Wall clock time and date at job start Tue Mar 31 2020 07:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47468 * 2 1 4 4 H 1.09001 * 109.46986 * 305.26107 * 3 2 1 5 5 C 1.50700 * 109.47417 * 185.25634 * 3 2 1 6 6 O 1.21284 * 120.00305 * 241.65978 * 5 3 2 7 7 N 1.34778 * 119.99718 * 61.66301 * 5 3 2 8 8 C 1.39916 * 119.99957 * 175.43192 * 7 5 3 9 9 C 1.38969 * 120.04028 * 152.98870 * 8 7 5 10 10 C 1.38151 * 120.06918 * 179.97438 * 9 8 7 11 11 C 1.38168 * 120.13901 * 359.74016 * 10 9 8 12 12 C 1.38906 * 120.07255 * 0.51387 * 11 10 9 13 13 O 1.35747 * 120.03561 * 179.77034 * 12 11 10 14 14 C 1.34839 * 116.99940 * 354.18546 * 13 12 11 15 15 H 1.07997 * 119.99833 * 5.03580 * 14 13 12 16 16 C 1.38647 * 120.00105 * 185.03334 * 14 13 12 17 17 N 1.31556 * 120.00469 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99870 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46908 * 90.00535 * 18 16 14 20 20 H 1.48500 * 109.47297 * 210.00112 * 18 16 14 21 21 H 1.48496 * 109.47434 * 330.00156 * 18 16 14 22 22 C 1.38716 * 120.03848 * 332.96360 * 8 7 5 23 23 N 1.46904 * 109.47248 * 65.25385 * 3 2 1 24 24 C 1.46904 * 110.99682 * 61.48531 * 23 3 2 25 25 C 1.46903 * 110.99992 * 185.43437 * 23 3 2 26 26 H 1.09002 * 109.46608 * 64.98040 * 1 2 3 27 27 H 1.08999 * 109.47084 * 184.97491 * 1 2 3 28 28 H 1.08999 * 109.47290 * 304.97855 * 1 2 3 29 29 H 1.08999 * 109.47138 * 239.99313 * 2 1 3 30 30 H 1.09001 * 109.46781 * 119.99910 * 2 1 3 31 31 H 0.97000 * 119.99726 * 355.42982 * 7 5 3 32 32 H 1.08002 * 119.95893 * 359.97438 * 9 8 7 33 33 H 1.08009 * 119.92904 * 179.97438 * 10 9 8 34 34 H 1.08004 * 119.96429 * 180.25358 * 11 10 9 35 35 H 0.96995 * 120.00274 * 179.97438 * 17 16 14 36 36 H 1.08007 * 120.06462 * 0.04104 * 22 8 7 37 37 H 1.08997 * 109.47547 * 71.31247 * 24 23 3 38 38 H 1.08998 * 109.46737 * 191.31887 * 24 23 3 39 39 H 1.09007 * 109.46845 * 311.31208 * 24 23 3 40 40 H 1.08994 * 109.47336 * 60.00103 * 25 23 3 41 41 H 1.09008 * 109.46973 * 180.02562 * 25 23 3 42 42 H 1.09002 * 109.46925 * 300.00070 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6019 1.9827 -0.8391 5 6 3.5415 1.4444 -0.1302 6 8 4.2262 1.9153 0.7532 7 7 4.1233 0.9229 -1.2283 8 6 5.5099 1.0101 -1.3937 9 6 6.1813 0.0588 -2.1522 10 6 7.5504 0.1446 -2.3163 11 6 8.2556 1.1789 -1.7317 12 6 7.5912 2.1301 -0.9679 13 8 8.2855 3.1433 -0.3900 14 6 9.6292 3.1025 -0.4949 15 1 10.1013 2.3341 -1.0890 16 6 10.4046 4.0471 0.1598 17 7 11.7156 4.0077 0.0571 18 14 9.5879 5.3768 1.1868 19 1 9.4337 4.8982 2.5840 20 1 10.4295 6.6002 1.1726 21 1 8.2513 5.6890 0.6200 22 6 6.2160 2.0466 -0.8010 23 7 1.6568 2.0974 1.2578 24 6 2.2593 1.4157 2.4112 25 6 2.0169 3.5215 1.2409 26 1 -0.3632 0.4346 -0.9313 27 1 -0.3633 -1.0238 0.0891 28 1 -0.3634 0.5891 0.8420 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.5807 0.4870 -1.9040 32 1 5.6321 -0.7485 -2.6139 33 1 8.0699 -0.5963 -2.9060 34 1 9.3253 1.2456 -1.8652 35 1 12.2580 4.6688 0.5149 36 1 5.6966 2.7871 -0.2108 37 1 3.3315 1.6110 2.4293 38 1 1.8066 1.7877 3.3303 39 1 2.0868 0.3424 2.3297 40 1 1.5019 4.0168 0.4179 41 1 1.7224 3.9820 2.1840 42 1 3.0942 3.6222 1.1085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268791149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:01 Heat of formation + Delta-G solvation = -16.828541 kcal Electronic energy + Delta-G solvation = -23697.029281 eV Core-core repulsion = 20257.717669 eV Total energy + Delta-G solvation = -3439.311612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.86824 -39.08574 -37.48270 -36.23567 -34.52544 -33.00354 -32.36791 -29.82171 -29.03740 -27.62173 -27.30084 -25.21871 -23.48625 -22.85926 -21.71437 -20.97866 -19.83944 -18.13220 -17.79864 -17.07666 -16.38095 -15.54141 -15.35179 -15.18379 -15.00409 -14.79048 -14.30282 -13.87293 -13.83722 -13.63866 -13.38945 -12.92348 -12.65586 -12.45921 -12.29258 -12.14189 -12.01680 -11.83754 -11.78803 -11.49289 -11.26148 -11.16697 -10.99490 -10.91954 -10.83584 -10.30670 -10.09189 -9.78707 -9.36971 -8.86226 -8.21205 -7.79092 -7.31364 -6.40809 -4.07511 1.84500 2.20922 2.72142 3.11215 3.24200 3.29082 3.44115 3.76401 4.26175 4.40208 4.53581 4.60708 4.74422 4.92998 5.02072 5.12196 5.14642 5.29540 5.43669 5.52091 5.53834 5.59731 5.68198 5.70128 5.79375 5.84091 5.95293 6.03119 6.07398 6.11765 6.17936 6.24962 6.48714 6.68627 6.81130 6.83829 6.90968 7.10121 7.31524 7.56709 7.57852 7.80993 8.03349 8.20173 8.94726 9.57682 10.66661 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018657 B = 0.004355 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.396919 B = 6427.670755 C = 7686.388717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.065 3.935 4 H 0.109 0.891 5 C 0.479 3.521 6 O -0.507 6.507 7 N -0.665 5.665 8 C 0.175 3.825 9 C -0.232 4.232 10 C -0.058 4.058 11 C -0.235 4.235 12 C 0.175 3.825 13 O -0.214 6.214 14 C -0.389 4.389 15 H 0.107 0.893 16 C 0.065 3.935 17 N -0.879 5.879 18 Si 0.904 3.096 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.260 1.260 22 C -0.195 4.195 23 N -0.513 5.513 24 C -0.003 4.003 25 C 0.008 3.992 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.406 0.594 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.134 0.866 35 H 0.279 0.721 36 H 0.136 0.864 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.129 -7.321 -2.049 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.048 4.048 4 H 0.127 0.873 5 C 0.265 3.735 6 O -0.382 6.382 7 N -0.309 5.309 8 C 0.081 3.919 9 C -0.253 4.253 10 C -0.076 4.076 11 C -0.255 4.255 12 C 0.122 3.878 13 O -0.118 6.118 14 C -0.465 4.465 15 H 0.125 0.875 16 C -0.139 4.139 17 N -0.517 5.517 18 Si 0.730 3.270 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.217 4.217 23 N -0.235 5.235 24 C -0.151 4.151 25 C -0.140 4.140 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.241 0.759 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.151 0.849 35 H 0.090 0.910 36 H 0.153 0.847 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.073 -6.660 -1.127 22.129 hybrid contribution 0.633 0.314 -0.092 0.713 sum -20.440 -6.346 -1.219 21.437 Atomic orbital electron populations 1.21670 0.94120 1.01546 1.02738 1.21621 0.97695 0.93204 1.02818 1.22011 0.88976 0.98105 0.95713 0.87297 1.22236 0.91893 0.77866 0.81537 1.90671 1.64873 1.43975 1.38679 1.43658 1.06509 1.57947 1.22822 1.17248 0.81753 0.94575 0.98301 1.20298 0.94776 1.01009 1.09201 1.20555 0.93007 0.96738 0.97348 1.21298 1.01462 0.98128 1.04573 1.18869 0.90740 0.87200 0.91016 1.83581 1.21085 1.40036 1.67138 1.20784 0.76816 1.16656 1.32207 0.87528 1.24448 0.94616 0.97984 0.96818 1.69642 1.03458 1.36117 1.42497 0.86196 0.80030 0.80210 0.80602 1.19820 1.20751 1.18368 1.20171 0.91975 1.01128 1.08390 1.62518 1.56649 1.03188 1.01124 1.22779 1.00874 0.98805 0.92597 1.22572 1.01327 0.87774 1.02315 0.92847 0.92919 0.91089 0.91268 0.90854 0.75907 0.87215 0.86747 0.84855 0.91043 0.84679 0.91322 0.91765 0.91713 0.91893 0.91320 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.86 37.16 0.37 -0.62 16 2 C -0.12 -0.92 5.21 -26.73 -0.14 -1.06 16 3 C 0.06 0.66 2.16 -68.87 -0.15 0.51 16 4 H 0.11 0.94 8.13 -51.93 -0.42 0.52 16 5 C 0.48 6.65 6.31 -10.99 -0.07 6.58 16 6 O -0.51 -9.15 8.92 5.55 0.05 -9.10 16 7 N -0.66 -8.80 5.27 -9.88 -0.05 -8.85 16 8 C 0.17 3.08 6.40 -83.72 -0.54 2.54 16 9 C -0.23 -3.78 9.94 -39.34 -0.39 -4.17 16 10 C -0.06 -1.03 10.03 -39.64 -0.40 -1.43 16 11 C -0.23 -5.14 9.16 -39.36 -0.36 -5.50 16 12 C 0.17 4.23 6.64 -39.14 -0.26 3.97 16 13 O -0.21 -5.89 8.58 0.03 0.00 -5.89 16 14 C -0.39 -11.23 9.95 30.88 0.31 -10.92 16 15 H 0.11 3.11 5.43 -52.49 -0.29 2.82 16 16 C 0.06 1.85 5.49 -17.52 -0.10 1.76 16 17 N -0.88 -25.77 13.96 55.48 0.77 -24.99 16 18 Si 0.90 22.45 28.62 -169.99 -4.86 17.58 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.26 -6.54 7.11 56.52 0.40 -6.13 16 22 C -0.20 -4.23 8.65 -39.21 -0.34 -4.57 16 23 N -0.51 -5.71 4.39 -244.58 -1.07 -6.78 16 24 C 0.00 -0.04 8.92 60.07 0.54 0.50 16 25 C 0.01 0.09 9.28 60.07 0.56 0.65 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.56 7.63 -51.93 -0.40 0.17 16 29 H 0.07 0.45 7.42 -51.93 -0.39 0.06 16 30 H 0.07 0.66 5.97 -51.93 -0.31 0.35 16 31 H 0.41 3.74 8.12 -40.82 -0.33 3.41 16 32 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.13 3.04 5.63 -52.48 -0.30 2.75 16 35 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.14 3.08 5.91 -52.48 -0.31 2.77 16 37 H 0.07 1.03 5.52 -51.93 -0.29 0.74 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.69 5.74 -51.93 -0.30 0.39 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 42 H 0.05 0.80 5.89 -51.93 -0.31 0.50 16 LS Contribution 335.60 15.07 5.06 5.06 Total: -1.00 -32.11 335.60 -6.80 -38.91 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.72 Total: 5.85 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -0.97 Total: -11.77 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: -0.35 Total: -40.63 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.05 Total: -15.00 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.86 Total: 17.58 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.11 -6.80 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268791149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.077 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds