Wall clock time and date at job start Tue Mar 31 2020 07:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47096 * 2 1 4 4 H 1.09001 * 109.47540 * 179.32197 * 3 2 1 5 5 C 1.50706 * 109.47461 * 299.32327 * 3 2 1 6 6 O 1.21286 * 119.99785 * 99.99763 * 5 3 2 7 7 N 1.34776 * 119.99869 * 280.00631 * 5 3 2 8 8 C 1.39917 * 119.99988 * 174.75491 * 7 5 3 9 9 C 1.38969 * 120.03791 * 148.21577 * 8 7 5 10 10 C 1.38155 * 120.06558 * 179.97438 * 9 8 7 11 11 C 1.38169 * 120.14285 * 359.73831 * 10 9 8 12 12 C 1.38906 * 120.06649 * 0.51049 * 11 10 9 13 13 O 1.35756 * 120.03121 * 179.76364 * 12 11 10 14 14 C 1.34823 * 116.99857 * 353.64794 * 13 12 11 15 15 H 1.08001 * 120.00718 * 5.04005 * 14 13 12 16 16 C 1.38659 * 119.99714 * 185.03852 * 14 13 12 17 17 N 1.31554 * 120.00060 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99823 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47022 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47002 * 119.99968 * 18 16 14 21 21 H 1.48497 * 109.47480 * 239.99968 * 18 16 14 22 22 C 1.38712 * 120.03614 * 328.18828 * 8 7 5 23 23 N 1.46897 * 109.47353 * 59.32252 * 3 2 1 24 24 C 1.46898 * 111.00152 * 52.18948 * 23 3 2 25 25 C 1.46905 * 111.00333 * 176.14052 * 23 3 2 26 26 H 1.09002 * 109.46665 * 305.59252 * 1 2 3 27 27 H 1.09001 * 109.47060 * 65.58892 * 1 2 3 28 28 H 1.08996 * 109.47065 * 185.59275 * 1 2 3 29 29 H 1.08994 * 109.46891 * 239.99962 * 2 1 3 30 30 H 1.09002 * 109.46848 * 119.99661 * 2 1 3 31 31 H 0.97001 * 120.00180 * 354.74767 * 7 5 3 32 32 H 1.07999 * 119.96365 * 359.95232 * 9 8 7 33 33 H 1.08008 * 119.92908 * 179.97438 * 10 9 8 34 34 H 1.07999 * 119.96470 * 180.26028 * 11 10 9 35 35 H 0.96996 * 119.99985 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.07216 * 0.02562 * 22 8 7 37 37 H 1.09006 * 109.47295 * 57.92514 * 24 23 3 38 38 H 1.08997 * 109.47482 * 177.92249 * 24 23 3 39 39 H 1.08996 * 109.47135 * 297.92976 * 24 23 3 40 40 H 1.09010 * 109.46744 * 56.04836 * 25 23 3 41 41 H 1.09002 * 109.47334 * 176.04592 * 25 23 3 42 42 H 1.08993 * 109.47241 * 296.05125 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 0.0122 5 6 1.5515 2.1481 -1.2388 6 8 0.5899 2.8848 -1.1776 7 7 2.1829 1.9603 -2.4146 8 6 1.6657 2.5269 -3.5847 9 6 2.5238 2.9276 -4.6017 10 6 2.0137 3.4866 -5.7576 11 6 0.6493 3.6441 -5.9086 12 6 -0.2133 3.2503 -4.8936 13 8 -1.5534 3.4097 -5.0408 14 6 -1.9740 4.0748 -6.1355 15 1 -1.2623 4.3817 -6.8877 16 6 -3.3204 4.3647 -6.2958 17 7 -4.1874 3.9904 -5.3799 18 14 -3.9032 5.2868 -7.8123 19 1 -2.7400 5.5915 -8.6837 20 1 -4.8742 4.4474 -8.5592 21 1 -4.5587 6.5538 -7.3999 22 6 0.2959 2.6886 -3.7311 23 7 1.5371 2.1397 1.1911 24 6 1.8363 1.3793 2.4119 25 6 2.0811 3.5018 1.2728 26 1 -0.3633 0.5981 0.8357 27 1 -0.3633 0.4247 -0.9358 28 1 -0.3633 -1.0227 0.1001 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.9960 1.4325 -2.4496 32 1 3.5905 2.8022 -4.4882 33 1 2.6826 3.7976 -6.5465 34 1 0.2535 4.0775 -6.8152 35 1 -5.1293 4.1935 -5.4919 36 1 -0.3731 2.3780 -2.9423 37 1 2.9126 1.2248 2.4890 38 1 1.4859 1.9353 3.2814 39 1 1.3327 0.4135 2.3709 40 1 1.8452 4.0428 0.3563 41 1 1.6388 4.0193 2.1242 42 1 3.1627 3.4542 1.3985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268791150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:04 Heat of formation + Delta-G solvation = -45.915043 kcal Electronic energy + Delta-G solvation = -23604.209376 eV Core-core repulsion = 20163.636479 eV Total energy + Delta-G solvation = -3440.572897 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.79914 -40.52831 -38.81556 -37.71226 -35.55167 -34.28041 -33.94577 -31.29334 -30.32899 -28.70468 -28.10101 -27.31220 -24.43107 -24.15573 -23.26199 -22.40655 -20.64928 -19.96316 -19.08327 -18.16207 -17.50736 -16.96375 -16.71653 -16.56038 -16.07876 -15.95019 -15.68910 -15.43508 -15.30133 -14.63513 -14.39509 -14.29895 -14.01923 -13.97352 -13.59291 -13.22573 -13.19558 -13.09147 -12.94684 -12.74200 -12.57292 -12.37850 -12.32424 -12.08834 -12.02438 -11.86445 -11.36903 -11.24657 -10.77458 -10.60562 -9.33751 -9.23807 -8.85776 -8.46816 -6.16747 0.42417 0.70176 1.33778 1.43065 1.53770 1.65684 1.93446 2.18803 2.83414 2.95655 3.17569 3.39749 3.70613 3.88050 3.98682 4.13691 4.21884 4.33312 4.36358 4.41328 4.41867 4.56444 4.62403 4.70092 4.71008 4.74555 4.84672 4.96694 4.99512 5.05327 5.09350 5.11142 5.15005 5.40054 5.45785 5.47747 5.63470 5.74256 5.90849 6.03171 6.08894 6.21455 6.53906 6.96702 7.24689 7.79799 8.77316 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020665 B = 0.003816 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.616021 B = 7335.604979 C = 8025.768324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C 0.078 3.922 4 H 0.099 0.901 5 C 0.505 3.495 6 O -0.542 6.542 7 N -0.657 5.657 8 C 0.189 3.811 9 C -0.207 4.207 10 C -0.048 4.048 11 C -0.257 4.257 12 C 0.127 3.873 13 O -0.237 6.237 14 C -0.414 4.414 15 H 0.107 0.893 16 C -0.028 4.028 17 N -0.925 5.925 18 Si 1.024 2.976 19 H -0.247 1.247 20 H -0.267 1.267 21 H -0.270 1.270 22 C -0.215 4.215 23 N -0.551 5.551 24 C 0.024 3.976 25 C 0.026 3.974 26 H 0.059 0.941 27 H 0.012 0.988 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.429 0.571 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.122 0.878 35 H 0.272 0.728 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.118 -7.498 10.147 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.034 4.034 4 H 0.116 0.884 5 C 0.293 3.707 6 O -0.416 6.416 7 N -0.305 5.305 8 C 0.094 3.906 9 C -0.227 4.227 10 C -0.066 4.066 11 C -0.277 4.277 12 C 0.076 3.924 13 O -0.143 6.143 14 C -0.490 4.490 15 H 0.124 0.876 16 C -0.225 4.225 17 N -0.563 5.563 18 Si 0.843 3.157 19 H -0.170 1.170 20 H -0.192 1.192 21 H -0.195 1.195 22 C -0.237 4.237 23 N -0.277 5.277 24 C -0.123 4.123 25 C -0.122 4.122 26 H 0.078 0.922 27 H 0.031 0.969 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.269 0.731 32 H 0.182 0.818 33 H 0.178 0.822 34 H 0.140 0.860 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.531 -7.041 10.424 22.397 hybrid contribution -0.028 0.356 -0.513 0.625 sum 18.503 -6.685 9.910 22.029 Atomic orbital electron populations 1.21691 0.96551 1.01573 1.00814 1.21664 0.95833 0.91936 1.05141 1.21700 0.99415 0.94853 0.87415 0.88404 1.21458 0.82937 0.81012 0.85284 1.90800 1.27893 1.37235 1.85677 1.43393 1.29523 1.52876 1.04755 1.17321 0.90188 0.95668 0.87406 1.20880 0.99926 1.07472 0.94463 1.21039 0.93109 0.94872 0.97586 1.21310 0.95018 1.11085 1.00305 1.19675 0.84458 0.94119 0.94142 1.83957 1.18248 1.67645 1.44468 1.21960 0.93920 1.35209 0.97924 0.87626 1.26728 0.94534 0.98296 1.02895 1.70234 1.03234 1.46364 1.36465 0.84463 0.78974 0.77167 0.75115 1.16964 1.19173 1.19502 1.20062 0.95265 1.11316 0.97013 1.61555 1.60723 1.03014 1.02381 1.22536 1.00238 0.99157 0.90364 1.22369 0.97886 0.89674 1.02241 0.92207 0.96869 0.91308 0.89483 0.87152 0.73145 0.81806 0.82249 0.85984 0.91907 0.88645 0.93494 0.90793 0.89967 0.94081 0.90628 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.27 71.98 0.67 -3.10 16 2 C -0.11 -1.85 5.14 30.59 0.16 -1.69 16 3 C 0.08 1.59 2.18 44.17 0.10 1.69 16 4 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 5 C 0.51 15.64 4.89 87.66 0.43 16.07 16 6 O -0.54 -23.77 12.80 -3.05 -0.04 -23.81 16 7 N -0.66 -17.83 5.35 -303.55 -1.62 -19.45 16 8 C 0.19 6.91 6.31 38.14 0.24 7.15 16 9 C -0.21 -6.22 9.96 22.43 0.22 -6.00 16 10 C -0.05 -1.59 10.03 22.23 0.22 -1.37 16 11 C -0.26 -11.59 9.16 22.41 0.21 -11.38 16 12 C 0.13 6.92 6.64 22.56 0.15 7.07 16 13 O -0.24 -15.49 9.76 -22.74 -0.22 -15.71 16 14 C -0.41 -25.49 9.49 67.92 0.64 -24.85 16 15 H 0.11 5.88 5.21 -2.91 -0.02 5.86 16 16 C -0.03 -1.66 5.49 84.83 0.47 -1.19 16 17 N -0.92 -60.24 13.67 21.61 0.30 -59.95 16 18 Si 1.02 44.73 29.55 68.60 2.03 46.75 16 19 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 22 C -0.21 -10.65 8.61 22.51 0.19 -10.46 16 23 N -0.55 -12.43 3.72 -927.72 -3.45 -15.87 16 24 C 0.02 0.34 8.73 127.69 1.11 1.46 16 25 C 0.03 0.59 9.27 127.69 1.18 1.78 16 26 H 0.06 1.65 6.99 -2.39 -0.02 1.63 16 27 H 0.01 0.42 7.35 -2.39 -0.02 0.41 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.11 1.19 6.41 -2.39 -0.02 1.17 16 31 H 0.43 6.97 8.81 -92.71 -0.82 6.15 16 32 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 33 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 34 H 0.12 5.51 5.64 -2.91 -0.02 5.49 16 35 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 36 H 0.10 5.35 6.30 -2.91 -0.02 5.33 16 37 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 38 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 39 H 0.08 1.05 5.93 -2.39 -0.01 1.04 16 40 H 0.04 1.23 6.34 -2.38 -0.02 1.21 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -87.78 341.69 3.21 -84.57 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.22 Total: 28.29 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 5.99 Total: -24.83 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -4.77 Total: -95.27 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.26 Total: -39.52 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -87.78 3.21 -84.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268791150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.658 kcal (2) G-P(sol) polarization free energy of solvation -87.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds