Wall clock time and date at job start Tue Mar 31 2020 07:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47096 * 2 1 4 4 H 1.09001 * 109.47540 * 179.32197 * 3 2 1 5 5 C 1.50706 * 109.47461 * 299.32327 * 3 2 1 6 6 O 1.21286 * 119.99785 * 99.99763 * 5 3 2 7 7 N 1.34776 * 119.99869 * 280.00631 * 5 3 2 8 8 C 1.39917 * 119.99988 * 174.75491 * 7 5 3 9 9 C 1.38969 * 120.03791 * 148.21577 * 8 7 5 10 10 C 1.38155 * 120.06558 * 179.97438 * 9 8 7 11 11 C 1.38169 * 120.14285 * 359.73831 * 10 9 8 12 12 C 1.38906 * 120.06649 * 0.51049 * 11 10 9 13 13 O 1.35756 * 120.03121 * 179.76364 * 12 11 10 14 14 C 1.34823 * 116.99857 * 353.64794 * 13 12 11 15 15 H 1.08001 * 120.00718 * 5.04005 * 14 13 12 16 16 C 1.38659 * 119.99714 * 185.03852 * 14 13 12 17 17 N 1.31554 * 120.00060 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99823 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47022 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47002 * 119.99968 * 18 16 14 21 21 H 1.48497 * 109.47480 * 239.99968 * 18 16 14 22 22 C 1.38712 * 120.03614 * 328.18828 * 8 7 5 23 23 N 1.46897 * 109.47353 * 59.32252 * 3 2 1 24 24 C 1.46898 * 111.00152 * 52.18948 * 23 3 2 25 25 C 1.46905 * 111.00333 * 176.14052 * 23 3 2 26 26 H 1.09002 * 109.46665 * 305.59252 * 1 2 3 27 27 H 1.09001 * 109.47060 * 65.58892 * 1 2 3 28 28 H 1.08996 * 109.47065 * 185.59275 * 1 2 3 29 29 H 1.08994 * 109.46891 * 239.99962 * 2 1 3 30 30 H 1.09002 * 109.46848 * 119.99661 * 2 1 3 31 31 H 0.97001 * 120.00180 * 354.74767 * 7 5 3 32 32 H 1.07999 * 119.96365 * 359.95232 * 9 8 7 33 33 H 1.08008 * 119.92908 * 179.97438 * 10 9 8 34 34 H 1.07999 * 119.96470 * 180.26028 * 11 10 9 35 35 H 0.96996 * 119.99985 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.07216 * 0.02562 * 22 8 7 37 37 H 1.09006 * 109.47295 * 57.92514 * 24 23 3 38 38 H 1.08997 * 109.47482 * 177.92249 * 24 23 3 39 39 H 1.08996 * 109.47135 * 297.92976 * 24 23 3 40 40 H 1.09010 * 109.46744 * 56.04836 * 25 23 3 41 41 H 1.09002 * 109.47334 * 176.04592 * 25 23 3 42 42 H 1.08993 * 109.47241 * 296.05125 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 0.0122 5 6 1.5515 2.1481 -1.2388 6 8 0.5899 2.8848 -1.1776 7 7 2.1829 1.9603 -2.4146 8 6 1.6657 2.5269 -3.5847 9 6 2.5238 2.9276 -4.6017 10 6 2.0137 3.4866 -5.7576 11 6 0.6493 3.6441 -5.9086 12 6 -0.2133 3.2503 -4.8936 13 8 -1.5534 3.4097 -5.0408 14 6 -1.9740 4.0748 -6.1355 15 1 -1.2623 4.3817 -6.8877 16 6 -3.3204 4.3647 -6.2958 17 7 -4.1874 3.9904 -5.3799 18 14 -3.9032 5.2868 -7.8123 19 1 -2.7400 5.5915 -8.6837 20 1 -4.8742 4.4474 -8.5592 21 1 -4.5587 6.5538 -7.3999 22 6 0.2959 2.6886 -3.7311 23 7 1.5371 2.1397 1.1911 24 6 1.8363 1.3793 2.4119 25 6 2.0811 3.5018 1.2728 26 1 -0.3633 0.5981 0.8357 27 1 -0.3633 0.4247 -0.9358 28 1 -0.3633 -1.0227 0.1001 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.9960 1.4325 -2.4496 32 1 3.5905 2.8022 -4.4882 33 1 2.6826 3.7976 -6.5465 34 1 0.2535 4.0775 -6.8152 35 1 -5.1293 4.1935 -5.4919 36 1 -0.3731 2.3780 -2.9423 37 1 2.9126 1.2248 2.4890 38 1 1.4859 1.9353 3.2814 39 1 1.3327 0.4135 2.3709 40 1 1.8452 4.0428 0.3563 41 1 1.6388 4.0193 2.1242 42 1 3.1627 3.4542 1.3985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268791150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:04 Heat of formation + Delta-G solvation = -20.144642 kcal Electronic energy + Delta-G solvation = -23603.091888 eV Core-core repulsion = 20163.636479 eV Total energy + Delta-G solvation = -3439.455409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.49783 -38.85400 -37.47991 -36.20738 -34.08335 -33.02353 -32.20163 -29.66389 -28.78730 -27.73066 -27.08786 -25.25233 -23.37635 -22.92373 -21.67615 -20.93207 -19.47726 -18.19209 -17.36149 -16.86738 -16.29997 -15.75590 -15.25803 -15.03436 -14.65461 -14.56857 -14.13465 -13.98744 -13.62602 -13.43317 -13.16087 -13.04608 -12.69170 -12.47778 -12.41201 -12.16751 -11.81161 -11.65597 -11.59066 -11.38485 -11.16107 -11.07784 -11.00882 -10.92637 -10.72696 -10.40616 -9.72460 -9.55816 -9.11609 -8.78194 -8.44581 -7.63107 -7.14522 -6.38147 -3.97393 2.03685 2.37440 2.92901 3.11274 3.16684 3.19059 3.23630 3.82687 4.02094 4.54032 4.64326 4.77462 4.84093 5.01282 5.15391 5.16196 5.22053 5.35810 5.39590 5.39965 5.51500 5.61654 5.64826 5.73800 5.85039 5.93045 5.95642 6.11951 6.13310 6.25915 6.40825 6.49975 6.67356 6.77444 6.86290 6.95409 7.06990 7.11990 7.38323 7.51634 7.76139 7.83676 8.06619 8.44642 9.06731 9.78311 10.79819 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020665 B = 0.003816 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.616021 B = 7335.604979 C = 8025.768324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C 0.070 3.930 4 H 0.059 0.941 5 C 0.510 3.490 6 O -0.484 6.484 7 N -0.673 5.673 8 C 0.180 3.820 9 C -0.239 4.239 10 C -0.058 4.058 11 C -0.247 4.247 12 C 0.168 3.832 13 O -0.174 6.174 14 C -0.392 4.392 15 H 0.093 0.907 16 C 0.039 3.961 17 N -0.860 5.860 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.189 4.189 23 N -0.520 5.520 24 C 0.022 3.978 25 C 0.021 3.979 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.403 0.597 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.269 0.731 36 H 0.131 0.869 37 H 0.024 0.976 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.303 -6.662 10.365 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.042 4.042 4 H 0.076 0.924 5 C 0.295 3.705 6 O -0.354 6.354 7 N -0.318 5.318 8 C 0.087 3.913 9 C -0.260 4.260 10 C -0.077 4.077 11 C -0.267 4.267 12 C 0.114 3.886 13 O -0.077 6.077 14 C -0.468 4.468 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.210 4.210 23 N -0.245 5.245 24 C -0.126 4.126 25 C -0.127 4.127 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.237 0.763 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.145 0.855 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 13.603 -6.155 10.616 18.320 hybrid contribution 1.159 0.201 -0.761 1.402 sum 14.763 -5.954 9.855 18.722 Atomic orbital electron populations 1.21739 0.93868 1.01274 1.03958 1.21597 0.98410 0.92512 1.02642 1.21649 0.97499 0.95130 0.89966 0.92359 1.20455 0.84082 0.82008 0.83945 1.90804 1.25294 1.34582 1.84764 1.43458 1.28890 1.53217 1.06281 1.17169 0.91792 0.96855 0.85504 1.20239 0.97540 1.11672 0.96535 1.20493 0.94542 0.96624 0.96005 1.21169 0.93323 1.10821 1.01349 1.19120 0.85058 0.92274 0.92171 1.83990 1.15594 1.65000 1.43100 1.21391 0.92975 1.34858 0.97562 0.88970 1.25301 0.94825 0.97444 0.98993 1.70064 1.02739 1.43392 1.33270 0.85648 0.79074 0.78877 0.79808 1.19105 1.20187 1.20156 1.20058 0.93212 1.09621 0.98137 1.61638 1.59350 1.02518 1.00968 1.22487 0.98712 0.99375 0.91978 1.22482 0.96369 0.89763 1.04059 0.90864 0.92237 0.93047 0.91056 0.90738 0.76256 0.87502 0.87115 0.85497 0.92096 0.85107 0.95766 0.91046 0.90640 0.90344 0.90950 0.96053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.27 37.16 0.34 -1.55 16 2 C -0.11 -1.13 5.14 -26.73 -0.14 -1.27 16 3 C 0.07 0.80 2.18 -68.87 -0.15 0.65 16 4 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 5 C 0.51 7.97 4.89 -10.98 -0.05 7.92 16 6 O -0.48 -9.95 12.80 5.55 0.07 -9.88 16 7 N -0.67 -9.85 5.35 -9.88 -0.05 -9.90 16 8 C 0.18 3.40 6.31 -83.72 -0.53 2.87 16 9 C -0.24 -4.13 9.96 -39.34 -0.39 -4.53 16 10 C -0.06 -1.07 10.03 -39.64 -0.40 -1.47 16 11 C -0.25 -5.52 9.16 -39.36 -0.36 -5.88 16 12 C 0.17 4.31 6.64 -39.13 -0.26 4.05 16 13 O -0.17 -5.21 9.76 0.05 0.00 -5.21 16 14 C -0.39 -11.29 9.49 30.89 0.29 -11.00 16 15 H 0.09 2.45 5.21 -52.49 -0.27 2.17 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 17 N -0.86 -26.05 13.67 55.48 0.76 -25.29 16 18 Si 0.94 21.02 29.55 -169.99 -5.02 15.99 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 C -0.19 -4.41 8.61 -39.21 -0.34 -4.74 16 23 N -0.52 -6.24 3.72 -244.58 -0.91 -7.15 16 24 C 0.02 0.19 8.73 60.06 0.52 0.72 16 25 C 0.02 0.25 9.27 60.07 0.56 0.81 16 26 H 0.07 0.98 6.99 -51.93 -0.36 0.62 16 27 H 0.06 0.94 7.35 -51.93 -0.38 0.56 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.58 6.41 -51.93 -0.33 0.25 16 31 H 0.40 4.20 8.81 -40.82 -0.36 3.84 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 34 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.13 3.28 6.30 -52.49 -0.33 2.95 16 37 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 39 H 0.07 0.60 5.93 -51.93 -0.31 0.30 16 40 H 0.08 1.15 6.34 -51.92 -0.33 0.82 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 341.69 15.07 5.15 5.15 Total: -1.00 -34.40 341.69 -6.91 -41.31 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.91 Total: 7.41 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.99 Total: -12.43 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: -0.20 Total: -42.34 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.07 Total: -15.09 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.40 -6.91 -41.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268791150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.164 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds