Wall clock time and date at job start Tue Mar 31 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47260 * 2 1 4 4 C 1.53001 * 109.47260 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47271 * 179.97438 * 4 3 2 6 6 C 1.35972 * 116.99956 * 179.97438 * 5 4 3 7 7 C 1.38725 * 119.98806 * 0.28211 * 6 5 4 8 8 C 1.38092 * 120.01298 * 180.23117 * 7 6 5 9 9 C 1.38828 * 119.98811 * 359.46460 * 8 7 6 10 10 N 1.40153 * 120.01426 * 180.30050 * 9 8 7 11 11 C 1.34773 * 120.00000 * 144.90985 * 10 9 8 12 12 O 1.21593 * 120.00444 * 4.61720 * 11 10 9 13 13 N 1.34777 * 120.00223 * 184.61492 * 11 10 9 14 14 C 1.46498 * 120.00381 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47408 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99922 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00061 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00328 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00090 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46703 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47127 * 119.99681 * 19 17 15 22 22 H 1.48494 * 109.47155 * 240.00057 * 19 17 15 23 23 C 1.38838 * 119.97106 * 0.28152 * 9 8 7 24 24 C 1.38093 * 119.98612 * 359.97438 * 23 9 8 25 25 H 1.09006 * 109.46570 * 300.00073 * 1 2 3 26 26 H 1.09004 * 109.47352 * 59.99645 * 1 2 3 27 27 H 1.08999 * 109.47577 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47165 * 239.99936 * 2 1 3 29 29 H 1.08998 * 109.47126 * 119.99972 * 2 1 3 30 30 H 1.08997 * 109.47084 * 59.99887 * 3 2 1 31 31 H 1.08998 * 109.47028 * 300.00031 * 3 2 1 32 32 H 1.09006 * 109.46570 * 59.99927 * 4 3 2 33 33 H 1.08998 * 109.47126 * 299.99972 * 4 3 2 34 34 H 1.08004 * 119.98858 * 359.97438 * 7 6 5 35 35 H 1.08004 * 120.00474 * 179.74372 * 8 7 6 36 36 H 0.97002 * 119.99856 * 324.90653 * 10 9 8 37 37 H 0.97001 * 120.00100 * 0.02562 * 13 11 10 38 38 H 1.09000 * 109.46970 * 300.00369 * 14 13 11 39 39 H 1.09005 * 109.47108 * 60.00117 * 14 13 11 40 40 H 0.96993 * 120.00545 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.00767 * 180.02562 * 23 9 8 42 42 H 1.07994 * 119.99311 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0464 2.7897 -0.0012 6 6 5.3944 2.9678 -0.0013 7 6 6.2392 1.8675 -0.0068 8 6 7.6083 2.0478 -0.0020 9 6 8.1393 3.3305 -0.0031 10 7 9.5287 3.5141 -0.0046 11 6 10.0710 4.5489 -0.6765 12 8 9.3516 5.3706 -1.2111 13 7 11.4107 4.6730 -0.7560 14 6 12.0001 5.7975 -1.4868 15 6 13.5030 5.7042 -1.4254 16 1 13.9722 4.8890 -0.8946 17 6 14.2790 6.6601 -2.0459 18 7 13.7078 7.6531 -2.6918 19 14 16.1419 6.5448 -1.9691 20 1 16.5316 5.3438 -1.1875 21 1 16.6884 6.4388 -3.3458 22 1 16.6864 7.7603 -1.3125 23 6 7.2933 4.4313 -0.0029 24 6 5.9244 4.2498 -0.0023 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9329 0.9287 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 5.8260 0.8696 -0.0105 35 1 8.2659 1.1910 -0.0021 36 1 10.1001 2.8963 0.4780 37 1 11.9846 4.0173 -0.3298 38 1 11.6766 5.7643 -2.5272 39 1 11.6752 6.7348 -1.0350 40 1 14.2536 8.3254 -3.1286 41 1 7.7058 5.4295 -0.0042 42 1 5.2662 5.1060 -0.0027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000242989016.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:56 Heat of formation + Delta-G solvation = -80.774100 kcal Electronic energy + Delta-G solvation = -21835.099799 eV Core-core repulsion = 18393.015300 eV Total energy + Delta-G solvation = -3442.084499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.67192 -40.69022 -38.61831 -36.29612 -36.01036 -35.24144 -34.27853 -32.07057 -30.73258 -29.76671 -28.48788 -25.35737 -24.78044 -23.59722 -22.94213 -22.00592 -21.64468 -19.84612 -19.13691 -18.57618 -17.97295 -17.27742 -16.91343 -16.72313 -16.41063 -15.87966 -15.62403 -15.45104 -14.96332 -14.79820 -14.48179 -14.29327 -14.09411 -13.99632 -13.83469 -13.60345 -13.19845 -12.97643 -12.86270 -12.74846 -12.24288 -12.18810 -11.99462 -11.95728 -11.71738 -11.47125 -11.44669 -11.21030 -10.82100 -10.81070 -9.97683 -9.87770 -8.64921 -8.28391 -6.44879 0.35610 0.38119 1.44301 1.45827 1.58702 1.74859 2.11728 2.25546 2.39625 2.83337 3.07019 3.42957 3.82396 3.92342 3.95703 4.03294 4.16871 4.26991 4.38113 4.40076 4.46534 4.63802 4.65646 4.86168 4.88449 4.94573 5.01923 5.07887 5.08959 5.24149 5.25920 5.32657 5.34247 5.36836 5.44827 5.45709 5.53060 5.66757 5.83442 5.91033 6.20982 6.50119 6.66597 7.19589 7.26211 7.62109 8.84048 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.062124 B = 0.002070 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.599934 B =13521.955100 C =13761.132767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.117 4.117 4 C 0.050 3.950 5 O -0.332 6.332 6 C 0.105 3.895 7 C -0.182 4.182 8 C -0.098 4.098 9 C 0.114 3.886 10 N -0.671 5.671 11 C 0.690 3.310 12 O -0.629 6.629 13 N -0.715 5.715 14 C 0.284 3.716 15 C -0.554 4.554 16 H 0.086 0.914 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.987 3.013 20 H -0.252 1.252 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.103 4.103 24 C -0.147 4.147 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.423 0.577 37 H 0.407 0.593 38 H -0.012 1.012 39 H -0.011 1.011 40 H 0.269 0.731 41 H 0.117 0.883 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.881 -19.888 8.979 29.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.155 4.155 4 C -0.024 4.024 5 O -0.247 6.247 6 C 0.060 3.940 7 C -0.201 4.201 8 C -0.119 4.119 9 C 0.020 3.980 10 N -0.321 5.321 11 C 0.390 3.610 12 O -0.510 6.510 13 N -0.369 5.369 14 C 0.161 3.839 15 C -0.592 4.592 16 H 0.104 0.896 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.810 3.190 20 H -0.176 1.176 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.124 4.124 24 C -0.166 4.166 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.180 0.820 35 H 0.178 0.822 36 H 0.261 0.739 37 H 0.243 0.757 38 H 0.006 0.994 39 H 0.007 0.993 40 H 0.077 0.923 41 H 0.134 0.866 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.555 -18.836 8.373 29.110 hybrid contribution 1.403 0.169 0.038 1.414 sum -19.152 -18.667 8.412 28.036 Atomic orbital electron populations 1.21768 0.95054 1.02293 1.01985 1.21421 0.96521 0.94517 1.03077 1.21583 0.91868 0.98751 1.03278 1.23105 0.95966 0.80810 1.02520 1.86046 1.18541 1.31188 1.88910 1.18995 0.82874 0.93970 0.98188 1.21301 0.92947 0.98941 1.06906 1.20958 0.95503 0.94978 1.00445 1.17699 0.81929 0.94290 1.04102 1.42350 1.05736 1.30177 1.53872 1.16292 0.83009 0.82100 0.79591 1.90853 1.61167 1.45080 1.53914 1.45301 1.03671 1.30565 1.57336 1.18476 0.92762 0.83162 0.89549 1.21630 0.90408 1.11723 1.35472 0.89646 1.26061 1.05241 0.94246 0.94039 1.70146 1.38156 1.13890 1.34719 0.85081 0.77150 0.78705 0.78071 1.17576 1.20527 1.20541 1.21092 0.92678 0.99230 0.99368 1.20367 0.94124 0.96002 1.06105 0.92623 0.92807 0.91746 0.91126 0.90848 0.91200 0.91544 0.91099 0.90572 0.81981 0.82152 0.73869 0.75696 0.99421 0.99331 0.92251 0.86552 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.51 16 2 C -0.12 -0.96 5.93 30.59 0.18 -0.78 16 3 C -0.12 -1.40 5.58 30.59 0.17 -1.23 16 4 C 0.05 0.71 4.74 71.98 0.34 1.05 16 5 O -0.33 -7.50 10.14 -93.24 -0.95 -8.44 16 6 C 0.11 2.63 6.69 22.50 0.15 2.78 16 7 C -0.18 -3.67 9.03 22.35 0.20 -3.47 16 8 C -0.10 -2.14 9.96 22.38 0.22 -1.92 16 9 C 0.11 3.42 6.30 38.10 0.24 3.66 16 10 N -0.67 -20.32 5.35 -317.06 -1.70 -22.02 16 11 C 0.69 28.99 8.41 179.06 1.51 30.49 16 12 O -0.63 -32.50 13.78 -4.01 -0.06 -32.55 16 13 N -0.72 -30.51 5.55 -482.29 -2.68 -33.19 16 14 C 0.28 15.66 5.43 85.63 0.46 16.12 16 15 C -0.55 -30.01 9.28 25.60 0.24 -29.77 16 16 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 19 Si 0.99 42.13 29.54 68.60 2.03 44.16 16 20 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 21 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 C -0.10 -3.51 8.69 22.38 0.19 -3.32 16 24 C -0.15 -4.34 9.98 22.35 0.22 -4.11 16 25 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 26 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.86 7.65 -2.38 -0.02 0.85 16 33 H 0.08 0.84 7.67 -2.39 -0.02 0.83 16 34 H 0.16 2.10 6.29 -2.91 -0.02 2.08 16 35 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.42 9.01 8.84 -92.71 -0.82 8.19 16 37 H 0.41 14.00 8.34 -92.71 -0.77 13.23 16 38 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 39 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 40 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.12 4.72 6.22 -2.91 -0.02 4.70 16 42 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -74.47 354.66 1.69 -72.78 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -0.56 Total: 25.47 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 5.31 Total: 9.68 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -4.09 Total: -111.09 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.00 Total: -40.99 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -74.47 1.69 -72.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000242989016.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.992 kcal (2) G-P(sol) polarization free energy of solvation -74.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds