Wall clock time and date at job start Tue Mar 31 2020 07:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47173 * 2 1 4 4 N 1.46501 * 109.47220 * 179.97438 * 3 2 1 5 5 C 1.37092 * 120.00229 * 264.74913 * 4 3 2 6 6 H 1.07997 * 119.99878 * 146.16796 * 5 4 3 7 7 C 1.38951 * 119.99891 * 326.16418 * 5 4 3 8 8 N 1.31409 * 120.00494 * 337.68151 * 7 5 4 9 9 Si 1.86801 * 119.99826 * 157.68347 * 7 5 4 10 10 H 1.48504 * 109.47217 * 60.00322 * 9 7 5 11 11 H 1.48504 * 109.47254 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47173 * 300.00308 * 9 7 5 13 13 C 1.34780 * 119.99767 * 84.75396 * 4 3 2 14 14 O 1.21289 * 119.99813 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00109 * 359.97438 * 13 4 3 16 16 N 1.46496 * 109.47018 * 180.02562 * 15 13 4 17 17 C 1.39964 * 119.99721 * 180.02562 * 16 15 13 18 18 C 1.38731 * 120.09246 * 0.02562 * 17 16 15 19 19 C 1.38223 * 119.98053 * 179.97438 * 18 17 16 20 20 C 1.38254 * 120.16080 * 359.97438 * 19 18 17 21 21 C 1.38286 * 120.17972 * 359.97438 * 20 19 18 22 22 C 1.38499 * 120.02245 * 0.02843 * 21 20 19 23 23 O 1.36006 * 120.08594 * 179.97438 * 22 21 20 24 24 C 1.42901 * 116.99855 * 0.02562 * 23 22 21 25 25 H 1.08997 * 109.47408 * 59.99812 * 1 2 3 26 26 H 1.09008 * 109.46944 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47283 * 299.99856 * 1 2 3 28 28 H 1.09004 * 109.47283 * 240.00144 * 2 1 3 29 29 H 1.08997 * 109.47408 * 120.00188 * 2 1 3 30 30 H 1.09004 * 109.46898 * 59.99908 * 3 2 1 31 31 H 1.08997 * 109.47107 * 300.00372 * 3 2 1 32 32 H 0.96997 * 120.00384 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47013 * 60.00553 * 15 13 4 34 34 H 1.09001 * 109.46938 * 300.00683 * 15 13 4 35 35 H 0.96997 * 120.00336 * 0.02562 * 16 15 13 36 36 H 1.07996 * 120.00612 * 359.95627 * 18 17 16 37 37 H 1.08003 * 119.91653 * 179.97438 * 19 18 17 38 38 H 1.07998 * 119.90862 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.98728 * 179.75491 * 21 20 19 40 40 H 1.09006 * 109.47502 * 59.99120 * 24 23 22 41 41 H 1.08993 * 109.47466 * 179.97438 * 24 23 22 42 42 H 1.09004 * 109.46931 * 299.99864 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1899 1.5513 1.1831 6 1 5.1327 1.0400 1.3101 7 6 3.6713 2.3195 2.2183 8 7 2.8002 3.2687 1.9595 9 14 4.2123 2.0029 3.9780 10 1 5.6804 2.1981 4.0872 11 1 3.5186 2.9502 4.8872 12 1 3.8687 0.6092 4.3584 13 6 4.1793 1.3356 -1.1615 14 8 5.3922 1.3361 -1.1610 15 6 3.4263 1.2155 -2.4613 16 7 4.3787 1.1130 -3.5697 17 6 3.9127 0.9921 -4.8839 18 6 2.5492 0.9696 -5.1391 19 6 2.0915 0.8507 -6.4379 20 6 2.9894 0.7545 -7.4848 21 6 4.3499 0.7772 -7.2381 22 6 4.8168 0.8961 -5.9396 23 8 6.1546 0.9181 -5.6954 24 6 7.0222 0.8148 -6.8262 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 2.4378 3.8047 2.6822 33 1 2.7994 2.0962 -2.6008 34 1 2.7999 0.3238 -2.4373 35 1 5.3323 1.1289 -3.3928 36 1 1.8457 1.0448 -4.3232 37 1 1.0299 0.8329 -6.6354 38 1 2.6273 0.6621 -8.4981 39 1 5.0486 0.6978 -8.0578 40 1 6.8346 1.6465 -7.5054 41 1 8.0593 0.8455 -6.4924 42 1 6.8343 -0.1261 -7.3435 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264190402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:26 Heat of formation + Delta-G solvation = -40.659789 kcal Electronic energy + Delta-G solvation = -23481.335496 eV Core-core repulsion = 20040.990484 eV Total energy + Delta-G solvation = -3440.345012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.05702 -38.76271 -37.26789 -35.58656 -34.64165 -32.81301 -31.29342 -29.99030 -29.73968 -27.22962 -26.63384 -25.63648 -24.12274 -22.02165 -21.47658 -20.97085 -19.04776 -18.14963 -17.06322 -16.79445 -16.00641 -15.64033 -15.52176 -15.05595 -14.78083 -14.50619 -14.39147 -13.96965 -13.75976 -13.66234 -13.19015 -13.08866 -12.72221 -12.35844 -12.02311 -11.97111 -11.68631 -11.47946 -11.35581 -11.22568 -11.00181 -10.98543 -10.85508 -10.68796 -10.39627 -10.32743 -10.03923 -9.77318 -8.99737 -8.54579 -8.38453 -7.56710 -6.88604 -6.38897 -4.00339 1.56500 1.78087 3.16034 3.22977 3.26129 3.39781 3.75465 3.79641 4.02962 4.15391 4.79964 4.93793 4.96963 5.06196 5.16678 5.19328 5.35361 5.47940 5.49002 5.53992 5.62479 5.65899 5.74880 5.84197 5.90674 5.94310 6.03058 6.19238 6.31590 6.34793 6.43535 6.49340 6.57499 6.75299 6.87039 6.94046 7.22676 7.30140 7.54759 7.75370 8.16037 8.26172 8.43431 9.10181 9.33264 9.90008 10.64583 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.003987 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.268279 B = 7021.397085 C = 8066.542536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.098 3.902 4 N -0.433 5.433 5 C -0.310 4.310 6 H 0.093 0.907 7 C 0.038 3.962 8 N -0.867 5.867 9 Si 0.919 3.081 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.448 3.552 14 O -0.579 6.579 15 C 0.111 3.889 16 N -0.722 5.722 17 C 0.210 3.790 18 C -0.178 4.178 19 C -0.102 4.102 20 C -0.156 4.156 21 C -0.162 4.162 22 C 0.046 3.954 23 O -0.318 6.318 24 C 0.034 3.966 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.048 0.952 32 H 0.269 0.731 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.591 -4.776 -14.013 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.027 4.027 4 N -0.151 5.151 5 C -0.438 4.438 6 H 0.111 0.889 7 C -0.166 4.166 8 N -0.504 5.504 9 Si 0.745 3.255 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.235 3.765 14 O -0.463 6.463 15 C -0.017 4.017 16 N -0.354 5.354 17 C 0.104 3.896 18 C -0.202 4.202 19 C -0.121 4.121 20 C -0.177 4.177 21 C -0.182 4.182 22 C -0.002 4.002 23 O -0.232 6.232 24 C -0.062 4.062 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.254 0.746 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.069 0.931 41 H 0.114 0.886 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.115 -4.580 -13.504 14.596 hybrid contribution 0.396 -0.049 0.607 0.726 sum -2.719 -4.628 -12.897 13.970 Atomic orbital electron populations 1.21674 0.96169 1.00770 1.01634 1.21982 0.95060 0.99135 1.01789 1.21745 0.81788 0.94691 1.04430 1.43456 1.04735 1.62268 1.04657 1.19432 1.06997 1.28754 0.88596 0.88922 1.25331 0.97195 0.93550 1.00571 1.69907 1.30717 1.16668 1.33149 0.86120 0.79180 0.78327 0.81857 1.19702 1.20914 1.19827 1.20175 0.88189 0.83268 0.84818 1.90513 1.13936 1.55555 1.86284 1.21128 0.92243 1.01582 0.86795 1.44486 1.09965 1.79630 1.01279 1.17298 0.91566 0.97123 0.83624 1.20534 0.92481 1.09438 0.97753 1.20761 0.99199 1.00119 0.91994 1.20578 0.92301 1.06114 0.98709 1.20909 0.96818 1.06012 0.94416 1.18458 0.82673 1.06435 0.92665 1.86052 1.13576 1.89376 1.34211 1.22939 0.93754 1.00638 0.88834 0.93088 0.93383 0.92682 0.93189 0.91605 0.86558 0.93336 0.92052 0.90594 0.90804 0.74563 0.85454 0.86311 0.86634 0.85981 0.93112 0.88621 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.91 37.15 0.37 -1.66 16 2 C -0.14 -2.47 6.17 -26.74 -0.16 -2.63 16 3 C 0.10 2.04 4.71 -4.04 -0.02 2.03 16 4 N -0.43 -10.75 2.56 -114.81 -0.29 -11.04 16 5 C -0.31 -8.47 8.98 -14.94 -0.13 -8.61 16 6 H 0.09 2.66 7.70 -52.49 -0.40 2.26 16 7 C 0.04 0.98 4.92 -17.47 -0.09 0.90 16 8 N -0.87 -22.80 11.33 55.50 0.63 -22.17 16 9 Si 0.92 20.28 29.61 -169.99 -5.03 15.25 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.45 10.91 7.66 -10.98 -0.08 10.83 16 14 O -0.58 -16.11 15.49 5.55 0.09 -16.02 16 15 C 0.11 2.12 4.00 -5.20 -0.02 2.10 16 16 N -0.72 -13.71 5.70 -59.66 -0.34 -14.05 16 17 C 0.21 3.52 6.67 -83.56 -0.56 2.96 16 18 C -0.18 -2.60 9.31 -39.40 -0.37 -2.97 16 19 C -0.10 -1.27 10.04 -39.58 -0.40 -1.67 16 20 C -0.16 -1.88 10.04 -39.56 -0.40 -2.27 16 21 C -0.16 -2.08 9.04 -39.47 -0.36 -2.44 16 22 C 0.05 0.72 6.70 -39.08 -0.26 0.45 16 23 O -0.32 -4.92 9.74 -19.76 -0.19 -5.11 16 24 C 0.03 0.35 9.81 101.05 0.99 1.34 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.84 6.59 -51.93 -0.34 0.49 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.12 2.70 5.34 -51.93 -0.28 2.43 16 31 H 0.05 0.93 6.66 -51.93 -0.35 0.58 16 32 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 33 H 0.08 1.38 7.22 -51.93 -0.38 1.01 16 34 H 0.07 1.28 6.35 -51.93 -0.33 0.95 16 35 H 0.42 8.68 6.80 -40.82 -0.28 8.40 16 36 H 0.13 1.73 6.74 -52.49 -0.35 1.37 16 37 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.25 6.30 -52.49 -0.33 0.92 16 40 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 LS Contribution 343.89 15.07 5.18 5.18 Total: -1.00 -30.88 343.89 -7.37 -38.26 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -5.93 Total: 11.36 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.49 Total: -1.65 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.01 Total: -47.27 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.11 Total: -21.13 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.88 -7.37 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264190402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.400 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds