Wall clock time and date at job start Tue Mar 31 2020 06:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.47077 * 2 1 4 4 H 1.08997 * 109.46741 * 54.99751 * 3 2 1 5 5 O 1.42900 * 109.46965 * 294.99845 * 3 2 1 6 6 C 1.53002 * 109.46962 * 174.99836 * 3 2 1 7 7 C 1.53003 * 109.46847 * 184.99712 * 6 3 2 8 8 N 1.46500 * 109.46970 * 180.02562 * 7 6 3 9 9 C 1.34776 * 119.99658 * 180.02562 * 8 7 6 10 10 O 1.21577 * 120.00172 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99540 * 180.02562 * 9 8 7 12 12 C 1.39237 * 119.99870 * 176.69690 * 11 9 8 13 13 C 1.39484 * 119.83508 * 217.52432 * 12 11 9 14 14 C 1.36377 * 120.16761 * 179.76183 * 13 12 11 15 15 C 1.40868 * 119.82763 * 0.52754 * 14 13 12 16 16 C 1.41161 * 120.15841 * 179.69644 * 15 14 13 17 17 H 1.08004 * 119.99022 * 157.94829 * 16 15 14 18 18 C 1.39887 * 120.00340 * 337.95115 * 16 15 14 19 19 N 1.30878 * 120.00169 * 327.61261 * 18 16 15 20 20 Si 1.86804 * 120.00019 * 147.61542 * 18 16 15 21 21 H 1.48504 * 109.46871 * 94.98678 * 20 18 16 22 22 H 1.48500 * 109.47163 * 214.98407 * 20 18 16 23 23 H 1.48499 * 109.47209 * 334.98745 * 20 18 16 24 24 C 1.40869 * 119.67534 * 359.72592 * 15 14 13 25 25 C 1.36374 * 119.82661 * 359.97438 * 24 15 14 26 26 H 1.08998 * 109.46678 * 59.99979 * 1 2 3 27 27 H 1.08999 * 109.46770 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46961 * 300.00042 * 1 2 3 29 29 H 1.08997 * 109.47428 * 240.00161 * 2 1 3 30 30 H 1.09000 * 109.47053 * 119.99650 * 2 1 3 31 31 H 0.96696 * 114.00291 * 300.00082 * 5 3 2 32 32 H 1.08996 * 109.46992 * 65.00220 * 6 3 2 33 33 H 1.08997 * 109.47038 * 305.00234 * 6 3 2 34 34 H 1.09005 * 109.46918 * 60.00259 * 7 6 3 35 35 H 1.08999 * 109.47240 * 300.00294 * 7 6 3 36 36 H 0.96998 * 119.99889 * 359.97438 * 8 7 6 37 37 H 0.97001 * 120.00137 * 356.69811 * 11 9 8 38 38 H 1.08000 * 119.91419 * 359.97438 * 13 12 11 39 39 H 1.08001 * 120.08187 * 180.25671 * 14 13 12 40 40 H 0.96998 * 120.00557 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.08391 * 179.97438 * 24 15 14 42 42 H 1.07997 * 119.91670 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 3.5649 1.4444 0.1258 7 6 4.0645 2.8851 0.2511 8 7 5.5246 2.8869 0.3709 9 6 6.1891 4.0529 0.4942 10 8 5.5769 5.1032 0.5065 11 7 7.5325 4.0546 0.6039 12 6 8.2247 5.2613 0.6620 13 6 9.4586 5.3849 0.0235 14 6 10.1402 6.5651 0.0720 15 6 9.6002 7.6576 0.7786 16 6 10.3027 8.8805 0.8387 17 1 9.7732 9.7974 1.0515 18 6 11.6846 8.9047 0.6225 19 7 12.4213 7.8847 0.9829 20 14 12.4784 10.3929 -0.1804 21 1 12.9840 11.3117 0.8711 22 1 13.6086 9.9498 -1.0357 23 1 11.4739 11.1001 -1.0145 24 6 8.3559 7.5235 1.4254 25 6 7.6832 6.3389 1.3629 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0142 1.6543 -2.0139 32 1 4.0030 0.9837 -0.7596 33 1 3.8571 0.8801 1.0113 34 1 3.6264 3.3459 1.1365 35 1 3.7723 3.4494 -0.6345 36 1 6.0130 2.0489 0.3622 37 1 8.0170 3.2151 0.6423 38 1 9.8737 4.5448 -0.5135 39 1 11.0936 6.6606 -0.4264 40 1 13.3795 7.9016 0.8334 41 1 7.9360 8.3566 1.9693 42 1 6.7294 6.2343 1.8586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268773656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:03 Heat of formation + Delta-G solvation = -100.772372 kcal Electronic energy + Delta-G solvation = -22168.645444 eV Core-core repulsion = 18725.693754 eV Total energy + Delta-G solvation = -3442.951690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.35704 -39.44167 -38.94178 -36.38558 -35.82324 -34.77545 -33.72368 -31.89149 -31.41447 -30.52487 -27.22991 -26.11496 -23.61864 -22.94199 -22.53891 -22.28846 -21.59918 -19.49363 -19.10439 -18.21264 -17.33223 -17.04777 -16.91905 -16.45894 -16.36305 -15.75186 -15.48417 -15.33865 -14.91309 -14.70947 -14.44310 -14.00018 -13.92424 -13.80019 -13.46844 -13.33861 -12.88291 -12.82404 -12.66772 -12.49394 -12.32538 -12.20444 -11.93061 -11.79964 -11.63653 -11.57315 -11.30305 -10.97220 -10.77079 -10.50407 -10.06883 -9.46386 -8.96631 -8.69489 -6.21113 0.88008 1.14908 1.38606 1.45603 1.56878 1.80774 2.19640 2.23192 2.67709 3.35636 3.55705 3.72529 3.78772 3.98569 4.13064 4.29474 4.31984 4.40209 4.50573 4.58539 4.67699 4.78001 4.90477 4.95544 5.06464 5.08712 5.13120 5.14183 5.17514 5.29385 5.37346 5.43546 5.46373 5.52086 5.64393 5.80031 6.04348 6.13052 6.25384 6.38698 6.63873 6.90856 6.91638 7.01693 7.20922 7.70534 8.22459 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.054036 B = 0.002272 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.049902 B =12322.263179 C =12495.103129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C 0.108 3.892 4 H 0.088 0.912 5 O -0.580 6.580 6 C -0.147 4.147 7 C 0.142 3.858 8 N -0.729 5.729 9 C 0.689 3.311 10 O -0.630 6.630 11 N -0.657 5.657 12 C 0.012 3.988 13 C -0.101 4.101 14 C -0.188 4.188 15 C 0.081 3.919 16 C -0.507 4.507 17 H 0.073 0.927 18 C 0.052 3.948 19 N -0.799 5.799 20 Si 0.972 3.028 21 H -0.260 1.260 22 H -0.260 1.260 23 H -0.263 1.263 24 C -0.245 4.245 25 C -0.078 4.078 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.387 0.613 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.413 0.587 37 H 0.413 0.587 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.294 0.706 41 H 0.090 0.910 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.436 -19.063 -3.366 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 C 0.049 3.951 4 H 0.106 0.894 5 O -0.388 6.388 6 C -0.185 4.185 7 C 0.018 3.982 8 N -0.386 5.386 9 C 0.389 3.611 10 O -0.510 6.510 11 N -0.305 5.305 12 C -0.082 4.082 13 C -0.121 4.121 14 C -0.208 4.208 15 C 0.079 3.921 16 C -0.534 4.534 17 H 0.091 0.909 18 C -0.167 4.167 19 N -0.422 5.422 20 Si 0.791 3.209 21 H -0.184 1.184 22 H -0.184 1.184 23 H -0.187 1.187 24 C -0.265 4.265 25 C -0.099 4.099 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.236 0.764 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.250 0.750 37 H 0.250 0.750 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.097 -17.881 -2.916 22.355 hybrid contribution 1.062 -0.141 -0.337 1.123 sum -12.035 -18.022 -3.253 21.913 Atomic orbital electron populations 1.21720 0.95665 1.01778 1.01773 1.22177 0.96624 0.95823 1.03939 1.21919 0.92120 0.93713 0.87378 0.89376 1.86602 1.77335 1.58219 1.16634 1.22448 0.96795 0.94130 1.05151 1.21128 0.77638 0.98634 1.00767 1.44900 1.07947 1.06581 1.79182 1.16271 0.82046 0.84635 0.78113 1.90891 1.68149 1.32517 1.59468 1.41811 1.04504 1.07834 1.76392 1.16896 0.95488 0.87471 1.08315 1.20423 0.94643 0.97740 0.99306 1.20638 1.00999 0.94136 1.04978 1.17911 0.91567 0.93512 0.89128 1.19681 0.93430 0.94598 1.45724 0.90853 1.26708 0.97395 1.00472 0.92137 1.69941 1.08126 1.33245 1.30931 0.85376 0.78066 0.78105 0.79303 1.18421 1.18375 1.18685 1.20718 0.99616 0.97747 1.08384 1.20422 0.98014 0.93626 0.97815 0.93045 0.91955 0.93251 0.90329 0.89863 0.76378 0.88970 0.88469 0.93614 0.93294 0.75039 0.75032 0.85722 0.88222 0.89487 0.89160 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.81 71.98 0.71 -0.88 16 2 C -0.15 -1.23 5.61 30.60 0.17 -1.06 16 3 C 0.11 1.34 2.97 30.60 0.09 1.43 16 4 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 5 O -0.58 -9.25 12.41 -148.98 -1.85 -11.10 16 6 C -0.15 -1.65 5.01 30.60 0.15 -1.49 16 7 C 0.14 3.10 5.57 86.38 0.48 3.58 16 8 N -0.73 -17.04 5.56 -478.53 -2.66 -19.70 16 9 C 0.69 24.69 8.37 179.05 1.50 26.19 16 10 O -0.63 -29.49 13.96 -3.96 -0.06 -29.55 16 11 N -0.66 -22.91 5.30 -316.78 -1.68 -24.58 16 12 C 0.01 0.55 6.25 38.57 0.24 0.80 16 13 C -0.10 -4.61 9.90 22.14 0.22 -4.40 16 14 C -0.19 -9.89 8.74 22.48 0.20 -9.69 16 15 C 0.08 4.61 5.57 -21.27 -0.12 4.50 16 16 C -0.51 -28.27 8.94 23.39 0.21 -28.06 16 17 H 0.07 4.03 8.02 -2.91 -0.02 4.01 16 18 C 0.05 2.64 4.77 85.23 0.41 3.05 16 19 N -0.80 -41.02 11.78 21.82 0.26 -40.76 16 20 Si 0.97 37.99 29.66 68.60 2.03 40.02 16 21 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 22 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 C -0.24 -13.42 9.74 22.48 0.22 -13.21 16 25 C -0.08 -4.03 8.59 22.14 0.19 -3.84 16 26 H 0.05 0.64 7.82 -2.39 -0.02 0.62 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.39 3.38 9.05 -74.06 -0.67 2.71 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 1.16 8.14 -2.38 -0.02 1.15 16 35 H 0.05 1.31 7.82 -2.39 -0.02 1.29 16 36 H 0.41 6.14 8.49 -92.71 -0.79 5.35 16 37 H 0.41 10.52 8.84 -92.71 -0.82 9.70 16 38 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 39 H 0.10 5.30 6.53 -2.91 -0.02 5.28 16 40 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 41 H 0.09 4.82 8.06 -2.91 -0.02 4.79 16 42 H 0.10 5.08 6.45 -2.91 -0.02 5.06 16 Total: -1.00 -73.65 352.39 -0.51 -74.16 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: -1.23 Total: 34.60 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 4.67 Total: -23.08 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -4.08 Total: -85.05 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.90 Total: -40.65 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -73.65 -0.51 -74.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268773656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.610 kcal (2) G-P(sol) polarization free energy of solvation -73.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds