Wall clock time and date at job start Tue Mar 31 2020 07:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47274 * 2 1 4 4 N 1.46903 * 109.46975 * 119.99564 * 2 1 3 5 5 C 1.46901 * 110.99980 * 170.30029 * 4 2 1 6 6 C 1.50696 * 109.47119 * 293.95491 * 5 4 2 7 7 N 1.34780 * 120.00114 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00228 * 0.02562 * 6 5 4 9 9 C 1.46900 * 111.00283 * 294.25574 * 4 2 1 10 10 C 1.50699 * 109.47256 * 163.98591 * 9 4 2 11 11 C 1.38301 * 119.93111 * 275.72799 * 10 9 4 12 12 C 1.38102 * 120.06781 * 179.72702 * 11 10 9 13 13 C 1.38879 * 119.92761 * 0.56508 * 12 11 10 14 14 O 1.35751 * 120.06381 * 179.68398 * 13 12 11 15 15 C 1.34839 * 116.99546 * 185.48030 * 14 13 12 16 16 H 1.07989 * 120.00179 * 4.61705 * 15 14 13 17 17 C 1.38650 * 119.99575 * 184.61054 * 15 14 13 18 18 N 1.31558 * 119.99890 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00515 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47419 * 89.99348 * 19 17 15 21 21 H 1.48493 * 109.47440 * 209.99843 * 19 17 15 22 22 H 1.48506 * 109.46931 * 329.99957 * 19 17 15 23 23 C 1.38873 * 119.86265 * 359.70937 * 13 12 11 24 24 C 1.38095 * 119.93414 * 359.97438 * 23 13 12 25 25 H 1.08995 * 109.47586 * 306.30268 * 1 2 3 26 26 H 1.09005 * 109.47113 * 66.30857 * 1 2 3 27 27 H 1.09003 * 109.46887 * 186.30288 * 1 2 3 28 28 H 1.09000 * 109.47392 * 239.99853 * 2 1 3 29 29 H 1.08996 * 109.47491 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46771 * 299.99844 * 3 2 1 31 31 H 1.09006 * 109.47028 * 59.99199 * 3 2 1 32 32 H 1.09001 * 109.47174 * 53.95412 * 5 4 2 33 33 H 1.08997 * 109.47137 * 173.95688 * 5 4 2 34 34 H 0.97000 * 119.99987 * 359.97438 * 7 6 5 35 35 H 0.96998 * 120.00519 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.46841 * 283.98870 * 9 4 2 37 37 H 1.09000 * 109.46892 * 43.98558 * 9 4 2 38 38 H 1.08007 * 119.96508 * 359.97438 * 11 10 9 39 39 H 1.07995 * 120.03341 * 180.27606 * 12 11 10 40 40 H 0.97000 * 120.00512 * 180.02562 * 18 17 15 41 41 H 1.08005 * 120.03366 * 179.97438 * 23 13 12 42 42 H 1.08002 * 119.96684 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4696 -0.9154 1.1236 6 6 3.7718 -1.8789 0.0050 7 7 5.0463 -2.2335 -0.2532 8 8 2.8683 -2.3346 -0.6635 9 6 1.6640 0.0484 2.4172 10 6 1.8199 -0.8512 3.6161 11 6 0.7931 -1.7045 3.9768 12 6 0.9352 -2.5341 5.0716 13 6 2.1062 -2.5025 5.8176 14 8 2.2463 -3.3122 6.8982 15 6 3.3583 -3.1512 7.6436 16 1 4.0513 -2.3553 7.4145 17 6 3.6117 -4.0074 8.7043 18 7 4.6969 -3.8506 9.4313 19 14 2.4131 -5.3843 9.1003 20 1 2.7955 -6.6054 8.3467 21 1 2.4507 -5.6696 10.5571 22 1 1.0402 -4.9725 8.7117 23 6 3.1332 -1.6404 5.4562 24 6 2.9876 -0.8179 4.3565 25 1 -0.3634 0.6084 0.8281 26 1 -0.3634 0.4129 -0.9411 27 1 -0.3633 -1.0215 0.1128 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.9735 0.0322 0.9330 33 1 3.8231 -1.3316 2.0670 34 1 5.7690 -1.8682 0.2808 35 1 5.2409 -2.8533 -0.9734 36 1 2.3214 0.9114 2.5224 37 1 0.6298 0.3858 2.3481 38 1 -0.1194 -1.7250 3.3992 39 1 0.1347 -3.2035 5.3501 40 1 4.8745 -4.4498 10.1732 41 1 4.0449 -1.6132 6.0346 42 1 3.7861 -0.1476 4.0747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264536352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:11 Heat of formation + Delta-G solvation = -57.219504 kcal Electronic energy + Delta-G solvation = -23452.298548 eV Core-core repulsion = 20011.235453 eV Total energy + Delta-G solvation = -3441.063095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.17003 -40.61901 -39.07294 -37.81250 -34.61599 -34.46899 -33.15238 -31.76333 -31.41228 -28.49144 -27.90517 -27.15165 -25.19128 -23.65435 -22.22784 -21.82473 -20.36872 -19.76892 -19.05869 -18.14757 -17.74340 -17.12589 -16.64061 -16.43903 -16.10938 -15.66222 -15.50939 -15.40722 -15.18564 -14.83378 -14.56260 -14.31477 -14.17676 -14.02538 -13.82107 -13.51238 -13.18805 -12.94814 -12.68744 -12.43167 -12.42575 -12.41159 -12.02877 -11.94828 -11.84269 -11.60130 -11.25154 -10.89261 -10.78598 -10.53783 -9.74894 -9.15634 -8.91629 -8.49125 -6.20573 0.61282 0.66510 1.31611 1.35153 1.51855 1.70804 2.28605 2.48321 2.78990 3.05883 3.14750 3.32138 3.99318 4.03454 4.07343 4.14110 4.21272 4.27706 4.32959 4.43159 4.54206 4.56331 4.63105 4.72855 4.83066 4.83592 4.93493 5.01256 5.08568 5.15403 5.30182 5.34363 5.42016 5.47248 5.62003 5.79376 5.82871 5.93524 5.95585 6.13026 6.23080 6.32614 6.54773 6.86056 7.42353 7.62353 8.62462 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.003646 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.140532 B = 7677.388849 C = 8143.612447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 C -0.183 4.183 4 N -0.526 5.526 5 C 0.028 3.972 6 C 0.514 3.486 7 N -0.843 5.843 8 O -0.572 6.572 9 C 0.112 3.888 10 C -0.144 4.144 11 C -0.050 4.050 12 C -0.196 4.196 13 C 0.118 3.882 14 O -0.249 6.249 15 C -0.396 4.396 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.966 3.034 20 H -0.268 1.268 21 H -0.267 1.267 22 H -0.264 1.264 23 C -0.234 4.234 24 C -0.065 4.065 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.416 0.584 35 H 0.406 0.594 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.142 0.858 39 H 0.121 0.879 40 H 0.284 0.716 41 H 0.110 0.890 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 10.514 -19.710 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.037 4.037 3 C -0.241 4.241 4 N -0.251 5.251 5 C -0.103 4.103 6 C 0.299 3.701 7 N -0.408 5.408 8 O -0.451 6.451 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.069 4.069 12 C -0.215 4.215 13 C 0.069 3.931 14 O -0.157 6.157 15 C -0.473 4.473 16 H 0.101 0.899 17 C -0.187 4.187 18 N -0.564 5.564 19 Si 0.789 3.211 20 H -0.193 1.193 21 H -0.191 1.191 22 H -0.189 1.189 23 C -0.253 4.253 24 C -0.083 4.083 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.246 0.754 35 H 0.238 0.762 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.160 0.840 39 H 0.139 0.861 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.300 9.640 -19.751 22.224 hybrid contribution 1.049 -0.174 0.658 1.250 sum -2.251 9.465 -19.093 21.429 Atomic orbital electron populations 1.21787 0.93882 1.01752 1.02131 1.21838 0.96490 0.92562 0.92790 1.22473 1.01322 0.97086 1.03244 1.61835 1.11519 1.49483 1.02237 1.22069 0.91102 0.98878 0.98216 1.20878 0.82920 0.81759 0.84529 1.43744 1.07768 1.50279 1.38968 1.90691 1.46439 1.56271 1.51730 1.20921 1.02541 0.92596 0.85415 1.19675 0.94543 1.01581 0.98674 1.20852 0.99280 0.93064 0.93694 1.20489 0.96360 1.05423 0.99232 1.19677 0.95128 0.90988 0.87273 1.83532 1.41992 1.54893 1.35241 1.20707 0.99270 1.16596 1.10694 0.89911 1.25215 0.98228 1.00292 0.94947 1.69719 1.26372 1.40181 1.20111 0.85274 0.79445 0.78507 0.77858 1.19321 1.19140 1.18887 1.21253 0.99883 1.02206 1.01964 1.20951 0.97473 0.96925 0.92990 0.91792 0.91412 0.93433 0.90486 0.92525 0.91232 0.91520 0.89147 0.87828 0.75355 0.76249 0.92248 0.88575 0.84001 0.86073 0.90634 0.87250 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.00 71.98 0.65 -1.88 16 2 C 0.07 1.40 2.56 44.91 0.12 1.51 16 3 C -0.18 -2.61 8.50 71.98 0.61 -2.00 16 4 N -0.53 -11.77 4.14 -880.08 -3.64 -15.42 16 5 C 0.03 0.56 5.16 85.56 0.44 1.00 16 6 C 0.51 11.65 7.74 87.66 0.68 12.33 16 7 N -0.84 -12.09 8.87 -173.53 -1.54 -13.63 16 8 O -0.57 -17.97 15.23 -3.03 -0.05 -18.02 16 9 C 0.11 2.34 3.85 85.56 0.33 2.67 16 10 C -0.14 -4.10 4.92 -19.83 -0.10 -4.20 16 11 C -0.05 -1.60 9.71 22.25 0.22 -1.38 16 12 C -0.20 -7.68 9.99 22.39 0.22 -7.46 16 13 C 0.12 5.53 6.65 22.58 0.15 5.68 16 14 O -0.25 -13.63 8.59 -22.84 -0.20 -13.82 16 15 C -0.40 -23.28 9.91 67.92 0.67 -22.61 16 16 H 0.08 5.04 5.51 -2.92 -0.02 5.03 16 17 C 0.01 0.67 5.49 84.83 0.47 1.13 16 18 N -0.92 -54.88 13.96 21.61 0.30 -54.58 16 19 Si 0.97 45.83 28.62 68.60 1.96 47.79 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 23 C -0.23 -9.87 9.14 22.39 0.20 -9.67 16 24 C -0.06 -2.05 8.28 22.25 0.18 -1.87 16 25 H 0.06 1.01 6.55 -2.39 -0.02 1.00 16 26 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.88 5.79 -2.39 -0.01 1.86 16 29 H 0.06 0.75 6.57 -2.39 -0.02 0.73 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.88 6.70 -2.38 -0.02 0.87 16 32 H 0.09 1.27 6.39 -2.39 -0.02 1.26 16 33 H 0.10 2.25 6.17 -2.39 -0.01 2.23 16 34 H 0.42 3.47 8.83 -92.71 -0.82 2.65 16 35 H 0.41 5.15 8.93 -92.71 -0.83 4.32 16 36 H 0.06 1.04 7.04 -2.39 -0.02 1.02 16 37 H 0.10 1.82 6.01 -2.39 -0.01 1.81 16 38 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 39 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 40 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.11 5.07 5.70 -2.91 -0.02 5.05 16 42 H 0.14 3.43 8.04 -2.91 -0.02 3.40 16 Total: -1.00 -72.99 338.70 1.10 -71.89 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.58 Total: 22.52 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 4.84 Total: -26.73 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -4.88 Total: -83.63 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.24 Total: -31.84 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.96 Total: 47.79 kcal Total: -72.99 1.10 -71.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264536352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.669 kcal (2) G-P(sol) polarization free energy of solvation -72.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds