 301.17660 * 24 23 22 38 38 H 1.09001 * 109.20604 * 181.86530 * 24 23 22 39 39 H 1.09009 * 109.40905 * 153.72788 * 25 24 23 40 40 H 1.08993 * 109.41471 * 273.51479 * 25 24 23 41 41 H 1.08999 * 109.52491 * 107.10808 * 26 20 18 42 42 H 1.09005 * 109.57878 * 346.94507 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6083 1.9805 -0.8441 5 6 3.5423 1.4442 -0.1183 6 1 4.1478 1.8097 0.6979 7 6 4.1437 0.9793 -1.2686 8 7 3.4144 0.7103 -2.3294 9 14 5.9944 0.7315 -1.3203 10 1 6.3300 -0.6078 -0.7733 11 1 6.4675 0.8252 -2.7248 12 1 6.6573 1.7799 -0.5037 13 8 1.6512 2.0933 1.2384 14 6 0.4636 2.7294 1.2485 15 8 -0.2285 2.7397 0.2501 16 6 0.0033 3.4137 2.4725 17 7 0.6456 3.4858 3.6245 18 7 -0.0453 4.1611 4.4744 19 1 0.2217 4.3413 5.3894 20 6 -1.1939 4.5816 3.9084 21 6 -1.2069 4.1174 2.6389 22 6 -2.3082 4.3103 1.6332 23 6 -3.0527 5.6116 1.9487 24 6 -4.1858 5.3282 2.9316 25 6 -3.6384 4.7822 4.2473 26 6 -2.2757 5.4150 4.5454 27 1 -0.3634 0.5136 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8375 0.3828 -3.1386 33 1 -1.8814 4.3681 0.6319 34 1 -3.0012 3.4707 1.6861 35 1 -3.4653 6.0260 1.0289 36 1 -2.3600 6.3281 2.3904 37 1 -4.8650 4.5963 2.4945 38 1 -4.7314 6.2516 3.1259 39 1 -4.3320 5.0188 5.0543 40 1 -3.5269 3.7006 4.1723 41 1 -2.2458 6.4250 4.1366 42 1 -2.1199 5.4537 5.6235 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191339597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:06 Heat of formation + Delta-G solvation = -36.285431 kcal Electronic energy + Delta-G solvation = -23995.420106 eV Core-core repulsion = 20555.264780 eV Total energy + Delta-G solvation = -3440.155326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.76264 -39.21664 -37.68160 -35.67188 -33.37589 -32.91472 -31.41118 -31.09918 -30.40769 -27.26228 -25.58530 -24.62401 -24.37839 -22.87981 -20.43511 -19.91476 -19.68141 -19.23016 -17.71921 -16.88521 -16.45160 -15.99357 -15.37275 -15.30722 -14.80891 -14.66186 -14.38169 -13.54547 -13.39435 -13.34037 -12.96822 -12.76680 -12.44628 -12.05428 -11.85188 -11.49410 -11.38706 -11.31203 -11.19038 -11.13580 -10.91829 -10.89628 -10.60740 -10.58536 -10.30315 -10.19810 -9.79351 -9.61770 -9.31292 -9.19250 -8.75179 -8.58457 -8.39057 -6.13760 -4.16461 1.78076 2.14273 2.85953 3.30347 3.35299 3.38824 3.72615 3.79916 4.37722 4.46437 4.54139 4.64522 4.86249 4.94097 5.00362 5.14786 5.19266 5.28013 5.30627 5.61908 5.65486 5.78911 5.86584 5.92961 6.01183 6.04853 6.10572 6.25258 6.29042 6.31901 6.35643 6.45973 6.62148 6.91835 7.01029 7.05418 7.20132 7.25796 7.63978 7.75845 7.90314 7.99659 8.20890 8.73732 8.99916 9.47033 10.95399 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027941 B = 0.003853 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.888903 B = 7264.718547 C = 7696.628098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.055 0.945 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.907 3.093 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.340 6.340 14 C 0.541 3.459 15 O -0.504 6.504 16 C 0.016 3.984 17 N -0.232 5.232 18 N -0.381 5.381 19 H 0.443 0.557 20 C 0.004 3.996 21 C -0.137 4.137 22 C -0.047 4.047 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.115 4.115 26 C -0.047 4.047 27 H 0.056 0.944 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.266 0.734 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.186 9.287 13.720 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.166 3.834 4 H 0.073 0.927 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.734 3.266 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.197 1.197 13 O -0.255 6.255 14 C 0.382 3.618 15 O -0.392 6.392 16 C -0.143 4.143 17 N -0.068 5.068 18 N -0.095 5.095 19 H 0.287 0.713 20 C -0.122 4.122 21 C -0.147 4.147 22 C -0.085 4.085 23 C -0.161 4.161 24 C -0.158 4.158 25 C -0.153 4.153 26 C -0.085 4.085 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.340 8.823 13.645 21.024 hybrid contribution 0.508 0.029 0.004 0.509 sum -12.832 8.852 13.649 20.720 Atomic orbital electron populations 1.21866 0.98056 0.99111 1.01094 1.21920 0.93016 0.99393 1.02236 1.20725 0.95150 0.88537 0.78977 0.92678 1.21000 0.89561 1.43536 1.01923 0.91295 1.24876 0.99009 0.95229 0.94598 1.69990 1.35944 1.44151 1.02204 0.86370 0.84205 0.78892 0.77166 1.20272 1.21108 1.19689 1.86623 1.33105 1.61885 1.43866 1.19452 0.81042 0.76304 0.84968 1.90778 1.56044 1.58823 1.33582 1.21016 0.94999 1.05654 0.92638 1.73988 1.20680 1.12341 0.99826 1.43275 1.14024 1.38837 1.13408 0.71285 1.21078 0.91586 1.05193 0.94296 1.19862 0.96999 1.02836 0.94966 1.20018 0.93682 0.97175 0.97652 1.21707 0.97328 0.97851 0.99187 1.21520 0.97997 1.00954 0.95289 1.21524 0.94805 1.01139 0.97797 1.20212 0.91024 0.97958 0.99332 0.92524 0.94785 0.94659 0.89233 0.93643 0.92459 0.89171 0.90740 0.91504 0.91394 0.91679 0.92155 0.91357 0.91330 0.89175 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.56 37.16 0.32 -2.90 16 2 C -0.13 -3.23 5.54 -26.73 -0.15 -3.37 16 3 C 0.22 6.02 2.12 -27.88 -0.06 5.97 16 4 H 0.06 1.67 7.10 -51.93 -0.37 1.30 16 5 C -0.52 -15.13 8.82 -34.44 -0.30 -15.44 16 6 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 7 C 0.07 1.84 5.16 -17.82 -0.09 1.75 16 8 N -0.89 -25.65 12.16 55.43 0.67 -24.98 16 9 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 13 O -0.34 -8.76 9.81 -40.57 -0.40 -9.16 16 14 C 0.54 12.45 6.41 34.54 0.22 12.67 16 15 O -0.50 -12.01 12.43 -19.26 -0.24 -12.25 16 16 C 0.02 0.30 7.17 -82.90 -0.59 -0.29 16 17 N -0.23 -4.06 12.26 33.33 0.41 -3.65 16 18 N -0.38 -4.67 6.83 33.42 0.23 -4.44 16 19 H 0.44 3.47 8.96 -190.32 -1.71 1.77 16 20 C 0.00 0.05 6.38 -82.40 -0.53 -0.48 16 21 C -0.14 -2.09 5.68 -104.83 -0.60 -2.68 16 22 C -0.05 -0.64 5.29 -27.93 -0.15 -0.79 16 23 C -0.12 -1.21 5.54 -26.80 -0.15 -1.36 16 24 C -0.12 -0.92 5.64 -27.11 -0.15 -1.07 16 25 C -0.11 -0.85 5.63 -26.85 -0.15 -1.00 16 26 C -0.05 -0.35 5.55 -27.80 -0.15 -0.51 16 27 H 0.06 1.31 7.78 -51.93 -0.40 0.91 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.78 6.06 -51.93 -0.31 0.46 16 30 H 0.09 2.41 6.81 -51.93 -0.35 2.05 16 31 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.09 1.43 6.89 -51.93 -0.36 1.07 16 34 H 0.07 0.98 7.83 -51.93 -0.41 0.57 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.66 5.66 -51.93 -0.29 0.36 16 37 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 40 H 0.07 0.61 7.79 -51.93 -0.40 0.21 16 41 H 0.09 0.62 6.35 -51.93 -0.33 0.29 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -32.89 332.17 -9.32 -42.20 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.44 Total: 0.22 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -2.53 Total: -9.50 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 1.31 Total: -33.06 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.64 Total: -21.41 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.89 -9.32 -42.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191339597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.919 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds