Wall clock time and date at job start Tue Mar 31 2020 06:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.08997 * 109.47091 * 55.00392 * 3 2 1 5 5 C 1.50703 * 109.46967 * 175.00268 * 3 2 1 6 6 H 1.07996 * 119.99621 * 119.99895 * 5 3 2 7 7 C 1.37869 * 120.00070 * 299.99964 * 5 3 2 8 8 N 1.31521 * 119.99915 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47111 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47182 * 120.00081 * 9 7 5 12 12 H 1.48499 * 109.47164 * 240.00051 * 9 7 5 13 13 N 1.46501 * 109.47309 * 295.00167 * 3 2 1 14 14 C 1.34776 * 119.99926 * 85.27527 * 13 3 2 15 15 O 1.21591 * 119.99937 * 359.72610 * 14 13 3 16 16 N 1.34773 * 120.00081 * 179.72408 * 14 13 3 17 17 C 1.39946 * 120.00246 * 175.37992 * 16 14 13 18 18 C 1.38862 * 120.07206 * 214.81634 * 17 16 14 19 19 C 1.38113 * 119.93034 * 179.76679 * 18 17 16 20 20 C 1.38284 * 120.06849 * 0.50598 * 19 18 17 21 21 C 1.50703 * 119.92720 * 179.72085 * 20 19 18 22 22 O 1.42894 * 109.47247 * 270.02204 * 21 20 19 23 23 C 1.42901 * 114.00217 * 180.02562 * 22 21 20 24 24 C 1.38275 * 120.14130 * 359.74704 * 20 19 18 25 25 C 1.38121 * 120.06968 * 359.97438 * 24 20 19 26 26 H 1.09001 * 109.47076 * 299.99228 * 1 2 3 27 27 H 1.08995 * 109.47576 * 59.99933 * 1 2 3 28 28 H 1.09009 * 109.47364 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46565 * 240.00222 * 2 1 3 30 30 H 1.08995 * 109.47360 * 120.00575 * 2 1 3 31 31 H 0.97007 * 120.00071 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00098 * 265.00172 * 13 3 2 33 33 H 0.96995 * 120.00043 * 355.38323 * 16 14 13 34 34 H 1.07997 * 120.03860 * 359.97438 * 18 17 16 35 35 H 1.08003 * 119.96602 * 180.25399 * 19 18 17 36 36 H 1.08992 * 109.47400 * 30.02691 * 21 20 19 37 37 H 1.09002 * 109.46612 * 150.02578 * 21 20 19 38 38 H 1.08995 * 109.47037 * 60.00296 * 23 22 21 39 39 H 1.08997 * 109.47387 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.46954 * 300.00178 * 23 22 21 41 41 H 1.08002 * 119.96826 * 180.02562 * 24 20 19 42 42 H 1.07996 * 120.03604 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4062 0.3366 2.1727 9 14 6.0049 0.8813 1.3816 10 1 6.5987 1.5463 0.1940 11 1 6.3990 1.6167 2.6100 12 1 6.4971 -0.5174 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3650 15 8 -0.3394 2.6371 -0.4299 16 7 0.0826 3.2767 -2.5146 17 6 -1.2122 3.7853 -2.6670 18 6 -1.8353 3.7420 -3.9072 19 6 -3.1151 4.2403 -4.0532 20 6 -3.7719 4.7915 -2.9683 21 6 -5.1659 5.3401 -3.1326 22 8 -5.0951 6.7219 -3.4894 23 6 -6.3699 7.3418 -3.6698 24 6 -3.1522 4.8409 -1.7332 25 6 -1.8747 4.3390 -1.5794 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8294 -0.0619 2.9494 32 1 2.2718 2.1232 -1.9978 33 1 0.7249 3.3614 -3.2365 34 1 -1.3211 3.3160 -4.7560 35 1 -3.6018 4.2032 -5.0166 36 1 -5.6834 4.7883 -3.9173 37 1 -5.7108 5.2346 -2.1945 38 1 -6.9394 7.2779 -2.7426 39 1 -6.2301 8.3887 -3.9392 40 1 -6.9127 6.8316 -4.4655 41 1 -3.6680 5.2716 -0.8877 42 1 -1.3910 4.3782 -0.6146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192598984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:01 Heat of formation + Delta-G solvation = -50.950277 kcal Electronic energy + Delta-G solvation = -22927.099930 eV Core-core repulsion = 19486.308689 eV Total energy + Delta-G solvation = -3440.791241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.25809 -38.86714 -37.61160 -35.45950 -34.22091 -32.47456 -31.22277 -30.80088 -30.18906 -27.32654 -26.69423 -25.08820 -23.10285 -22.81568 -21.60643 -20.43535 -19.52669 -18.19492 -17.45422 -16.56726 -16.23729 -16.10261 -15.90033 -15.15261 -15.01462 -14.45135 -14.23395 -14.20628 -13.46052 -13.39841 -13.15304 -12.83308 -12.65519 -12.40156 -12.13379 -11.77681 -11.56404 -11.30985 -11.24947 -11.07995 -10.95560 -10.86086 -10.31255 -10.19684 -9.99338 -9.90438 -9.59369 -9.33947 -9.04391 -8.75609 -8.52404 -8.02310 -7.68715 -6.14190 -4.23503 1.35028 1.56526 3.19107 3.22723 3.31141 3.34153 3.48722 3.85878 4.18262 4.30980 4.78613 4.83125 4.94867 5.06556 5.08543 5.13317 5.17615 5.21489 5.25124 5.40210 5.52365 5.75357 5.85246 6.13856 6.37901 6.40979 6.48249 6.51699 6.66736 6.68847 6.77978 6.93490 7.02397 7.11989 7.27578 7.35240 7.37562 7.45342 7.63417 7.85531 7.97563 8.17447 8.72244 8.83402 9.24157 9.45115 10.91176 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037771 B = 0.002810 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.136533 B = 9962.189628 C =10069.210234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.718 5.718 14 C 0.692 3.308 15 O -0.575 6.575 16 N -0.698 5.698 17 C 0.189 3.811 18 C -0.160 4.160 19 C -0.080 4.080 20 C -0.125 4.125 21 C 0.108 3.892 22 O -0.386 6.386 23 C 0.030 3.970 24 C -0.079 4.079 25 C -0.123 4.123 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.021 0.979 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.402 0.598 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.122 0.878 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.799 8.360 -12.704 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.369 5.369 14 C 0.393 3.607 15 O -0.453 6.453 16 N -0.346 5.346 17 C 0.093 3.907 18 C -0.181 4.181 19 C -0.099 4.099 20 C -0.126 4.126 21 C 0.032 3.968 22 O -0.305 6.305 23 C -0.067 4.067 24 C -0.098 4.098 25 C -0.144 4.144 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.218 0.782 33 H 0.237 0.763 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.058 0.942 41 H 0.140 0.860 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.205 8.234 -11.594 20.100 hybrid contribution 1.325 -0.199 -0.615 1.475 sum -12.880 8.034 -12.209 19.481 Atomic orbital electron populations 1.21810 0.98249 0.97907 1.01280 1.21953 0.92707 0.99840 1.02219 1.18733 0.94026 0.88919 0.79927 0.93179 1.21257 0.90649 1.39005 1.06308 0.92048 1.24881 0.98637 0.94807 0.95375 1.69910 1.35038 1.37571 1.09353 0.86390 0.84801 0.77764 0.78112 1.19781 1.20873 1.20881 1.45844 1.13413 1.58326 1.19346 1.16115 0.83681 0.78689 0.82218 1.90886 1.51705 1.64791 1.37871 1.42901 1.12173 1.61062 1.18449 1.17614 0.84889 0.94023 0.94190 1.20821 0.95668 1.04891 0.96754 1.20682 0.93877 0.97540 0.97783 1.19424 0.96023 1.02916 0.94231 1.21292 0.94155 0.82030 0.99320 1.87996 1.28458 1.23612 1.90457 1.22740 0.85793 0.98409 0.99714 1.20921 0.94532 0.97774 0.96536 1.21427 0.95442 0.97535 0.99992 0.93139 0.94315 0.96003 0.95108 0.88254 0.92582 0.78228 0.76328 0.85859 0.86095 0.92731 0.92604 0.94103 0.89705 0.94196 0.86001 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.73 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.29 7.07 2.24 -69.08 -0.15 6.92 16 4 H 0.05 1.44 7.57 -51.93 -0.39 1.05 16 5 C -0.53 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.44 11.29 55.43 0.63 -23.81 16 9 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.72 -14.55 5.02 -59.81 -0.30 -14.85 16 14 C 0.69 13.64 6.99 -86.92 -0.61 13.04 16 15 O -0.58 -13.19 10.92 5.29 0.06 -13.14 16 16 N -0.70 -10.72 5.34 -14.22 -0.08 -10.79 16 17 C 0.19 2.89 6.30 -83.69 -0.53 2.36 16 18 C -0.16 -2.02 9.97 -39.40 -0.39 -2.42 16 19 C -0.08 -0.95 9.69 -39.61 -0.38 -1.34 16 20 C -0.12 -1.57 5.51 -104.59 -0.58 -2.14 16 21 C 0.11 1.11 6.06 36.01 0.22 1.33 16 22 O -0.39 -4.36 10.69 -35.23 -0.38 -4.73 16 23 C 0.03 0.22 11.01 101.05 1.11 1.33 16 24 C -0.08 -1.10 9.69 -39.61 -0.38 -1.48 16 25 C -0.12 -2.00 8.70 -39.39 -0.34 -2.34 16 26 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 27 H 0.04 0.86 5.66 -51.93 -0.29 0.57 16 28 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.39 6.70 8.56 -40.82 -0.35 6.35 16 33 H 0.40 4.78 8.84 -40.82 -0.36 4.42 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.05 0.47 8.08 -51.93 -0.42 0.05 16 37 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 38 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.15 2.69 6.22 -52.49 -0.33 2.36 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -30.78 346.01 -8.34 -39.12 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -6.20 Total: 10.82 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.26 Total: -3.22 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.25 Total: -49.45 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.32 Total: -17.87 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.78 -8.34 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192598984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.827 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds