Wall clock time and date at job start Tue Mar 31 2020 06:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46702 * 2 1 4 4 H 1.09002 * 109.46996 * 304.77746 * 3 2 1 5 5 C 1.50699 * 109.46752 * 184.77733 * 3 2 1 6 6 H 1.07999 * 119.99888 * 245.44960 * 5 3 2 7 7 C 1.37881 * 120.00110 * 65.45240 * 5 3 2 8 8 N 1.31511 * 119.99940 * 9.49104 * 7 5 3 9 9 Si 1.86792 * 120.00123 * 189.48748 * 7 5 3 10 10 H 1.48504 * 109.47106 * 84.99335 * 9 7 5 11 11 H 1.48497 * 109.47551 * 204.99350 * 9 7 5 12 12 H 1.48504 * 109.47217 * 324.99463 * 9 7 5 13 13 O 1.45197 * 109.47066 * 64.77605 * 3 2 1 14 14 C 1.34729 * 117.00233 * 269.99679 * 13 3 2 15 15 O 1.21494 * 119.99721 * 0.02562 * 14 13 3 16 16 C 1.47581 * 120.00334 * 180.02562 * 14 13 3 17 17 N 1.32096 * 126.65385 * 0.03110 * 16 14 13 18 18 N 1.28671 * 110.09788 * 179.89424 * 17 16 14 19 19 H 0.97003 * 124.93860 * 179.58402 * 18 17 16 20 20 C 1.34772 * 110.11891 * 359.58606 * 18 17 16 21 21 C 1.35176 * 107.18735 * 0.77252 * 20 18 17 22 22 C 1.50381 * 126.23515 * 178.48689 * 21 20 18 23 23 C 1.53213 * 109.08942 * 27.88936 * 22 21 20 24 24 C 1.52656 * 109.60625 * 271.32450 * 23 22 21 25 25 C 1.52604 * 110.81084 * 61.52287 * 24 23 22 26 26 C 1.50690 * 127.36320 * 180.89140 * 20 18 17 27 27 H 1.08994 * 109.47559 * 60.00919 * 1 2 3 28 28 H 1.09004 * 109.46602 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47374 * 299.99927 * 1 2 3 30 30 H 1.08998 * 109.47374 * 240.00073 * 2 1 3 31 31 H 1.09003 * 109.46992 * 119.99651 * 2 1 3 32 32 H 0.97004 * 120.00179 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.53560 * 147.77636 * 22 21 20 34 34 H 1.08994 * 109.53587 * 267.93153 * 22 21 20 35 35 H 1.08996 * 109.45275 * 151.27916 * 23 22 21 36 36 H 1.09006 * 109.44462 * 31.35782 * 23 22 21 37 37 H 1.08997 * 109.20589 * 301.17660 * 24 23 22 38 38 H 1.09001 * 109.20604 * 181.86530 * 24 23 22 39 39 H 1.09009 * 109.40905 * 153.72788 * 25 24 23 40 40 H 1.08993 * 109.41471 * 273.51479 * 25 24 23 41 41 H 1.08999 * 109.52491 * 107.10808 * 26 20 18 42 42 H 1.09005 * 109.57878 * 346.94507 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6083 1.9805 -0.8441 5 6 3.5423 1.4442 -0.1183 6 1 4.1478 1.8097 0.6979 7 6 4.1437 0.9793 -1.2686 8 7 3.4144 0.7103 -2.3294 9 14 5.9944 0.7315 -1.3203 10 1 6.3300 -0.6078 -0.7733 11 1 6.4675 0.8252 -2.7248 12 1 6.6573 1.7799 -0.5037 13 8 1.6512 2.0933 1.2384 14 6 0.4636 2.7294 1.2485 15 8 -0.2285 2.7397 0.2501 16 6 0.0033 3.4137 2.4725 17 7 0.6456 3.4858 3.6245 18 7 -0.0453 4.1611 4.4744 19 1 0.2217 4.3413 5.3894 20 6 -1.1939 4.5816 3.9084 21 6 -1.2069 4.1174 2.6389 22 6 -2.3082 4.3103 1.6332 23 6 -3.0527 5.6116 1.9487 24 6 -4.1858 5.3282 2.9316 25 6 -3.6384 4.7822 4.2473 26 6 -2.2757 5.4150 4.5454 27 1 -0.3634 0.5136 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8375 0.3828 -3.1386 33 1 -1.8814 4.3681 0.6319 34 1 -3.0012 3.4707 1.6861 35 1 -3.4653 6.0260 1.0289 36 1 -2.3600 6.3281 2.3904 37 1 -4.8650 4.5963 2.4945 38 1 -4.7314 6.2516 3.1259 39 1 -4.3320 5.0188 5.0543 40 1 -3.5269 3.7006 4.1723 41 1 -2.2458 6.4250 4.1366 42 1 -2.1199 5.4537 5.6235 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191339597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:06 Heat of formation + Delta-G solvation = -56.654481 kcal Electronic energy + Delta-G solvation = -23996.303374 eV Core-core repulsion = 20555.264780 eV Total energy + Delta-G solvation = -3441.038594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.94063 -41.11023 -38.48329 -37.60509 -35.45975 -34.04682 -33.43543 -32.05228 -31.45916 -29.35387 -26.48329 -26.16373 -25.34847 -24.84057 -22.28901 -21.10418 -20.87385 -20.46895 -18.87651 -18.76044 -18.24110 -17.38114 -17.24563 -16.65779 -16.34309 -15.88250 -15.50531 -14.93083 -14.84247 -14.42209 -14.31195 -14.05997 -13.98906 -13.48622 -13.32232 -13.26078 -13.12120 -12.83466 -12.66570 -12.55144 -12.31739 -12.15935 -12.10286 -11.81914 -11.63704 -11.57275 -11.40459 -11.32859 -11.06874 -10.83993 -10.57662 -10.43826 -9.67974 -8.31052 -6.44303 0.31432 1.02382 1.39489 1.42776 1.52327 1.70198 2.13696 2.19264 2.43194 2.99599 3.40411 3.61728 3.89745 4.01930 4.07731 4.20934 4.26559 4.33109 4.34761 4.39345 4.51397 4.54332 4.65267 4.81702 4.88652 4.96165 5.02388 5.04100 5.07577 5.15328 5.17732 5.25516 5.32549 5.37064 5.44112 5.48809 5.51155 5.57971 5.61132 5.84122 6.07078 6.11491 6.58084 6.74098 7.02297 7.26014 8.78662 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027941 B = 0.003853 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.888903 B = 7264.718547 C = 7696.628098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.120 4.120 3 C 0.222 3.778 4 H 0.015 0.985 5 C -0.555 4.555 6 H 0.061 0.939 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.979 3.021 10 H -0.265 1.265 11 H -0.275 1.275 12 H -0.268 1.268 13 O -0.355 6.355 14 C 0.534 3.466 15 O -0.524 6.524 16 C -0.026 4.026 17 N -0.260 5.260 18 N -0.354 5.354 19 H 0.464 0.536 20 C 0.036 3.964 21 C -0.156 4.156 22 C -0.046 4.046 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.114 4.114 26 C -0.046 4.046 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.272 0.728 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.049 0.951 41 H 0.107 0.893 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.144 10.498 16.358 24.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.158 4.158 3 C 0.169 3.831 4 H 0.033 0.967 5 C -0.592 4.592 6 H 0.079 0.921 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.801 3.199 10 H -0.190 1.190 11 H -0.200 1.200 12 H -0.193 1.193 13 O -0.271 6.271 14 C 0.377 3.623 15 O -0.413 6.413 16 C -0.182 4.182 17 N -0.099 5.099 18 N -0.071 5.071 19 H 0.313 0.687 20 C -0.091 4.091 21 C -0.166 4.166 22 C -0.084 4.084 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.152 4.152 26 C -0.084 4.084 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.125 0.875 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.310 10.038 16.305 23.904 hybrid contribution 0.725 -0.265 -0.753 1.078 sum -13.585 9.773 15.552 22.846 Atomic orbital electron populations 1.21709 0.95920 1.00886 1.00206 1.21763 0.94866 0.97757 1.01395 1.20470 0.94705 0.89310 0.78595 0.96711 1.21253 0.90358 1.45119 1.02493 0.92123 1.25792 1.04185 0.94133 0.93714 1.70100 1.38170 1.44000 1.02738 0.85269 0.77695 0.79236 0.77651 1.18973 1.19991 1.19266 1.86603 1.34984 1.62728 1.42790 1.20113 0.79890 0.75819 0.86438 1.90745 1.56184 1.59525 1.34814 1.20737 0.97325 1.08075 0.92021 1.73863 1.21952 1.13981 1.00070 1.43367 1.13481 1.36591 1.13694 0.68671 1.21704 0.91491 1.03094 0.92803 1.20147 0.96195 1.03234 0.96985 1.20002 0.93477 0.99419 0.95542 1.21689 0.97857 0.95529 1.00372 1.21517 0.97028 1.02139 0.94797 1.21546 0.95227 0.99882 0.98511 1.20496 0.89053 0.97520 1.01321 0.94040 0.91507 0.94883 0.91031 0.93195 0.91925 0.92787 0.91085 0.91098 0.90818 0.92011 0.89668 0.88340 0.93257 0.87455 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.01 8.56 71.98 0.62 -5.40 16 2 C -0.12 -6.32 5.54 30.60 0.17 -6.15 16 3 C 0.22 13.00 2.12 29.85 0.06 13.06 16 4 H 0.02 0.98 7.10 -2.39 -0.02 0.96 16 5 C -0.55 -33.52 8.82 25.60 0.23 -33.30 16 6 H 0.06 3.66 7.83 -2.91 -0.02 3.64 16 7 C 0.02 1.28 5.16 84.66 0.44 1.72 16 8 N -0.91 -54.39 12.16 21.45 0.26 -54.13 16 9 Si 0.98 44.66 29.55 68.60 2.03 46.69 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 O -0.36 -19.49 9.81 -56.39 -0.55 -20.04 16 14 C 0.53 26.25 6.41 70.29 0.45 26.70 16 15 O -0.52 -26.95 12.43 19.86 0.25 -26.71 16 16 C -0.03 -1.02 7.17 42.24 0.30 -0.72 16 17 N -0.26 -9.14 12.26 -48.46 -0.59 -9.73 16 18 N -0.35 -7.94 6.83 -48.18 -0.33 -8.27 16 19 H 0.46 5.81 8.96 -219.89 -1.97 3.84 16 20 C 0.04 0.76 6.38 41.40 0.26 1.03 16 21 C -0.16 -4.76 5.68 -20.00 -0.11 -4.87 16 22 C -0.05 -1.28 5.29 29.82 0.16 -1.12 16 23 C -0.12 -2.11 5.54 30.55 0.17 -1.94 16 24 C -0.12 -1.42 5.64 30.35 0.17 -1.25 16 25 C -0.11 -1.21 5.63 30.52 0.17 -1.04 16 26 C -0.05 -0.47 5.55 29.90 0.17 -0.31 16 27 H 0.04 2.01 7.78 -2.39 -0.02 1.99 16 28 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 29 H 0.03 1.51 6.06 -2.39 -0.01 1.49 16 30 H 0.07 4.00 6.81 -2.39 -0.02 3.99 16 31 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.05 1.86 6.89 -2.39 -0.02 1.84 16 34 H 0.07 1.95 7.83 -2.39 -0.02 1.93 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.24 5.66 -2.38 -0.01 1.22 16 37 H 0.06 0.81 8.09 -2.39 -0.02 0.79 16 38 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.05 0.74 7.79 -2.39 -0.02 0.73 16 41 H 0.11 0.91 6.35 -2.39 -0.02 0.89 16 42 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 Total: -1.00 -77.08 332.17 3.38 -73.70 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -0.93 Total: 12.08 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 3.25 Total: -13.59 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -0.66 Total: -72.13 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -0.31 Total: -46.75 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -77.08 3.38 -73.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191339597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.043 kcal (2) G-P(sol) polarization free energy of solvation -77.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds