Wall clock time and date at job start Tue Mar 31 2020 07:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47468 * 2 1 4 4 H 1.09001 * 109.46986 * 305.26107 * 3 2 1 5 5 C 1.50700 * 109.47417 * 185.25634 * 3 2 1 6 6 O 1.21284 * 120.00305 * 241.65978 * 5 3 2 7 7 N 1.34778 * 119.99718 * 61.66301 * 5 3 2 8 8 C 1.39916 * 119.99957 * 175.43192 * 7 5 3 9 9 C 1.38969 * 120.04028 * 152.98870 * 8 7 5 10 10 C 1.38151 * 120.06918 * 179.97438 * 9 8 7 11 11 C 1.38168 * 120.13901 * 359.74016 * 10 9 8 12 12 C 1.38906 * 120.07255 * 0.51387 * 11 10 9 13 13 O 1.35747 * 120.03561 * 179.77034 * 12 11 10 14 14 C 1.34839 * 116.99940 * 354.18546 * 13 12 11 15 15 H 1.07997 * 119.99833 * 5.03580 * 14 13 12 16 16 C 1.38647 * 120.00105 * 185.03334 * 14 13 12 17 17 N 1.31556 * 120.00469 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99870 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46908 * 90.00535 * 18 16 14 20 20 H 1.48500 * 109.47297 * 210.00112 * 18 16 14 21 21 H 1.48496 * 109.47434 * 330.00156 * 18 16 14 22 22 C 1.38716 * 120.03848 * 332.96360 * 8 7 5 23 23 N 1.46904 * 109.47248 * 65.25385 * 3 2 1 24 24 C 1.46904 * 110.99682 * 61.48531 * 23 3 2 25 25 C 1.46903 * 110.99992 * 185.43437 * 23 3 2 26 26 H 1.09002 * 109.46608 * 64.98040 * 1 2 3 27 27 H 1.08999 * 109.47084 * 184.97491 * 1 2 3 28 28 H 1.08999 * 109.47290 * 304.97855 * 1 2 3 29 29 H 1.08999 * 109.47138 * 239.99313 * 2 1 3 30 30 H 1.09001 * 109.46781 * 119.99910 * 2 1 3 31 31 H 0.97000 * 119.99726 * 355.42982 * 7 5 3 32 32 H 1.08002 * 119.95893 * 359.97438 * 9 8 7 33 33 H 1.08009 * 119.92904 * 179.97438 * 10 9 8 34 34 H 1.08004 * 119.96429 * 180.25358 * 11 10 9 35 35 H 0.96995 * 120.00274 * 179.97438 * 17 16 14 36 36 H 1.08007 * 120.06462 * 0.04104 * 22 8 7 37 37 H 1.08997 * 109.47547 * 71.31247 * 24 23 3 38 38 H 1.08998 * 109.46737 * 191.31887 * 24 23 3 39 39 H 1.09007 * 109.46845 * 311.31208 * 24 23 3 40 40 H 1.08994 * 109.47336 * 60.00103 * 25 23 3 41 41 H 1.09008 * 109.46973 * 180.02562 * 25 23 3 42 42 H 1.09002 * 109.46925 * 300.00070 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6019 1.9827 -0.8391 5 6 3.5415 1.4444 -0.1302 6 8 4.2262 1.9153 0.7532 7 7 4.1233 0.9229 -1.2283 8 6 5.5099 1.0101 -1.3937 9 6 6.1813 0.0588 -2.1522 10 6 7.5504 0.1446 -2.3163 11 6 8.2556 1.1789 -1.7317 12 6 7.5912 2.1301 -0.9679 13 8 8.2855 3.1433 -0.3900 14 6 9.6292 3.1025 -0.4949 15 1 10.1013 2.3341 -1.0890 16 6 10.4046 4.0471 0.1598 17 7 11.7156 4.0077 0.0571 18 14 9.5879 5.3768 1.1868 19 1 9.4337 4.8982 2.5840 20 1 10.4295 6.6002 1.1726 21 1 8.2513 5.6890 0.6200 22 6 6.2160 2.0466 -0.8010 23 7 1.6568 2.0974 1.2578 24 6 2.2593 1.4157 2.4112 25 6 2.0169 3.5215 1.2409 26 1 -0.3632 0.4346 -0.9313 27 1 -0.3633 -1.0238 0.0891 28 1 -0.3634 0.5891 0.8420 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.5807 0.4870 -1.9040 32 1 5.6321 -0.7485 -2.6139 33 1 8.0699 -0.5963 -2.9060 34 1 9.3253 1.2456 -1.8652 35 1 12.2580 4.6688 0.5149 36 1 5.6966 2.7871 -0.2108 37 1 3.3315 1.6110 2.4293 38 1 1.8066 1.7877 3.3303 39 1 2.0868 0.3424 2.3297 40 1 1.5019 4.0168 0.4179 41 1 1.7224 3.9820 2.1840 42 1 3.0942 3.6222 1.1085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268791149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:01 Heat of formation + Delta-G solvation = -39.767964 kcal Electronic energy + Delta-G solvation = -23698.024009 eV Core-core repulsion = 20257.717669 eV Total energy + Delta-G solvation = -3440.306340 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04413 -40.73258 -38.89098 -37.51913 -35.80492 -34.48942 -33.81423 -31.39176 -30.46276 -28.60809 -28.25559 -27.25025 -24.56132 -23.97233 -23.09032 -22.36231 -20.91367 -19.91783 -19.46429 -18.31372 -17.53254 -16.96309 -16.78219 -16.42796 -16.34909 -15.88877 -15.82500 -15.65565 -15.42500 -14.76051 -14.38267 -14.31968 -14.23874 -14.08913 -13.56053 -13.26716 -13.08404 -12.95724 -12.81440 -12.75849 -12.64458 -12.53328 -12.44908 -12.08520 -11.85858 -11.62261 -11.53569 -11.36293 -11.02860 -10.90705 -9.43867 -9.21420 -8.91574 -8.54860 -6.26991 0.34622 0.61636 1.23811 1.28029 1.44765 1.53228 1.97439 2.22853 2.72713 2.87231 3.03976 3.09907 3.62828 3.86350 4.04377 4.08661 4.18855 4.32434 4.36246 4.50318 4.58676 4.61313 4.61762 4.67000 4.69383 4.76479 4.84490 4.95974 5.05658 5.12994 5.21477 5.30403 5.31360 5.33676 5.42570 5.58542 5.65422 5.75240 5.85381 5.88027 5.89692 6.19490 6.43983 6.80065 7.12360 7.56294 8.56764 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018657 B = 0.004355 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.396919 B = 6427.670755 C = 7686.388717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.071 3.929 4 H 0.134 0.866 5 C 0.474 3.526 6 O -0.550 6.550 7 N -0.649 5.649 8 C 0.185 3.815 9 C -0.199 4.199 10 C -0.050 4.050 11 C -0.253 4.253 12 C 0.135 3.865 13 O -0.250 6.250 14 C -0.399 4.399 15 H 0.087 0.913 16 C 0.015 3.985 17 N -0.919 5.919 18 Si 0.964 3.036 19 H -0.270 1.270 20 H -0.259 1.259 21 H -0.272 1.272 22 C -0.212 4.212 23 N -0.505 5.505 24 C 0.001 3.999 25 C 0.010 3.990 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.430 0.570 32 H 0.167 0.833 33 H 0.155 0.845 34 H 0.112 0.888 35 H 0.286 0.714 36 H 0.115 0.885 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.820 -9.473 -3.501 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C -0.041 4.041 4 H 0.151 0.849 5 C 0.262 3.738 6 O -0.427 6.427 7 N -0.296 5.296 8 C 0.090 3.910 9 C -0.219 4.219 10 C -0.069 4.069 11 C -0.273 4.273 12 C 0.085 3.915 13 O -0.157 6.157 14 C -0.475 4.475 15 H 0.105 0.895 16 C -0.184 4.184 17 N -0.560 5.560 18 Si 0.787 3.213 19 H -0.195 1.195 20 H -0.183 1.183 21 H -0.197 1.197 22 C -0.233 4.233 23 N -0.227 5.227 24 C -0.147 4.147 25 C -0.138 4.138 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.270 0.730 32 H 0.184 0.816 33 H 0.173 0.827 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -24.830 -8.857 -2.617 26.492 hybrid contribution 1.510 0.726 0.237 1.692 sum -23.320 -8.130 -2.380 24.812 Atomic orbital electron populations 1.21628 0.92943 1.02156 1.02855 1.21666 0.98543 0.91251 1.03483 1.22253 0.85895 1.00078 0.95919 0.84853 1.23119 0.93446 0.76451 0.80763 1.90701 1.66202 1.45473 1.40348 1.43599 1.04754 1.57840 1.23456 1.17388 0.83822 0.93075 0.96727 1.20903 0.94196 1.00635 1.06216 1.21019 0.93943 0.95701 0.96230 1.21344 1.00844 0.99514 1.05627 1.19393 0.91789 0.87894 0.92379 1.83527 1.20136 1.42391 1.69668 1.20765 0.77954 1.16527 1.32269 0.89521 1.25165 0.95178 1.00000 0.98028 1.69705 1.04398 1.37593 1.44274 0.85330 0.78618 0.78516 0.78881 1.19511 1.18344 1.19698 1.20226 0.91171 1.02530 1.09404 1.62582 1.55776 1.02836 1.01486 1.22714 0.98660 0.99809 0.93477 1.22553 0.99202 0.88586 1.03458 0.91607 0.91843 0.92374 0.88896 0.91929 0.72958 0.81576 0.82721 0.87021 0.90472 0.86688 0.94835 0.90919 0.90374 0.90043 0.90744 0.96216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.86 71.98 0.71 -0.62 16 2 C -0.11 -1.33 5.21 30.59 0.16 -1.17 16 3 C 0.07 1.23 2.16 44.17 0.10 1.33 16 4 H 0.13 1.73 8.13 -2.39 -0.02 1.71 16 5 C 0.47 12.32 6.31 87.66 0.55 12.87 16 6 O -0.55 -20.16 8.92 -3.04 -0.03 -20.19 16 7 N -0.65 -14.91 5.27 -303.56 -1.60 -16.51 16 8 C 0.19 6.05 6.40 38.14 0.24 6.29 16 9 C -0.20 -5.53 9.94 22.42 0.22 -5.31 16 10 C -0.05 -1.66 10.03 22.23 0.22 -1.43 16 11 C -0.25 -11.35 9.16 22.41 0.21 -11.14 16 12 C 0.14 6.84 6.64 22.56 0.15 6.99 16 13 O -0.25 -14.69 8.58 -22.80 -0.20 -14.89 16 14 C -0.40 -24.59 9.95 67.92 0.68 -23.91 16 15 H 0.09 5.48 5.43 -2.91 -0.02 5.47 16 16 C 0.02 0.91 5.49 84.83 0.47 1.37 16 17 N -0.92 -56.26 13.96 21.61 0.30 -55.96 16 18 Si 0.96 48.41 28.62 68.60 1.96 50.38 16 19 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 20 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.27 -14.04 7.11 99.48 0.71 -13.33 16 22 C -0.21 -9.36 8.65 22.51 0.19 -9.16 16 23 N -0.51 -10.37 4.39 -927.70 -4.07 -14.44 16 24 C 0.00 0.03 8.92 127.69 1.14 1.17 16 25 C 0.01 0.23 9.28 127.69 1.18 1.42 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.73 7.63 -2.39 -0.02 0.71 16 29 H 0.09 0.69 7.42 -2.39 -0.02 0.67 16 30 H 0.06 0.91 5.97 -2.39 -0.01 0.90 16 31 H 0.43 5.54 8.12 -92.71 -0.75 4.79 16 32 H 0.17 2.91 8.06 -2.91 -0.02 2.88 16 33 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 34 H 0.11 5.43 5.63 -2.91 -0.02 5.42 16 35 H 0.29 16.00 8.31 -92.71 -0.77 15.23 16 36 H 0.12 5.53 5.91 -2.91 -0.02 5.52 16 37 H 0.03 1.03 5.52 -2.39 -0.01 1.02 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.54 5.74 -2.38 -0.01 1.53 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.02 0.59 5.89 -2.39 -0.01 0.58 16 Total: -1.00 -77.15 335.60 2.89 -74.26 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.29 Total: 18.67 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 6.22 Total: -21.31 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -5.37 Total: -86.91 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.22 Total: -35.08 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 1.96 Total: 50.38 kcal Total: -77.15 2.89 -74.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268791149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.488 kcal (2) G-P(sol) polarization free energy of solvation -77.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds