Wall clock time and date at job start Tue Mar 31 2020 07:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47173 * 2 1 4 4 N 1.46501 * 109.47220 * 179.97438 * 3 2 1 5 5 C 1.37092 * 120.00229 * 264.74913 * 4 3 2 6 6 H 1.07997 * 119.99878 * 146.16796 * 5 4 3 7 7 C 1.38951 * 119.99891 * 326.16418 * 5 4 3 8 8 N 1.31409 * 120.00494 * 337.68151 * 7 5 4 9 9 Si 1.86801 * 119.99826 * 157.68347 * 7 5 4 10 10 H 1.48504 * 109.47217 * 60.00322 * 9 7 5 11 11 H 1.48504 * 109.47254 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47173 * 300.00308 * 9 7 5 13 13 C 1.34780 * 119.99767 * 84.75396 * 4 3 2 14 14 O 1.21289 * 119.99813 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00109 * 359.97438 * 13 4 3 16 16 N 1.46496 * 109.47018 * 180.02562 * 15 13 4 17 17 C 1.39964 * 119.99721 * 180.02562 * 16 15 13 18 18 C 1.38731 * 120.09246 * 0.02562 * 17 16 15 19 19 C 1.38223 * 119.98053 * 179.97438 * 18 17 16 20 20 C 1.38254 * 120.16080 * 359.97438 * 19 18 17 21 21 C 1.38286 * 120.17972 * 359.97438 * 20 19 18 22 22 C 1.38499 * 120.02245 * 0.02843 * 21 20 19 23 23 O 1.36006 * 120.08594 * 179.97438 * 22 21 20 24 24 C 1.42901 * 116.99855 * 0.02562 * 23 22 21 25 25 H 1.08997 * 109.47408 * 59.99812 * 1 2 3 26 26 H 1.09008 * 109.46944 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47283 * 299.99856 * 1 2 3 28 28 H 1.09004 * 109.47283 * 240.00144 * 2 1 3 29 29 H 1.08997 * 109.47408 * 120.00188 * 2 1 3 30 30 H 1.09004 * 109.46898 * 59.99908 * 3 2 1 31 31 H 1.08997 * 109.47107 * 300.00372 * 3 2 1 32 32 H 0.96997 * 120.00384 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47013 * 60.00553 * 15 13 4 34 34 H 1.09001 * 109.46938 * 300.00683 * 15 13 4 35 35 H 0.96997 * 120.00336 * 0.02562 * 16 15 13 36 36 H 1.07996 * 120.00612 * 359.95627 * 18 17 16 37 37 H 1.08003 * 119.91653 * 179.97438 * 19 18 17 38 38 H 1.07998 * 119.90862 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.98728 * 179.75491 * 21 20 19 40 40 H 1.09006 * 109.47502 * 59.99120 * 24 23 22 41 41 H 1.08993 * 109.47466 * 179.97438 * 24 23 22 42 42 H 1.09004 * 109.46931 * 299.99864 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1899 1.5513 1.1831 6 1 5.1327 1.0400 1.3101 7 6 3.6713 2.3195 2.2183 8 7 2.8002 3.2687 1.9595 9 14 4.2123 2.0029 3.9780 10 1 5.6804 2.1981 4.0872 11 1 3.5186 2.9502 4.8872 12 1 3.8687 0.6092 4.3584 13 6 4.1793 1.3356 -1.1615 14 8 5.3922 1.3361 -1.1610 15 6 3.4263 1.2155 -2.4613 16 7 4.3787 1.1130 -3.5697 17 6 3.9127 0.9921 -4.8839 18 6 2.5492 0.9696 -5.1391 19 6 2.0915 0.8507 -6.4379 20 6 2.9894 0.7545 -7.4848 21 6 4.3499 0.7772 -7.2381 22 6 4.8168 0.8961 -5.9396 23 8 6.1546 0.9181 -5.6954 24 6 7.0222 0.8148 -6.8262 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 2.4378 3.8047 2.6822 33 1 2.7994 2.0962 -2.6008 34 1 2.7999 0.3238 -2.4373 35 1 5.3323 1.1289 -3.3928 36 1 1.8457 1.0448 -4.3232 37 1 1.0299 0.8329 -6.6354 38 1 2.6273 0.6621 -8.4981 39 1 5.0486 0.6978 -8.0578 40 1 6.8346 1.6465 -7.5054 41 1 8.0593 0.8455 -6.4924 42 1 6.8343 -0.1261 -7.3435 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264190402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:25 Heat of formation + Delta-G solvation = -60.071902 kcal Electronic energy + Delta-G solvation = -23482.177269 eV Core-core repulsion = 20040.990484 eV Total energy + Delta-G solvation = -3441.186785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.18944 -40.50541 -38.36019 -37.31257 -36.03963 -34.53699 -33.07167 -31.05376 -30.95883 -28.44142 -27.89629 -27.14437 -25.85705 -23.09406 -22.69119 -22.37384 -20.75509 -19.37490 -18.80487 -18.17883 -17.50429 -16.92560 -16.75466 -16.59070 -16.23897 -16.13717 -15.56570 -15.40793 -15.09217 -14.94401 -14.61849 -14.24156 -14.05222 -13.87983 -13.44247 -13.38209 -13.13110 -12.97703 -12.87262 -12.60769 -12.30490 -12.24109 -12.10959 -11.98925 -11.91562 -11.81582 -11.56623 -11.06000 -10.88225 -10.50227 -9.51918 -9.41313 -8.38262 -8.09991 -6.08186 0.53692 0.72961 1.36684 1.40797 1.50705 1.92211 2.19581 2.37415 2.59008 2.96273 2.99510 3.08760 3.86075 3.97308 4.10556 4.17734 4.27379 4.34129 4.38292 4.42293 4.43632 4.46508 4.60381 4.62988 4.72018 4.73774 4.76968 4.96488 4.99733 5.15966 5.28833 5.30979 5.39999 5.45686 5.51663 5.59927 5.74639 5.96735 6.08354 6.21669 6.47493 6.62240 6.83957 7.11212 7.39781 7.96421 8.63676 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.003987 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.268279 B = 7021.397085 C = 8066.542536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.098 3.902 4 N -0.443 5.443 5 C -0.347 4.347 6 H 0.064 0.936 7 C 0.009 3.991 8 N -0.882 5.882 9 Si 0.980 3.020 10 H -0.279 1.279 11 H -0.269 1.269 12 H -0.264 1.264 13 C 0.432 3.568 14 O -0.627 6.627 15 C 0.133 3.867 16 N -0.739 5.739 17 C 0.172 3.828 18 C -0.183 4.183 19 C -0.104 4.104 20 C -0.147 4.147 21 C -0.163 4.163 22 C 0.028 3.972 23 O -0.351 6.351 24 C 0.025 3.975 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.276 0.724 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.401 0.599 36 H 0.134 0.866 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 -5.293 -15.813 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C -0.025 4.025 4 N -0.160 5.160 5 C -0.475 4.475 6 H 0.081 0.919 7 C -0.195 4.195 8 N -0.520 5.520 9 Si 0.804 3.196 10 H -0.204 1.204 11 H -0.193 1.193 12 H -0.189 1.189 13 C 0.222 3.778 14 O -0.514 6.514 15 C 0.005 3.995 16 N -0.372 5.372 17 C 0.069 3.931 18 C -0.206 4.206 19 C -0.122 4.122 20 C -0.167 4.167 21 C -0.182 4.182 22 C -0.020 4.020 23 O -0.266 6.266 24 C -0.069 4.069 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.237 0.763 36 H 0.152 0.848 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.166 0.834 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.327 -5.100 -15.348 17.028 hybrid contribution 1.079 0.140 1.027 1.496 sum -4.248 -4.959 -14.321 15.739 Atomic orbital electron populations 1.21629 0.93007 1.02468 1.02366 1.21882 0.97659 0.96381 1.01191 1.21865 0.79533 0.97029 1.04108 1.43728 1.06294 1.61762 1.04247 1.19368 1.07187 1.30246 0.90706 0.91854 1.26038 0.96973 0.92743 1.03707 1.69967 1.30897 1.16641 1.34451 0.85206 0.78308 0.78834 0.77278 1.20428 1.19332 1.18871 1.21054 0.88054 0.82274 0.86438 1.90464 1.16161 1.57516 1.87261 1.20898 0.91645 1.02771 0.84201 1.44415 1.08903 1.81680 1.02180 1.17681 0.92956 0.99599 0.82847 1.20787 0.91659 1.08999 0.99204 1.21153 1.01006 0.98991 0.91059 1.21067 0.91778 1.03548 1.00280 1.21269 0.98017 1.04982 0.93940 1.18774 0.82792 1.06951 0.93514 1.86016 1.14131 1.89615 1.36800 1.23219 0.93563 1.02015 0.88146 0.91261 0.91200 0.93070 0.92370 0.93658 0.88739 0.91539 0.91420 0.89618 0.88837 0.76291 0.84843 0.83241 0.83242 0.83409 0.91692 0.87544 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.91 71.98 0.71 -2.81 16 2 C -0.13 -4.55 6.17 30.59 0.19 -4.37 16 3 C 0.10 4.12 4.71 86.38 0.41 4.52 16 4 N -0.44 -22.79 2.56 -635.54 -1.63 -24.42 16 5 C -0.35 -19.82 8.98 84.04 0.75 -19.07 16 6 H 0.06 3.90 7.70 -2.91 -0.02 3.88 16 7 C 0.01 0.46 4.92 84.93 0.42 0.88 16 8 N -0.88 -46.85 11.33 21.66 0.25 -46.61 16 9 Si 0.98 42.11 29.61 68.60 2.03 44.14 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 13 C 0.43 22.02 7.66 87.66 0.67 22.69 16 14 O -0.63 -37.10 15.49 -3.06 -0.05 -37.15 16 15 C 0.13 5.17 4.00 85.63 0.34 5.51 16 16 N -0.74 -29.08 5.70 -342.68 -1.95 -31.03 16 17 C 0.17 5.76 6.67 38.22 0.25 6.01 16 18 C -0.18 -5.04 9.31 22.38 0.21 -4.83 16 19 C -0.10 -2.23 10.04 22.27 0.22 -2.01 16 20 C -0.15 -2.96 10.04 22.28 0.22 -2.73 16 21 C -0.16 -3.78 9.04 22.34 0.20 -3.58 16 22 C 0.03 0.85 6.70 22.59 0.15 1.00 16 23 O -0.35 -11.01 9.74 -93.62 -0.91 -11.92 16 24 C 0.02 0.49 9.81 113.37 1.11 1.61 16 25 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.07 1.51 8.14 -2.38 -0.02 1.50 16 27 H 0.05 1.35 8.14 -2.38 -0.02 1.34 16 28 H 0.06 1.89 6.59 -2.38 -0.02 1.87 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 4.44 5.34 -2.38 -0.01 4.43 16 31 H 0.07 2.50 6.66 -2.39 -0.02 2.49 16 32 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 33 H 0.09 3.11 7.22 -2.39 -0.02 3.09 16 34 H 0.09 3.20 6.35 -2.39 -0.02 3.19 16 35 H 0.40 17.87 6.80 -92.71 -0.63 17.24 16 36 H 0.13 3.37 6.74 -2.91 -0.02 3.35 16 37 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.15 2.55 6.30 -2.91 -0.02 2.53 16 40 H 0.06 1.07 7.67 -2.38 -0.02 1.05 16 41 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 Total: -1.00 -70.93 343.89 4.01 -66.91 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: 0.40 Total: 37.25 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 5.87 Total: 2.82 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -3.33 Total: -102.06 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -0.96 Total: -49.07 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -70.93 4.01 -66.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264190402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.843 kcal (2) G-P(sol) polarization free energy of solvation -70.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds