Wall clock time and date at job start Tue Mar 31 2020 07:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47637 * 2 1 4 4 H 1.09002 * 109.46432 * 55.60834 * 3 2 1 5 5 O 1.42905 * 109.47092 * 295.61613 * 3 2 1 6 6 C 1.42890 * 113.99919 * 149.99630 * 5 3 2 7 7 C 1.50690 * 109.47357 * 175.60834 * 3 2 1 8 8 O 1.21285 * 119.99962 * 105.19219 * 7 3 2 9 9 N 1.34772 * 120.00447 * 285.18590 * 7 3 2 10 10 C 1.46500 * 119.99880 * 5.18792 * 9 7 3 11 11 C 1.50700 * 109.46824 * 267.03663 * 10 9 7 12 12 H 1.07998 * 120.00312 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99755 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00293 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99996 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47335 * 89.99625 * 15 13 11 17 17 H 1.48503 * 109.47165 * 210.00076 * 15 13 11 18 18 H 1.48501 * 109.46833 * 329.99638 * 15 13 11 19 19 C 1.46505 * 120.00407 * 185.17981 * 9 7 3 20 20 C 1.50695 * 109.47439 * 270.00575 * 19 9 7 21 21 C 1.38224 * 119.61942 * 94.97548 * 20 19 9 22 22 C 1.38628 * 119.16274 * 179.79218 * 21 20 19 23 23 C 1.38681 * 118.41684 * 0.47298 * 22 21 20 24 24 C 1.38180 * 119.16259 * 359.50709 * 23 22 21 25 25 N 1.31857 * 119.61755 * 274.99682 * 20 19 9 26 26 H 1.08993 * 109.46991 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46600 * 300.00270 * 1 2 3 28 28 H 1.09002 * 109.46736 * 59.99481 * 1 2 3 29 29 H 1.08999 * 109.47132 * 240.00258 * 2 1 3 30 30 H 1.08998 * 109.47392 * 120.00218 * 2 1 3 31 31 H 1.08996 * 109.47319 * 59.99764 * 6 5 3 32 32 H 1.09003 * 109.46847 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47612 * 299.99549 * 6 5 3 34 34 H 1.09001 * 109.47231 * 27.03351 * 10 9 7 35 35 H 1.08997 * 109.47540 * 147.03544 * 10 9 7 36 36 H 0.97007 * 120.00058 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.46769 * 149.99838 * 19 9 7 38 38 H 1.08997 * 109.46592 * 30.00548 * 19 9 7 39 39 H 1.08000 * 120.42156 * 359.97438 * 21 20 19 40 40 H 1.08002 * 120.79256 * 180.23379 * 22 21 20 41 41 H 1.08001 * 120.41644 * 179.78420 * 23 22 21 42 42 H 1.07998 * 119.61712 * 180.25726 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6139 1.9785 0.8481 5 8 1.6498 2.0858 -1.2149 6 6 1.4450 3.4942 -1.0870 7 6 3.5431 1.4438 0.1088 8 8 4.2214 1.6936 -0.8651 9 7 4.1337 1.1675 1.2883 10 6 3.3212 0.7551 2.4354 11 6 2.9626 1.9657 3.2582 12 1 3.3059 2.9443 2.9570 13 6 2.1962 1.8239 4.3955 14 7 1.7776 0.6323 4.7621 15 14 1.7510 3.3246 5.4150 16 1 0.4711 3.8950 4.9235 17 1 1.6026 2.9295 6.8388 18 1 2.8257 4.3422 5.2931 19 6 5.5882 1.2795 1.4233 20 6 6.2277 -0.0413 1.0807 21 6 6.6922 -0.2630 -0.2022 22 6 7.2828 -1.4799 -0.5059 23 6 7.3755 -2.4363 0.4941 24 6 6.8890 -2.1429 1.7537 25 7 6.3372 -0.9723 2.0080 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.3693 3.9671 -0.7552 32 1 1.1517 3.9078 -2.0519 33 1 0.6582 3.6822 -0.3564 34 1 2.4097 0.2738 2.0809 35 1 3.8874 0.0539 3.0485 36 1 1.2387 0.5325 5.5624 37 1 5.8381 1.5489 2.4495 38 1 5.9578 2.0488 0.7454 39 1 6.5989 0.5031 -0.9576 40 1 7.6582 -1.6798 -1.4986 41 1 7.8264 -3.3967 0.2921 42 1 6.9612 -2.8808 2.5390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264030580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:22 Heat of formation + Delta-G solvation = -62.987094 kcal Electronic energy + Delta-G solvation = -24388.886316 eV Core-core repulsion = 20947.573119 eV Total energy + Delta-G solvation = -3441.313197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53054 -40.72209 -38.49359 -36.87168 -34.75446 -34.52710 -33.35584 -32.69278 -29.44346 -29.12128 -27.71282 -26.39464 -24.97555 -24.33692 -23.25323 -22.62630 -20.36827 -18.71688 -18.45241 -17.81542 -17.67736 -17.09389 -16.64788 -16.56375 -16.38000 -16.25044 -15.60289 -15.30022 -14.92757 -14.63529 -14.32669 -14.20770 -14.15876 -13.95379 -13.44580 -13.37032 -13.10387 -12.95372 -12.74609 -12.65295 -12.58923 -12.41838 -12.15721 -11.90125 -11.77873 -11.55104 -11.47899 -10.80871 -10.58019 -10.42664 -10.27383 -9.88997 -9.50966 -8.18161 -6.32593 0.13436 0.39663 1.41439 1.43727 1.52483 1.61642 2.12548 2.42095 2.80511 3.01505 3.11834 3.36396 3.63464 3.81773 3.96994 4.02820 4.05735 4.18316 4.26251 4.36152 4.44477 4.47671 4.51688 4.58161 4.61924 4.75683 4.76037 4.79211 4.87887 4.93130 5.04917 5.12954 5.23788 5.26490 5.28188 5.41374 5.61868 5.76456 5.82338 6.05048 6.06892 6.52566 6.79458 7.12305 7.23141 7.39278 8.87656 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011253 B = 0.006687 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.658395 B = 4186.524253 C = 5575.605507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.115 4.115 3 C 0.084 3.916 4 H 0.088 0.912 5 O -0.374 6.374 6 C 0.026 3.974 7 C 0.490 3.510 8 O -0.575 6.575 9 N -0.585 5.585 10 C 0.244 3.756 11 C -0.550 4.550 12 H 0.053 0.947 13 C 0.026 3.974 14 N -0.915 5.915 15 Si 0.954 3.046 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.273 1.273 19 C 0.168 3.832 20 C 0.095 3.905 21 C -0.161 4.161 22 C -0.079 4.079 23 C -0.163 4.163 24 C 0.080 3.920 25 N -0.504 5.504 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.027 0.973 32 H 0.112 0.888 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.019 0.981 36 H 0.268 0.732 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.165 0.835 41 H 0.173 0.827 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.324 -3.445 -8.961 10.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.152 4.152 3 C 0.023 3.977 4 H 0.106 0.894 5 O -0.291 6.291 6 C -0.070 4.070 7 C 0.279 3.721 8 O -0.456 6.456 9 N -0.317 5.317 10 C 0.123 3.877 11 C -0.588 4.588 12 H 0.071 0.929 13 C -0.175 4.175 14 N -0.553 5.553 15 Si 0.779 3.221 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.044 3.956 20 C -0.043 4.043 21 C -0.181 4.181 22 C -0.105 4.105 23 C -0.182 4.182 24 C -0.078 4.078 25 N -0.214 5.214 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.131 0.869 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.149 0.851 40 H 0.183 0.817 41 H 0.190 0.810 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.211 -3.312 -8.646 10.171 hybrid contribution 0.198 0.816 0.441 0.948 sum 4.409 -2.496 -8.205 9.643 Atomic orbital electron populations 1.21616 0.92779 1.02769 1.02163 1.21642 0.98849 0.92291 1.02454 1.22014 0.89795 0.97152 0.88778 0.89435 1.87862 1.87816 1.21955 1.31484 1.22984 0.99593 0.80441 1.03954 1.21628 0.92081 0.76168 0.82238 1.90540 1.66290 1.51451 1.37285 1.48205 1.06456 1.65334 1.11673 1.19398 0.90483 0.95076 0.82697 1.21642 1.33382 0.94013 1.09776 0.92882 1.25606 0.95411 0.98501 0.98007 1.70018 1.36211 1.23478 1.25631 0.85624 0.78787 0.79690 0.78011 1.19535 1.20756 1.19736 1.20141 0.80279 0.92658 1.02545 1.21577 0.96124 0.95884 0.90750 1.22136 0.99433 0.99767 0.96776 1.21979 0.95430 0.91965 1.01138 1.22524 1.00655 1.01669 0.93391 1.23291 0.93575 0.93263 0.97624 1.67497 1.14355 1.02744 1.36767 0.90876 0.93167 0.91411 0.91338 0.90615 0.95464 0.86944 0.92805 0.93622 0.96272 0.92327 0.89907 0.89235 0.85092 0.81746 0.80959 0.80758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.81 71.98 0.71 -3.40 16 2 C -0.11 -4.13 5.29 30.60 0.16 -3.97 16 3 C 0.08 3.31 1.71 29.85 0.05 3.36 16 4 H 0.09 3.69 6.92 -2.39 -0.02 3.67 16 5 O -0.37 -13.78 9.44 -130.37 -1.23 -15.01 16 6 C 0.03 0.80 10.81 113.37 1.23 2.02 16 7 C 0.49 21.37 6.94 87.65 0.61 21.98 16 8 O -0.57 -26.34 15.95 15.56 0.25 -26.09 16 9 N -0.59 -25.96 2.44 -830.53 -2.03 -27.99 16 10 C 0.24 12.03 4.72 85.63 0.40 12.43 16 11 C -0.55 -28.80 8.94 25.60 0.23 -28.57 16 12 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 13 C 0.03 1.35 5.46 84.66 0.46 1.81 16 14 N -0.91 -50.35 13.29 21.45 0.28 -50.07 16 15 Si 0.95 41.60 29.54 68.60 2.03 43.63 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 C 0.17 6.81 5.69 85.63 0.49 7.29 16 20 C 0.09 3.53 6.36 42.55 0.27 3.80 16 21 C -0.16 -5.14 9.72 22.36 0.22 -4.92 16 22 C -0.08 -1.92 10.18 22.47 0.23 -1.69 16 23 C -0.16 -3.61 10.11 22.36 0.23 -3.38 16 24 C 0.08 2.26 11.18 84.67 0.95 3.20 16 25 N -0.50 -18.83 10.27 -183.90 -1.89 -20.72 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.90 7.80 -2.39 -0.02 1.88 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.08 3.00 5.50 -2.39 -0.01 2.99 16 31 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.05 1.49 8.09 -2.39 -0.02 1.47 16 34 H 0.05 2.29 4.15 -2.39 -0.01 2.28 16 35 H 0.02 1.05 8.09 -2.39 -0.02 1.03 16 36 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 37 H 0.08 3.49 8.07 -2.39 -0.02 3.48 16 38 H 0.09 3.45 7.40 -2.39 -0.02 3.44 16 39 H 0.13 4.27 7.81 -2.91 -0.02 4.25 16 40 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 42 H 0.18 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -65.36 354.00 4.64 -60.72 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 1.00 Total: 25.55 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 6.22 Total: 9.98 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -3.63 Total: -98.77 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.98 Total: -41.10 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -65.36 4.64 -60.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264030580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.267 kcal (2) G-P(sol) polarization free energy of solvation -65.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds