Wall clock time and date at job start Tue Mar 31 2020 06:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.08997 * 109.47091 * 55.00392 * 3 2 1 5 5 C 1.50703 * 109.46967 * 175.00268 * 3 2 1 6 6 H 1.07996 * 119.99621 * 119.99895 * 5 3 2 7 7 C 1.37869 * 120.00070 * 299.99964 * 5 3 2 8 8 N 1.31521 * 119.99915 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47111 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47182 * 120.00081 * 9 7 5 12 12 H 1.48499 * 109.47164 * 240.00051 * 9 7 5 13 13 N 1.46501 * 109.47309 * 295.00167 * 3 2 1 14 14 C 1.34776 * 119.99926 * 85.27527 * 13 3 2 15 15 O 1.21591 * 119.99937 * 359.72610 * 14 13 3 16 16 N 1.34773 * 120.00081 * 179.72408 * 14 13 3 17 17 C 1.39946 * 120.00246 * 175.37992 * 16 14 13 18 18 C 1.38862 * 120.07206 * 214.81634 * 17 16 14 19 19 C 1.38113 * 119.93034 * 179.76679 * 18 17 16 20 20 C 1.38284 * 120.06849 * 0.50598 * 19 18 17 21 21 C 1.50703 * 119.92720 * 179.72085 * 20 19 18 22 22 O 1.42894 * 109.47247 * 270.02204 * 21 20 19 23 23 C 1.42901 * 114.00217 * 180.02562 * 22 21 20 24 24 C 1.38275 * 120.14130 * 359.74704 * 20 19 18 25 25 C 1.38121 * 120.06968 * 359.97438 * 24 20 19 26 26 H 1.09001 * 109.47076 * 299.99228 * 1 2 3 27 27 H 1.08995 * 109.47576 * 59.99933 * 1 2 3 28 28 H 1.09009 * 109.47364 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46565 * 240.00222 * 2 1 3 30 30 H 1.08995 * 109.47360 * 120.00575 * 2 1 3 31 31 H 0.97007 * 120.00071 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00098 * 265.00172 * 13 3 2 33 33 H 0.96995 * 120.00043 * 355.38323 * 16 14 13 34 34 H 1.07997 * 120.03860 * 359.97438 * 18 17 16 35 35 H 1.08003 * 119.96602 * 180.25399 * 19 18 17 36 36 H 1.08992 * 109.47400 * 30.02691 * 21 20 19 37 37 H 1.09002 * 109.46612 * 150.02578 * 21 20 19 38 38 H 1.08995 * 109.47037 * 60.00296 * 23 22 21 39 39 H 1.08997 * 109.47387 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.46954 * 300.00178 * 23 22 21 41 41 H 1.08002 * 119.96826 * 180.02562 * 24 20 19 42 42 H 1.07996 * 120.03604 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4062 0.3366 2.1727 9 14 6.0049 0.8813 1.3816 10 1 6.5987 1.5463 0.1940 11 1 6.3990 1.6167 2.6100 12 1 6.4971 -0.5174 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3650 15 8 -0.3394 2.6371 -0.4299 16 7 0.0826 3.2767 -2.5146 17 6 -1.2122 3.7853 -2.6670 18 6 -1.8353 3.7420 -3.9072 19 6 -3.1151 4.2403 -4.0532 20 6 -3.7719 4.7915 -2.9683 21 6 -5.1659 5.3401 -3.1326 22 8 -5.0951 6.7219 -3.4894 23 6 -6.3699 7.3418 -3.6698 24 6 -3.1522 4.8409 -1.7332 25 6 -1.8747 4.3390 -1.5794 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8294 -0.0619 2.9494 32 1 2.2718 2.1232 -1.9978 33 1 0.7249 3.3614 -3.2365 34 1 -1.3211 3.3160 -4.7560 35 1 -3.6018 4.2032 -5.0166 36 1 -5.6834 4.7883 -3.9173 37 1 -5.7108 5.2346 -2.1945 38 1 -6.9394 7.2779 -2.7426 39 1 -6.2301 8.3887 -3.9392 40 1 -6.9127 6.8316 -4.4655 41 1 -3.6680 5.2716 -0.8877 42 1 -1.3910 4.3782 -0.6146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192598984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:00 Heat of formation + Delta-G solvation = -71.471541 kcal Electronic energy + Delta-G solvation = -22927.989799 eV Core-core repulsion = 19486.308689 eV Total energy + Delta-G solvation = -3441.681110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62712 -40.04044 -38.52424 -37.13389 -35.66731 -34.33063 -32.88921 -31.85528 -31.45579 -28.96476 -27.70461 -26.03714 -24.95159 -23.95009 -22.90587 -21.81684 -21.34475 -19.77230 -18.76767 -17.86052 -17.32737 -17.20035 -16.90089 -16.81636 -16.43448 -15.99048 -15.53352 -15.24984 -14.96558 -14.60735 -14.45531 -14.25917 -14.10292 -13.62276 -13.45902 -13.18542 -13.09627 -12.85678 -12.70788 -12.53085 -12.21052 -12.15560 -12.07805 -12.03233 -11.60537 -11.23791 -11.04712 -10.87485 -10.59692 -10.54245 -9.82714 -9.70542 -8.95868 -8.15804 -6.32759 0.27952 0.51077 1.44660 1.45802 1.57259 1.81642 2.21028 2.42747 2.72042 3.13897 3.27069 3.48542 3.92541 3.98957 4.13977 4.30330 4.42991 4.50148 4.51879 4.58033 4.59419 4.61329 4.68140 4.77148 4.80566 4.90643 5.05364 5.12177 5.23802 5.32641 5.41425 5.45238 5.54413 5.60694 5.63915 5.68415 5.77891 5.88464 6.12510 6.17640 6.26784 6.30305 6.75622 7.26801 7.35819 7.73283 8.89860 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037771 B = 0.002810 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.136533 B = 9962.189628 C =10069.210234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.296 3.704 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.715 5.715 14 C 0.692 3.308 15 O -0.612 6.612 16 N -0.680 5.680 17 C 0.163 3.837 18 C -0.149 4.149 19 C -0.077 4.077 20 C -0.124 4.124 21 C 0.108 3.892 22 O -0.413 6.413 23 C 0.024 3.976 24 C -0.089 4.089 25 C -0.149 4.149 26 H 0.024 0.976 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.265 0.735 32 H 0.402 0.598 33 H 0.420 0.580 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.129 0.871 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 8.624 -15.663 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.192 3.808 4 H 0.017 0.983 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.185 1.185 11 H -0.211 1.211 12 H -0.205 1.205 13 N -0.367 5.367 14 C 0.392 3.608 15 O -0.492 6.492 16 N -0.329 5.329 17 C 0.067 3.933 18 C -0.169 4.169 19 C -0.096 4.096 20 C -0.125 4.125 21 C 0.032 3.968 22 O -0.333 6.333 23 C -0.072 4.072 24 C -0.108 4.108 25 C -0.170 4.170 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.237 0.763 33 H 0.258 0.742 34 H 0.171 0.829 35 H 0.173 0.827 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.147 0.853 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.694 8.532 -14.626 22.419 hybrid contribution 1.324 -0.186 0.268 1.364 sum -13.369 8.346 -14.359 21.321 Atomic orbital electron populations 1.21628 0.97089 0.98848 1.00095 1.21797 0.93611 0.99258 1.01301 1.18281 0.93478 0.88830 0.80197 0.98283 1.21589 0.91294 1.38831 1.06691 0.90975 1.25759 1.03273 0.94426 0.95039 1.70060 1.36970 1.38363 1.09902 0.85314 0.79148 0.77795 0.78158 1.18465 1.21130 1.20460 1.45447 1.14208 1.58538 1.18547 1.16200 0.82998 0.78635 0.82934 1.90876 1.52688 1.65984 1.39624 1.42540 1.12938 1.60000 1.17415 1.17832 0.84884 0.95368 0.95199 1.21124 0.95898 1.03726 0.96191 1.21121 0.93484 0.96038 0.98920 1.19788 0.97131 1.01953 0.93625 1.21344 0.92688 0.82091 1.00666 1.87941 1.30710 1.23979 1.90686 1.22936 0.84615 0.98858 1.00762 1.21047 0.93892 0.97945 0.97915 1.21277 0.96778 0.99781 0.99157 0.95638 0.94131 0.93816 0.94030 0.90906 0.92594 0.76348 0.74188 0.82866 0.82724 0.90400 0.91881 0.93301 0.88832 0.92608 0.85349 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.52 71.98 0.61 -4.88 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.79 16 3 C 0.30 15.10 2.24 44.25 0.10 15.20 16 4 H 0.00 -0.04 7.57 -2.39 -0.02 -0.06 16 5 C -0.55 -28.57 8.73 25.60 0.22 -28.35 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.81 5.29 84.65 0.45 1.26 16 8 N -0.91 -52.12 11.29 21.45 0.24 -51.88 16 9 Si 0.97 41.86 29.54 68.60 2.03 43.88 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 13 N -0.71 -29.27 5.02 -461.41 -2.32 -31.59 16 14 C 0.69 27.86 6.99 179.06 1.25 29.11 16 15 O -0.61 -29.54 10.92 -4.00 -0.04 -29.59 16 16 N -0.68 -20.56 5.34 -317.18 -1.69 -22.25 16 17 C 0.16 4.88 6.30 38.15 0.24 5.12 16 18 C -0.15 -3.36 9.97 22.39 0.22 -3.14 16 19 C -0.08 -1.59 9.69 22.25 0.22 -1.37 16 20 C -0.12 -2.88 5.51 -19.84 -0.11 -2.99 16 21 C 0.11 1.93 6.06 71.24 0.43 2.37 16 22 O -0.41 -8.39 10.69 -148.98 -1.59 -9.98 16 23 C 0.02 0.30 11.01 113.37 1.25 1.55 16 24 C -0.09 -2.50 9.69 22.25 0.22 -2.29 16 25 C -0.15 -5.02 8.70 22.39 0.19 -4.83 16 26 H 0.02 1.26 7.85 -2.39 -0.02 1.24 16 27 H 0.04 1.83 5.66 -2.39 -0.01 1.81 16 28 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 4.02 5.95 -2.39 -0.01 4.01 16 31 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 32 H 0.40 13.66 8.56 -92.71 -0.79 12.87 16 33 H 0.42 9.33 8.84 -92.71 -0.82 8.51 16 34 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 37 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 38 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 42 H 0.11 4.46 6.22 -2.91 -0.02 4.45 16 Total: -1.00 -69.28 346.01 1.51 -67.77 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.57 Total: 32.66 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 5.46 Total: 0.98 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -3.77 Total: -105.72 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -1.64 Total: -39.57 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -69.28 1.51 -67.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192598984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.700 kcal (2) G-P(sol) polarization free energy of solvation -69.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds