Wall clock time and date at job start Tue Mar 31 2020 07:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47637 * 2 1 4 4 H 1.09002 * 109.46432 * 55.60834 * 3 2 1 5 5 O 1.42905 * 109.47092 * 295.61613 * 3 2 1 6 6 C 1.42890 * 113.99919 * 149.99630 * 5 3 2 7 7 C 1.50690 * 109.47357 * 175.60834 * 3 2 1 8 8 O 1.21285 * 119.99962 * 105.19219 * 7 3 2 9 9 N 1.34772 * 120.00447 * 285.18590 * 7 3 2 10 10 C 1.46500 * 119.99880 * 5.18792 * 9 7 3 11 11 C 1.50700 * 109.46824 * 267.03663 * 10 9 7 12 12 H 1.07998 * 120.00312 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99755 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00293 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99996 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47335 * 89.99625 * 15 13 11 17 17 H 1.48503 * 109.47165 * 210.00076 * 15 13 11 18 18 H 1.48501 * 109.46833 * 329.99638 * 15 13 11 19 19 C 1.46505 * 120.00407 * 185.17981 * 9 7 3 20 20 C 1.50695 * 109.47439 * 270.00575 * 19 9 7 21 21 C 1.38224 * 119.61942 * 94.97548 * 20 19 9 22 22 C 1.38628 * 119.16274 * 179.79218 * 21 20 19 23 23 C 1.38681 * 118.41684 * 0.47298 * 22 21 20 24 24 C 1.38180 * 119.16259 * 359.50709 * 23 22 21 25 25 N 1.31857 * 119.61755 * 274.99682 * 20 19 9 26 26 H 1.08993 * 109.46991 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46600 * 300.00270 * 1 2 3 28 28 H 1.09002 * 109.46736 * 59.99481 * 1 2 3 29 29 H 1.08999 * 109.47132 * 240.00258 * 2 1 3 30 30 H 1.08998 * 109.47392 * 120.00218 * 2 1 3 31 31 H 1.08996 * 109.47319 * 59.99764 * 6 5 3 32 32 H 1.09003 * 109.46847 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47612 * 299.99549 * 6 5 3 34 34 H 1.09001 * 109.47231 * 27.03351 * 10 9 7 35 35 H 1.08997 * 109.47540 * 147.03544 * 10 9 7 36 36 H 0.97007 * 120.00058 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.46769 * 149.99838 * 19 9 7 38 38 H 1.08997 * 109.46592 * 30.00548 * 19 9 7 39 39 H 1.08000 * 120.42156 * 359.97438 * 21 20 19 40 40 H 1.08002 * 120.79256 * 180.23379 * 22 21 20 41 41 H 1.08001 * 120.41644 * 179.78420 * 23 22 21 42 42 H 1.07998 * 119.61712 * 180.25726 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6139 1.9785 0.8481 5 8 1.6498 2.0858 -1.2149 6 6 1.4450 3.4942 -1.0870 7 6 3.5431 1.4438 0.1088 8 8 4.2214 1.6936 -0.8651 9 7 4.1337 1.1675 1.2883 10 6 3.3212 0.7551 2.4354 11 6 2.9626 1.9657 3.2582 12 1 3.3059 2.9443 2.9570 13 6 2.1962 1.8239 4.3955 14 7 1.7776 0.6323 4.7621 15 14 1.7510 3.3246 5.4150 16 1 0.4711 3.8950 4.9235 17 1 1.6026 2.9295 6.8388 18 1 2.8257 4.3422 5.2931 19 6 5.5882 1.2795 1.4233 20 6 6.2277 -0.0413 1.0807 21 6 6.6922 -0.2630 -0.2022 22 6 7.2828 -1.4799 -0.5059 23 6 7.3755 -2.4363 0.4941 24 6 6.8890 -2.1429 1.7537 25 7 6.3372 -0.9723 2.0080 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.3693 3.9671 -0.7552 32 1 1.1517 3.9078 -2.0519 33 1 0.6582 3.6822 -0.3564 34 1 2.4097 0.2738 2.0809 35 1 3.8874 0.0539 3.0485 36 1 1.2387 0.5325 5.5624 37 1 5.8381 1.5489 2.4495 38 1 5.9578 2.0488 0.7454 39 1 6.5989 0.5031 -0.9576 40 1 7.6582 -1.6798 -1.4986 41 1 7.8264 -3.3967 0.2921 42 1 6.9612 -2.8808 2.5390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264030580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:23 Heat of formation + Delta-G solvation = -46.152309 kcal Electronic energy + Delta-G solvation = -24388.156305 eV Core-core repulsion = 20947.573119 eV Total energy + Delta-G solvation = -3440.583186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.10733 -39.29601 -36.98702 -35.12166 -33.25995 -32.72690 -32.14836 -31.30717 -27.91473 -27.40836 -26.28716 -24.96281 -23.31958 -22.93701 -21.94901 -21.16203 -18.75226 -16.89550 -16.87251 -16.36876 -16.20622 -15.71494 -15.30069 -15.09495 -14.87972 -14.55600 -14.09208 -13.84807 -13.48609 -13.27281 -13.02735 -12.86093 -12.64779 -12.35329 -11.97486 -11.66270 -11.61669 -11.46736 -11.28937 -11.11759 -10.95050 -10.88367 -10.45860 -10.25081 -10.15792 -9.95102 -9.74800 -9.62345 -9.14873 -8.90348 -8.61407 -8.41480 -7.77316 -6.17607 -4.24935 1.32357 1.53778 3.21402 3.27326 3.29861 3.33870 3.66479 4.12706 4.30324 4.42886 4.61742 4.99594 5.05698 5.14268 5.23916 5.28968 5.40700 5.42016 5.53660 5.68450 5.75839 5.77459 5.80896 5.91030 5.97319 6.03006 6.06774 6.20597 6.23109 6.33477 6.38320 6.42905 6.47677 6.62629 6.81525 6.94610 7.24795 7.42677 7.58270 7.76193 8.05753 8.27097 8.36246 8.77716 8.96852 9.42049 10.88962 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011253 B = 0.006687 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.658395 B = 4186.524253 C = 5575.605507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.102 0.898 5 O -0.365 6.365 6 C 0.033 3.967 7 C 0.494 3.506 8 O -0.559 6.559 9 N -0.585 5.585 10 C 0.224 3.776 11 C -0.541 4.541 12 H 0.060 0.940 13 C 0.068 3.932 14 N -0.887 5.887 15 Si 0.894 3.106 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.168 3.832 20 C 0.120 3.880 21 C -0.150 4.150 22 C -0.084 4.084 23 C -0.182 4.182 24 C 0.094 3.906 25 N -0.464 5.464 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.265 0.735 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.278 -2.755 -7.918 9.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C 0.017 3.983 4 H 0.120 0.880 5 O -0.282 6.282 6 C -0.064 4.064 7 C 0.282 3.718 8 O -0.439 6.439 9 N -0.316 5.316 10 C 0.105 3.895 11 C -0.579 4.579 12 H 0.078 0.922 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.721 3.279 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C 0.044 3.956 20 C -0.019 4.019 21 C -0.170 4.170 22 C -0.110 4.110 23 C -0.202 4.202 24 C -0.064 4.064 25 N -0.173 5.173 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.157 -2.634 -7.594 9.049 hybrid contribution 0.126 0.660 0.154 0.689 sum 4.283 -1.974 -7.440 8.809 Atomic orbital electron populations 1.21666 0.94825 1.01447 1.02183 1.21694 0.97117 0.93511 1.03296 1.22099 0.91147 0.96249 0.88804 0.88033 1.87882 1.87977 1.20315 1.32043 1.22757 0.99826 0.82082 1.01754 1.21272 0.91236 0.76648 0.82639 1.90565 1.65709 1.50605 1.37040 1.48250 1.05648 1.65510 1.12235 1.19798 0.90892 0.96255 0.82540 1.21470 1.33371 0.93875 1.09230 0.92196 1.24913 0.95570 0.96012 0.97093 1.69923 1.35632 1.21769 1.25119 0.86564 0.78874 0.82889 0.79553 1.20538 1.21030 1.19813 1.20138 0.81189 0.90977 1.03328 1.21868 0.94158 0.96285 0.89572 1.22132 0.98644 0.98387 0.97883 1.21546 0.96870 0.93306 0.99287 1.22084 1.02797 1.00369 0.94920 1.22756 0.93989 0.94000 0.95627 1.67595 1.12691 1.01236 1.35774 0.92823 0.92197 0.92465 0.91691 0.88782 0.94088 0.90039 0.93976 0.93376 0.93453 0.92517 0.88437 0.89599 0.84436 0.85322 0.85335 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.81 37.16 0.36 -1.88 16 2 C -0.12 -2.13 5.29 -26.73 -0.14 -2.27 16 3 C 0.08 1.52 1.71 -27.88 -0.05 1.47 16 4 H 0.10 2.09 6.92 -51.93 -0.36 1.73 16 5 O -0.36 -6.85 9.44 -54.69 -0.52 -7.36 16 6 C 0.03 0.51 10.81 101.05 1.09 1.60 16 7 C 0.49 10.51 6.94 -10.99 -0.08 10.43 16 8 O -0.56 -12.61 15.95 -13.91 -0.22 -12.84 16 9 N -0.58 -12.44 2.44 -176.44 -0.43 -12.87 16 10 C 0.22 5.31 4.72 -5.19 -0.02 5.28 16 11 C -0.54 -13.79 8.94 -34.44 -0.31 -14.10 16 12 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 13 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -24.05 13.29 55.43 0.74 -23.31 16 15 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 19 C 0.17 3.24 5.69 -5.19 -0.03 3.21 16 20 C 0.12 2.18 6.36 -82.59 -0.53 1.66 16 21 C -0.15 -2.42 9.72 -39.44 -0.38 -2.80 16 22 C -0.08 -1.13 10.18 -39.27 -0.40 -1.53 16 23 C -0.18 -2.30 10.11 -39.44 -0.40 -2.70 16 24 C 0.09 1.39 11.18 -17.55 -0.20 1.19 16 25 N -0.46 -8.50 10.27 -9.48 -0.10 -8.60 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.85 7.80 -51.93 -0.41 0.44 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.81 5.50 -51.93 -0.29 1.53 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.04 0.60 8.09 -51.93 -0.42 0.19 16 34 H 0.05 1.16 4.15 -51.93 -0.22 0.94 16 35 H 0.05 1.23 8.09 -51.93 -0.42 0.81 16 36 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.10 1.91 8.07 -51.93 -0.42 1.49 16 38 H 0.09 1.56 7.40 -51.93 -0.38 1.18 16 39 H 0.14 2.22 7.81 -52.49 -0.41 1.81 16 40 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 41 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -29.90 354.00 -7.63 -37.53 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.25 Total: 5.69 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.17 Total: 1.23 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.21 Total: -44.78 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.74 Total: -20.20 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.90 -7.63 -37.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264030580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.620 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds