Wall clock time and date at job start Tue Mar 31 2020 07:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47274 * 2 1 4 4 N 1.46903 * 109.46975 * 119.99564 * 2 1 3 5 5 C 1.46901 * 110.99980 * 170.30029 * 4 2 1 6 6 C 1.50696 * 109.47119 * 293.95491 * 5 4 2 7 7 N 1.34780 * 120.00114 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00228 * 0.02562 * 6 5 4 9 9 C 1.46900 * 111.00283 * 294.25574 * 4 2 1 10 10 C 1.50699 * 109.47256 * 163.98591 * 9 4 2 11 11 C 1.38301 * 119.93111 * 275.72799 * 10 9 4 12 12 C 1.38102 * 120.06781 * 179.72702 * 11 10 9 13 13 C 1.38879 * 119.92761 * 0.56508 * 12 11 10 14 14 O 1.35751 * 120.06381 * 179.68398 * 13 12 11 15 15 C 1.34839 * 116.99546 * 185.48030 * 14 13 12 16 16 H 1.07989 * 120.00179 * 4.61705 * 15 14 13 17 17 C 1.38650 * 119.99575 * 184.61054 * 15 14 13 18 18 N 1.31558 * 119.99890 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00515 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47419 * 89.99348 * 19 17 15 21 21 H 1.48493 * 109.47440 * 209.99843 * 19 17 15 22 22 H 1.48506 * 109.46931 * 329.99957 * 19 17 15 23 23 C 1.38873 * 119.86265 * 359.70937 * 13 12 11 24 24 C 1.38095 * 119.93414 * 359.97438 * 23 13 12 25 25 H 1.08995 * 109.47586 * 306.30268 * 1 2 3 26 26 H 1.09005 * 109.47113 * 66.30857 * 1 2 3 27 27 H 1.09003 * 109.46887 * 186.30288 * 1 2 3 28 28 H 1.09000 * 109.47392 * 239.99853 * 2 1 3 29 29 H 1.08996 * 109.47491 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46771 * 299.99844 * 3 2 1 31 31 H 1.09006 * 109.47028 * 59.99199 * 3 2 1 32 32 H 1.09001 * 109.47174 * 53.95412 * 5 4 2 33 33 H 1.08997 * 109.47137 * 173.95688 * 5 4 2 34 34 H 0.97000 * 119.99987 * 359.97438 * 7 6 5 35 35 H 0.96998 * 120.00519 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.46841 * 283.98870 * 9 4 2 37 37 H 1.09000 * 109.46892 * 43.98558 * 9 4 2 38 38 H 1.08007 * 119.96508 * 359.97438 * 11 10 9 39 39 H 1.07995 * 120.03341 * 180.27606 * 12 11 10 40 40 H 0.97000 * 120.00512 * 180.02562 * 18 17 15 41 41 H 1.08005 * 120.03366 * 179.97438 * 23 13 12 42 42 H 1.08002 * 119.96684 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4696 -0.9154 1.1236 6 6 3.7718 -1.8789 0.0050 7 7 5.0463 -2.2335 -0.2532 8 8 2.8683 -2.3346 -0.6635 9 6 1.6640 0.0484 2.4172 10 6 1.8199 -0.8512 3.6161 11 6 0.7931 -1.7045 3.9768 12 6 0.9352 -2.5341 5.0716 13 6 2.1062 -2.5025 5.8176 14 8 2.2463 -3.3122 6.8982 15 6 3.3583 -3.1512 7.6436 16 1 4.0513 -2.3553 7.4145 17 6 3.6117 -4.0074 8.7043 18 7 4.6969 -3.8506 9.4313 19 14 2.4131 -5.3843 9.1003 20 1 2.7955 -6.6054 8.3467 21 1 2.4507 -5.6696 10.5571 22 1 1.0402 -4.9725 8.7117 23 6 3.1332 -1.6404 5.4562 24 6 2.9876 -0.8179 4.3565 25 1 -0.3634 0.6084 0.8281 26 1 -0.3634 0.4129 -0.9411 27 1 -0.3633 -1.0215 0.1128 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.9735 0.0322 0.9330 33 1 3.8231 -1.3316 2.0670 34 1 5.7690 -1.8682 0.2808 35 1 5.2409 -2.8533 -0.9734 36 1 2.3214 0.9114 2.5224 37 1 0.6298 0.3858 2.3481 38 1 -0.1194 -1.7250 3.3992 39 1 0.1347 -3.2035 5.3501 40 1 4.8745 -4.4498 10.1732 41 1 4.0449 -1.6132 6.0346 42 1 3.7861 -0.1476 4.0747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264536352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:12 Heat of formation + Delta-G solvation = -33.376025 kcal Electronic energy + Delta-G solvation = -23451.264617 eV Core-core repulsion = 20011.235453 eV Total energy + Delta-G solvation = -3440.029165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.07211 -39.12381 -37.88116 -36.38494 -33.72822 -32.52886 -32.04790 -30.24308 -30.16889 -27.42737 -26.95460 -25.44407 -23.96251 -22.09901 -21.05644 -20.64525 -19.37059 -17.89890 -17.45549 -17.12907 -16.81266 -16.11099 -15.52498 -14.96596 -14.67397 -14.39070 -14.09268 -13.93194 -13.78398 -13.66180 -13.40382 -13.07885 -12.74917 -12.65158 -12.31531 -12.29385 -12.15553 -11.78152 -11.37931 -11.31123 -11.18650 -10.88333 -10.76498 -10.64624 -10.55371 -10.14805 -9.82779 -9.67223 -9.40766 -8.87083 -8.26609 -8.18368 -7.30512 -6.42676 -4.09011 2.12858 2.19661 2.63784 3.21843 3.25909 3.34787 3.40921 4.02881 4.23612 4.54948 4.84163 4.88785 4.91277 4.97469 5.07206 5.09365 5.20747 5.31951 5.41635 5.43825 5.55148 5.65673 5.67812 5.72015 5.79240 5.83586 5.96518 6.12953 6.17573 6.28320 6.35765 6.59081 6.68744 6.79566 6.94501 7.03859 7.20286 7.26761 7.28217 7.35795 7.62226 7.78911 8.03473 8.24591 8.93011 9.56310 10.65033 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.003646 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.140532 B = 7677.388849 C = 8143.612447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 C -0.189 4.189 4 N -0.507 5.507 5 C 0.029 3.971 6 C 0.519 3.481 7 N -0.861 5.861 8 O -0.527 6.527 9 C 0.108 3.892 10 C -0.170 4.170 11 C -0.051 4.051 12 C -0.193 4.193 13 C 0.161 3.839 14 O -0.218 6.218 15 C -0.389 4.389 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.222 4.222 24 C -0.072 4.072 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.400 0.600 35 H 0.400 0.600 36 H 0.037 0.963 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.279 0.721 41 H 0.132 0.868 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 8.899 -17.550 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.040 4.040 3 C -0.248 4.248 4 N -0.231 5.231 5 C -0.102 4.102 6 C 0.304 3.696 7 N -0.426 5.426 8 O -0.402 6.402 9 C -0.019 4.019 10 C -0.172 4.172 11 C -0.070 4.070 12 C -0.212 4.212 13 C 0.108 3.892 14 O -0.123 6.123 15 C -0.464 4.464 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.241 4.241 24 C -0.091 4.091 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.228 0.772 35 H 0.230 0.770 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.149 0.851 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.529 7.995 -17.557 19.457 hybrid contribution 0.821 0.126 0.326 0.893 sum -1.708 8.121 -17.232 19.126 Atomic orbital electron populations 1.21793 0.94297 1.02686 1.00918 1.21898 0.96185 0.91553 0.94327 1.22543 1.01013 0.98800 1.02404 1.61957 1.10576 1.48675 1.01844 1.22027 0.91371 0.97788 0.99039 1.20646 0.82410 0.81882 0.84679 1.43888 1.08435 1.51104 1.39135 1.90703 1.44921 1.54518 1.50040 1.20912 1.00931 0.93023 0.86990 1.19187 0.96049 1.03237 0.98695 1.20458 0.97783 0.94022 0.94719 1.20232 0.97249 1.04841 0.98873 1.19147 0.93237 0.89943 0.86841 1.83592 1.42441 1.52829 1.33459 1.20752 0.98937 1.16870 1.09887 0.87705 1.24458 0.96533 0.97981 0.95006 1.69644 1.24612 1.38603 1.19004 0.86187 0.82073 0.81354 0.77351 1.19902 1.20791 1.18313 1.21220 1.00934 1.01277 1.00638 1.20636 0.96052 0.97714 0.94725 0.92877 0.92704 0.91472 0.88570 0.93063 0.92221 0.92185 0.92053 0.86994 0.77159 0.76988 0.94487 0.89997 0.86849 0.86608 0.91073 0.85077 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.00 37.16 0.33 -1.14 16 2 C 0.07 0.78 2.56 -67.71 -0.17 0.61 16 3 C -0.19 -1.74 8.50 37.16 0.32 -1.43 16 4 N -0.51 -6.50 4.14 -229.52 -0.95 -7.45 16 5 C 0.03 0.33 5.16 -4.98 -0.03 0.31 16 6 C 0.52 6.39 7.74 -10.99 -0.08 6.30 16 7 N -0.86 -7.10 8.87 31.22 0.28 -6.82 16 8 O -0.53 -8.52 15.23 5.56 0.08 -8.44 16 9 C 0.11 1.37 3.85 -4.98 -0.02 1.35 16 10 C -0.17 -2.71 4.92 -104.58 -0.51 -3.23 16 11 C -0.05 -0.88 9.71 -39.61 -0.38 -1.26 16 12 C -0.19 -3.84 9.99 -39.39 -0.39 -4.23 16 13 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 14 O -0.22 -5.75 8.59 0.02 0.00 -5.74 16 15 C -0.39 -10.87 9.91 30.88 0.31 -10.56 16 16 H 0.11 2.98 5.51 -52.49 -0.29 2.69 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -25.25 13.96 55.48 0.77 -24.48 16 19 Si 0.90 21.68 28.62 -169.99 -4.86 16.82 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.22 -4.61 9.14 -39.40 -0.36 -4.97 16 24 C -0.07 -1.23 8.28 -39.61 -0.33 -1.56 16 25 H 0.05 0.52 6.55 -51.93 -0.34 0.18 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 1.26 5.79 -51.93 -0.30 0.96 16 29 H 0.05 0.45 6.57 -51.93 -0.34 0.11 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.55 6.70 -51.93 -0.35 0.20 16 32 H 0.06 0.57 6.39 -51.93 -0.33 0.24 16 33 H 0.11 1.39 6.17 -51.93 -0.32 1.07 16 34 H 0.40 2.20 8.83 -40.82 -0.36 1.84 16 35 H 0.40 2.90 8.93 -40.82 -0.36 2.53 16 36 H 0.04 0.43 7.04 -51.93 -0.37 0.06 16 37 H 0.08 0.98 6.01 -51.93 -0.31 0.67 16 38 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.13 2.88 5.70 -52.48 -0.30 2.58 16 42 H 0.10 1.48 8.04 -52.49 -0.42 1.05 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -32.03 338.70 -6.90 -38.93 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.64 Total: 6.81 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -1.68 Total: -14.73 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.10 Total: -38.76 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.08 Total: -14.18 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.86 Total: 16.82 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.03 -6.90 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264536352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.557 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds