Wall clock time and date at job start Tue Mar 31 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47260 * 2 1 4 4 C 1.53001 * 109.47260 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47271 * 179.97438 * 4 3 2 6 6 C 1.35972 * 116.99956 * 179.97438 * 5 4 3 7 7 C 1.38725 * 119.98806 * 0.28211 * 6 5 4 8 8 C 1.38092 * 120.01298 * 180.23117 * 7 6 5 9 9 C 1.38828 * 119.98811 * 359.46460 * 8 7 6 10 10 N 1.40153 * 120.01426 * 180.30050 * 9 8 7 11 11 C 1.34773 * 120.00000 * 144.90985 * 10 9 8 12 12 O 1.21593 * 120.00444 * 4.61720 * 11 10 9 13 13 N 1.34777 * 120.00223 * 184.61492 * 11 10 9 14 14 C 1.46498 * 120.00381 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47408 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99922 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00061 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00328 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00090 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46703 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47127 * 119.99681 * 19 17 15 22 22 H 1.48494 * 109.47155 * 240.00057 * 19 17 15 23 23 C 1.38838 * 119.97106 * 0.28152 * 9 8 7 24 24 C 1.38093 * 119.98612 * 359.97438 * 23 9 8 25 25 H 1.09006 * 109.46570 * 300.00073 * 1 2 3 26 26 H 1.09004 * 109.47352 * 59.99645 * 1 2 3 27 27 H 1.08999 * 109.47577 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47165 * 239.99936 * 2 1 3 29 29 H 1.08998 * 109.47126 * 119.99972 * 2 1 3 30 30 H 1.08997 * 109.47084 * 59.99887 * 3 2 1 31 31 H 1.08998 * 109.47028 * 300.00031 * 3 2 1 32 32 H 1.09006 * 109.46570 * 59.99927 * 4 3 2 33 33 H 1.08998 * 109.47126 * 299.99972 * 4 3 2 34 34 H 1.08004 * 119.98858 * 359.97438 * 7 6 5 35 35 H 1.08004 * 120.00474 * 179.74372 * 8 7 6 36 36 H 0.97002 * 119.99856 * 324.90653 * 10 9 8 37 37 H 0.97001 * 120.00100 * 0.02562 * 13 11 10 38 38 H 1.09000 * 109.46970 * 300.00369 * 14 13 11 39 39 H 1.09005 * 109.47108 * 60.00117 * 14 13 11 40 40 H 0.96993 * 120.00545 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.00767 * 180.02562 * 23 9 8 42 42 H 1.07994 * 119.99311 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0464 2.7897 -0.0012 6 6 5.3944 2.9678 -0.0013 7 6 6.2392 1.8675 -0.0068 8 6 7.6083 2.0478 -0.0020 9 6 8.1393 3.3305 -0.0031 10 7 9.5287 3.5141 -0.0046 11 6 10.0710 4.5489 -0.6765 12 8 9.3516 5.3706 -1.2111 13 7 11.4107 4.6730 -0.7560 14 6 12.0001 5.7975 -1.4868 15 6 13.5030 5.7042 -1.4254 16 1 13.9722 4.8890 -0.8946 17 6 14.2790 6.6601 -2.0459 18 7 13.7078 7.6531 -2.6918 19 14 16.1419 6.5448 -1.9691 20 1 16.5316 5.3438 -1.1875 21 1 16.6884 6.4388 -3.3458 22 1 16.6864 7.7603 -1.3125 23 6 7.2933 4.4313 -0.0029 24 6 5.9244 4.2498 -0.0023 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9329 0.9287 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 5.8260 0.8696 -0.0105 35 1 8.2659 1.1910 -0.0021 36 1 10.1001 2.8963 0.4780 37 1 11.9846 4.0173 -0.3298 38 1 11.6766 5.7643 -2.5272 39 1 11.6752 6.7348 -1.0350 40 1 14.2536 8.3254 -3.1286 41 1 7.7058 5.4295 -0.0042 42 1 5.2662 5.1060 -0.0027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000242989016.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:56 Heat of formation + Delta-G solvation = -59.177107 kcal Electronic energy + Delta-G solvation = -21834.163283 eV Core-core repulsion = 18393.015300 eV Total energy + Delta-G solvation = -3441.147983 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.41456 -39.44357 -37.46985 -35.50590 -34.28073 -33.88880 -32.31769 -31.03486 -29.93572 -28.44601 -26.80426 -24.51816 -23.01869 -22.65637 -21.60082 -21.39712 -20.15521 -18.29618 -18.05717 -17.28031 -16.60912 -16.10876 -15.74013 -15.05296 -14.92979 -14.83762 -14.43145 -14.16889 -13.96440 -13.62500 -13.34227 -13.20676 -13.02439 -12.58873 -12.49723 -12.27094 -12.01019 -11.87958 -11.55692 -11.50635 -11.28840 -10.97561 -10.95332 -10.90196 -10.77740 -10.32345 -9.68859 -9.41553 -9.38991 -8.86973 -8.76872 -7.99801 -7.46579 -6.17937 -4.24906 1.41923 1.50867 3.04698 3.21907 3.22906 3.30822 3.34212 3.65275 4.02914 4.30783 4.46528 4.50091 4.64181 4.81898 4.84654 4.89819 4.94518 5.02768 5.13795 5.18423 5.33557 5.36657 5.37485 5.44999 5.52260 5.68165 5.75202 5.78580 5.86299 6.06238 6.08001 6.34340 6.48569 6.68760 7.05425 7.10354 7.40472 7.45403 7.50275 7.51899 7.82850 7.98331 8.69036 8.83825 9.20638 9.42575 10.92258 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.062124 B = 0.002070 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.599934 B =13521.955100 C =13761.132767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.059 3.941 5 O -0.318 6.318 6 C 0.102 3.898 7 C -0.190 4.190 8 C -0.116 4.116 9 C 0.144 3.856 10 N -0.695 5.695 11 C 0.690 3.310 12 O -0.584 6.584 13 N -0.723 5.723 14 C 0.265 3.735 15 C -0.543 4.543 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.081 4.081 24 C -0.131 4.131 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.402 0.598 37 H 0.388 0.612 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.266 0.734 41 H 0.151 0.849 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.278 -16.328 7.942 27.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.016 4.016 5 O -0.233 6.233 6 C 0.057 3.943 7 C -0.210 4.210 8 C -0.137 4.137 9 C 0.048 3.952 10 N -0.344 5.344 11 C 0.391 3.609 12 O -0.462 6.462 13 N -0.374 5.374 14 C 0.144 3.856 15 C -0.582 4.582 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.101 4.101 24 C -0.151 4.151 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.237 0.763 37 H 0.221 0.779 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.168 0.832 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.926 -15.189 7.281 26.863 hybrid contribution 1.754 -0.880 0.339 1.992 sum -19.171 -16.069 7.620 26.150 Atomic orbital electron populations 1.21752 0.95230 1.01822 1.02126 1.21435 0.96396 0.95721 1.02395 1.21578 0.92767 0.97632 1.03774 1.22780 0.95165 0.82404 1.01245 1.86044 1.19309 1.28652 1.89262 1.18917 0.81934 0.94153 0.99313 1.20903 0.93456 0.97801 1.08814 1.20634 0.94696 0.95497 1.02896 1.17473 0.82612 0.93228 1.01885 1.42762 1.05134 1.31516 1.54987 1.16166 0.83597 0.81514 0.79651 1.90870 1.60242 1.43081 1.52025 1.45766 1.03025 1.31285 1.57332 1.19058 0.92132 0.82851 0.91534 1.21246 0.90448 1.11052 1.35422 0.91836 1.24944 0.99367 0.94902 0.94788 1.69983 1.35791 1.12786 1.33606 0.86344 0.84468 0.78083 0.77893 1.19669 1.20794 1.20790 1.21291 0.91454 1.00102 0.97283 1.20353 0.94774 0.94697 1.05249 0.92553 0.92515 0.92523 0.91670 0.91709 0.90839 0.90799 0.92210 0.92243 0.85614 0.85684 0.76347 0.77942 0.95500 0.95472 0.92459 0.83160 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.65 5.93 -26.73 -0.16 -0.81 16 3 C -0.12 -0.83 5.58 -26.73 -0.15 -0.98 16 4 C 0.06 0.50 4.74 37.16 0.18 0.68 16 5 O -0.32 -3.85 10.14 -19.65 -0.20 -4.05 16 6 C 0.10 1.35 6.69 -39.22 -0.26 1.09 16 7 C -0.19 -2.25 9.03 -39.46 -0.36 -2.60 16 8 C -0.12 -1.45 9.96 -39.42 -0.39 -1.84 16 9 C 0.14 2.20 6.30 -83.61 -0.53 1.67 16 10 N -0.70 -10.76 5.35 -14.19 -0.08 -10.83 16 11 C 0.69 14.12 8.41 -86.92 -0.73 13.39 16 12 O -0.58 -14.21 13.78 5.28 0.07 -14.14 16 13 N -0.72 -15.15 5.55 -66.41 -0.37 -15.52 16 14 C 0.27 7.00 5.43 -5.19 -0.03 6.97 16 15 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.88 -25.94 13.29 55.43 0.74 -25.21 16 19 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.08 -1.32 8.69 -39.41 -0.34 -1.66 16 24 C -0.13 -1.89 9.98 -39.46 -0.39 -2.29 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 33 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 34 H 0.13 1.15 6.29 -52.48 -0.33 0.82 16 35 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 36 H 0.40 4.72 8.84 -40.82 -0.36 4.36 16 37 H 0.39 6.86 8.34 -40.82 -0.34 6.52 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.15 2.77 6.22 -52.49 -0.33 2.44 16 42 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 354.66 15.07 5.34 5.34 Total: -1.00 -32.60 354.66 -9.06 -41.67 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.34 Total: 7.07 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -3.21 Total: -0.04 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.29 Total: -51.56 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.13 Total: -18.19 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.60 -9.06 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000242989016.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.511 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds