Wall clock time and date at job start Tue Mar 31 2020 06:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.47077 * 2 1 4 4 H 1.08997 * 109.46741 * 54.99751 * 3 2 1 5 5 O 1.42900 * 109.46965 * 294.99845 * 3 2 1 6 6 C 1.53002 * 109.46962 * 174.99836 * 3 2 1 7 7 C 1.53003 * 109.46847 * 184.99712 * 6 3 2 8 8 N 1.46500 * 109.46970 * 180.02562 * 7 6 3 9 9 C 1.34776 * 119.99658 * 180.02562 * 8 7 6 10 10 O 1.21577 * 120.00172 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99540 * 180.02562 * 9 8 7 12 12 C 1.39237 * 119.99870 * 176.69690 * 11 9 8 13 13 C 1.39484 * 119.83508 * 217.52432 * 12 11 9 14 14 C 1.36377 * 120.16761 * 179.76183 * 13 12 11 15 15 C 1.40868 * 119.82763 * 0.52754 * 14 13 12 16 16 C 1.41161 * 120.15841 * 179.69644 * 15 14 13 17 17 H 1.08004 * 119.99022 * 157.94829 * 16 15 14 18 18 C 1.39887 * 120.00340 * 337.95115 * 16 15 14 19 19 N 1.30878 * 120.00169 * 327.61261 * 18 16 15 20 20 Si 1.86804 * 120.00019 * 147.61542 * 18 16 15 21 21 H 1.48504 * 109.46871 * 94.98678 * 20 18 16 22 22 H 1.48500 * 109.47163 * 214.98407 * 20 18 16 23 23 H 1.48499 * 109.47209 * 334.98745 * 20 18 16 24 24 C 1.40869 * 119.67534 * 359.72592 * 15 14 13 25 25 C 1.36374 * 119.82661 * 359.97438 * 24 15 14 26 26 H 1.08998 * 109.46678 * 59.99979 * 1 2 3 27 27 H 1.08999 * 109.46770 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46961 * 300.00042 * 1 2 3 29 29 H 1.08997 * 109.47428 * 240.00161 * 2 1 3 30 30 H 1.09000 * 109.47053 * 119.99650 * 2 1 3 31 31 H 0.96696 * 114.00291 * 300.00082 * 5 3 2 32 32 H 1.08996 * 109.46992 * 65.00220 * 6 3 2 33 33 H 1.08997 * 109.47038 * 305.00234 * 6 3 2 34 34 H 1.09005 * 109.46918 * 60.00259 * 7 6 3 35 35 H 1.08999 * 109.47240 * 300.00294 * 7 6 3 36 36 H 0.96998 * 119.99889 * 359.97438 * 8 7 6 37 37 H 0.97001 * 120.00137 * 356.69811 * 11 9 8 38 38 H 1.08000 * 119.91419 * 359.97438 * 13 12 11 39 39 H 1.08001 * 120.08187 * 180.25671 * 14 13 12 40 40 H 0.96998 * 120.00557 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.08391 * 179.97438 * 24 15 14 42 42 H 1.07997 * 119.91670 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 3.5649 1.4444 0.1258 7 6 4.0645 2.8851 0.2511 8 7 5.5246 2.8869 0.3709 9 6 6.1891 4.0529 0.4942 10 8 5.5769 5.1032 0.5065 11 7 7.5325 4.0546 0.6039 12 6 8.2247 5.2613 0.6620 13 6 9.4586 5.3849 0.0235 14 6 10.1402 6.5651 0.0720 15 6 9.6002 7.6576 0.7786 16 6 10.3027 8.8805 0.8387 17 1 9.7732 9.7974 1.0515 18 6 11.6846 8.9047 0.6225 19 7 12.4213 7.8847 0.9829 20 14 12.4784 10.3929 -0.1804 21 1 12.9840 11.3117 0.8711 22 1 13.6086 9.9498 -1.0357 23 1 11.4739 11.1001 -1.0145 24 6 8.3559 7.5235 1.4254 25 6 7.6832 6.3389 1.3629 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0142 1.6543 -2.0139 32 1 4.0030 0.9837 -0.7596 33 1 3.8571 0.8801 1.0113 34 1 3.6264 3.3459 1.1365 35 1 3.7723 3.4494 -0.6345 36 1 6.0130 2.0489 0.3622 37 1 8.0170 3.2151 0.6423 38 1 9.8737 4.5448 -0.5135 39 1 11.0936 6.6606 -0.4264 40 1 13.3795 7.9016 0.8334 41 1 7.9360 8.3566 1.9693 42 1 6.7294 6.2343 1.8586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268773656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:05 Heat of formation + Delta-G solvation = -77.145885 kcal Electronic energy + Delta-G solvation = -22167.620923 eV Core-core repulsion = 18725.693754 eV Total energy + Delta-G solvation = -3441.927168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -39.84338 -38.55781 -37.35450 -34.99166 -34.24156 -33.20853 -32.95935 -30.87254 -29.49119 -28.78280 -26.08280 -24.60647 -22.40718 -21.78612 -21.48530 -20.75050 -20.02033 -17.95751 -17.25256 -16.69911 -16.63848 -16.22033 -15.45586 -15.17617 -15.12937 -14.34884 -14.12208 -13.94801 -13.86366 -13.40225 -12.93156 -12.82373 -12.62505 -12.36458 -12.03044 -11.95961 -11.83055 -11.59795 -11.37627 -11.28659 -11.11232 -11.08813 -10.90407 -10.48428 -10.29448 -10.12962 -9.68158 -9.53484 -9.08905 -8.86100 -8.62773 -7.48683 -7.07439 -6.82204 -4.21289 2.71143 3.04262 3.07791 3.10948 3.16074 3.24511 3.77439 3.93257 4.02185 4.31321 4.51820 4.56369 4.64249 4.79697 4.83763 4.94237 5.13370 5.29736 5.40723 5.44198 5.55822 5.70180 5.73067 5.87891 5.93353 5.95998 6.23829 6.48001 6.65803 6.83502 6.91483 7.05801 7.16116 7.33282 7.34111 7.37712 7.65040 7.93628 8.01600 8.09033 8.32348 8.56448 8.61429 8.89841 8.97363 9.19788 10.07493 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.054036 B = 0.002272 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.049902 B =12322.263179 C =12495.103129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.155 4.155 3 C 0.109 3.891 4 H 0.102 0.898 5 O -0.557 6.557 6 C -0.164 4.164 7 C 0.144 3.856 8 N -0.756 5.756 9 C 0.693 3.307 10 O -0.579 6.579 11 N -0.666 5.666 12 C -0.001 4.001 13 C -0.105 4.105 14 C -0.170 4.170 15 C 0.111 3.889 16 C -0.467 4.467 17 H 0.081 0.919 18 C 0.088 3.912 19 N -0.772 5.772 20 Si 0.895 3.105 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.258 1.258 24 C -0.222 4.222 25 C -0.067 4.067 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.374 0.626 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.390 0.610 37 H 0.389 0.611 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.282 0.718 41 H 0.094 0.906 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.022 -16.714 -2.472 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C 0.049 3.951 4 H 0.120 0.880 5 O -0.363 6.363 6 C -0.202 4.202 7 C 0.019 3.981 8 N -0.413 5.413 9 C 0.393 3.607 10 O -0.456 6.456 11 N -0.312 5.312 12 C -0.093 4.093 13 C -0.125 4.125 14 C -0.190 4.190 15 C 0.108 3.892 16 C -0.495 4.495 17 H 0.099 0.901 18 C -0.133 4.133 19 N -0.395 5.395 20 Si 0.718 3.282 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.181 1.181 24 C -0.242 4.242 25 C -0.087 4.087 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.221 0.779 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.223 0.777 37 H 0.222 0.778 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.683 -15.427 -2.023 20.720 hybrid contribution 1.361 -0.750 -0.642 1.681 sum -12.322 -16.178 -2.665 20.510 Atomic orbital electron populations 1.21709 0.95044 1.01421 1.02563 1.22242 0.97241 0.97090 1.02753 1.21907 0.92210 0.92806 0.88154 0.88030 1.86631 1.76839 1.57226 1.15557 1.22540 0.97019 0.97338 1.03287 1.21030 0.78813 0.95682 1.02545 1.45131 1.07430 1.07410 1.81321 1.16040 0.82231 0.83873 0.78515 1.90913 1.67189 1.30096 1.57391 1.42059 1.04362 1.08344 1.76475 1.16864 0.95659 0.86458 1.10357 1.20151 0.94955 0.97533 0.99897 1.20598 1.00789 0.93244 1.04390 1.17591 0.90913 0.92500 0.88192 1.19482 0.92012 0.94847 1.43174 0.90074 1.25920 0.97679 0.97199 0.92483 1.69953 1.07215 1.31441 1.30902 0.86531 0.79126 0.82174 0.80345 1.19519 1.19950 1.18120 1.20604 0.99112 0.97035 1.07493 1.20334 0.98161 0.93088 0.97104 0.91993 0.92910 0.92653 0.91644 0.91023 0.77937 0.90990 0.90411 0.91937 0.91114 0.77695 0.77785 0.89383 0.87520 0.90707 0.88780 0.87894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.81 37.16 0.36 -0.53 16 2 C -0.16 -0.85 5.61 -26.73 -0.15 -1.00 16 3 C 0.11 0.77 2.97 -26.73 -0.08 0.69 16 4 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 5 O -0.56 -4.74 12.41 -35.23 -0.44 -5.17 16 6 C -0.16 -1.15 5.01 -26.73 -0.13 -1.29 16 7 C 0.14 1.66 5.57 -4.04 -0.02 1.63 16 8 N -0.76 -9.70 5.56 -65.22 -0.36 -10.06 16 9 C 0.69 12.83 8.37 -86.92 -0.73 12.11 16 10 O -0.58 -13.43 13.96 5.30 0.07 -13.36 16 11 N -0.67 -12.26 5.30 -14.10 -0.07 -12.33 16 12 C 0.00 -0.02 6.25 -83.57 -0.52 -0.54 16 13 C -0.10 -2.46 9.90 -39.79 -0.39 -2.85 16 14 C -0.17 -4.44 8.74 -39.26 -0.34 -4.79 16 15 C 0.11 3.03 5.57 -106.80 -0.60 2.44 16 16 C -0.47 -12.60 8.94 -37.86 -0.34 -12.93 16 17 H 0.08 2.12 8.02 -52.48 -0.42 1.70 16 18 C 0.09 2.22 4.77 -17.34 -0.08 2.14 16 19 N -0.77 -19.76 11.78 55.54 0.65 -19.10 16 20 Si 0.89 18.51 29.66 -169.99 -5.04 13.47 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 24 C -0.22 -5.85 9.74 -39.26 -0.38 -6.23 16 25 C -0.07 -1.68 8.59 -39.79 -0.34 -2.02 16 26 H 0.06 0.41 7.82 -51.93 -0.41 0.01 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.37 1.93 9.05 45.56 0.41 2.34 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.96 7.82 -51.93 -0.41 0.55 16 36 H 0.39 3.65 8.49 -40.82 -0.35 3.30 16 37 H 0.39 5.61 8.84 -40.82 -0.36 5.25 16 38 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.11 2.81 6.53 -52.49 -0.34 2.47 16 40 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 41 H 0.09 2.36 8.06 -52.49 -0.42 1.93 16 42 H 0.10 2.58 6.45 -52.49 -0.34 2.24 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -32.69 352.39 -9.20 -41.89 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -5.57 Total: 12.54 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -3.75 Total: -13.17 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.22 Total: -41.50 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.36 Total: -18.53 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.04 Total: 13.47 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.69 -9.20 -41.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268773656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.259 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds