Wall clock time and date at job start Tue Mar 31 2020 07:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.46917 * 2 1 4 4 H 1.09005 * 109.47084 * 304.99886 * 3 2 1 5 5 C 1.53001 * 109.47123 * 184.99963 * 3 2 1 6 6 O 1.42891 * 109.47345 * 64.99929 * 3 2 1 7 7 C 1.35686 * 117.00123 * 209.99954 * 6 3 2 8 8 C 1.38898 * 119.62368 * 180.25221 * 7 6 3 9 9 C 1.39579 * 118.94632 * 180.29347 * 8 7 6 10 10 C 1.48162 * 120.89204 * 179.73292 * 9 8 7 11 11 O 1.21512 * 119.99722 * 19.22690 * 10 9 8 12 12 N 1.34770 * 119.99916 * 199.22433 * 10 9 8 13 13 C 1.46497 * 120.00325 * 7.14025 * 12 10 9 14 14 C 1.46509 * 119.99964 * 187.14251 * 12 10 9 15 15 C 1.50694 * 109.46761 * 270.00147 * 14 12 10 16 16 H 1.07999 * 120.00739 * 359.97438 * 15 14 12 17 17 C 1.37880 * 119.99873 * 180.02562 * 15 14 12 18 18 N 1.31513 * 119.99929 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00013 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47421 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47273 * 120.00027 * 19 17 15 22 22 H 1.48501 * 109.46738 * 239.99591 * 19 17 15 23 23 C 1.39966 * 118.21261 * 359.46836 * 9 8 7 24 24 C 1.37970 * 119.13587 * 0.26712 * 23 9 8 25 25 N 1.31905 * 120.98025 * 0.02562 * 24 23 9 26 26 H 1.09006 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47759 * 300.00133 * 1 2 3 28 28 H 1.08999 * 109.47612 * 60.00579 * 1 2 3 29 29 H 1.09001 * 109.47759 * 239.99867 * 2 1 3 30 30 H 1.09005 * 109.47535 * 119.99879 * 2 1 3 31 31 H 1.08998 * 109.47161 * 300.00260 * 5 3 2 32 32 H 1.09001 * 109.47483 * 60.00102 * 5 3 2 33 33 H 1.09006 * 109.47231 * 179.97438 * 5 3 2 34 34 H 1.08004 * 120.52713 * 0.05518 * 8 7 6 35 35 H 1.09002 * 109.47223 * 264.83758 * 13 12 10 36 36 H 1.09007 * 109.46778 * 24.83125 * 13 12 10 37 37 H 1.09001 * 109.47593 * 144.83330 * 13 12 10 38 38 H 1.09003 * 109.46773 * 149.99813 * 14 12 10 39 39 H 1.08998 * 109.46497 * 30.00109 * 14 12 10 40 40 H 0.96998 * 120.00271 * 179.97438 * 18 17 15 41 41 H 1.07997 * 120.42767 * 180.25018 * 23 9 8 42 42 H 1.08010 * 119.51148 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8419 5 6 3.5647 1.4444 -0.1257 6 8 1.6618 2.0814 1.2209 7 6 1.4504 3.4209 1.1755 8 6 1.0859 4.0981 2.3322 9 6 0.8660 5.4750 2.2680 10 6 0.4699 6.2390 3.4740 11 8 0.6649 5.7735 4.5794 12 7 -0.1066 7.4504 3.3451 13 6 -0.4844 7.9444 2.0187 14 6 -0.3553 8.2733 4.5314 15 6 -1.7228 7.9604 5.0819 16 1 -2.3447 7.2229 4.5965 17 6 -2.1806 8.6167 6.2048 18 7 -1.4237 9.5153 6.7957 19 14 -3.8760 8.2295 6.8867 20 1 -4.5224 7.1903 6.0457 21 1 -3.7472 7.7302 8.2794 22 1 -4.7064 9.4606 6.8771 23 6 1.0351 6.1153 1.0350 24 6 1.4045 5.3685 -0.0647 25 7 1.5981 4.0673 0.0321 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9993 0.9054 0.7161 32 1 3.8532 0.9571 -1.0571 33 1 3.9280 2.4722 -0.1262 34 1 0.9707 3.5671 3.2656 35 1 0.3136 8.5734 1.6243 36 1 -0.6458 7.0997 1.3488 37 1 -1.4021 8.5274 2.0959 38 1 -0.3056 9.3276 4.2592 39 1 0.3991 8.0574 5.2880 40 1 -1.7458 9.9772 7.5854 41 1 0.8782 7.1801 0.9455 42 1 1.5371 5.8565 -1.0191 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271931064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:44 Heat of formation + Delta-G solvation = -22.797473 kcal Electronic energy + Delta-G solvation = -23170.027923 eV Core-core repulsion = 19730.457479 eV Total energy + Delta-G solvation = -3439.570444 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.86933 -39.29139 -37.90921 -35.15535 -34.37033 -33.01173 -32.16548 -30.60519 -29.90481 -27.87443 -26.44347 -24.70214 -24.10223 -23.08133 -22.61341 -21.08918 -19.56835 -18.01532 -17.06611 -16.60848 -16.11195 -15.79795 -15.62809 -15.22413 -14.73024 -14.52297 -14.29528 -14.14263 -13.85396 -13.80944 -13.36408 -12.94353 -12.77547 -12.54302 -12.28257 -12.21836 -12.07523 -11.96525 -11.36405 -11.32413 -11.10597 -10.94179 -10.91978 -10.75421 -10.62114 -10.19632 -9.80438 -9.79615 -9.61793 -9.06940 -8.47856 -8.45695 -7.77231 -6.07893 -4.12561 0.90400 1.17242 2.88212 3.28763 3.31868 3.36875 3.41400 3.77054 4.01029 4.22413 4.42682 4.51009 4.73212 4.74916 4.87869 4.98418 5.06441 5.14949 5.18221 5.26921 5.33138 5.36612 5.50015 5.59540 5.68503 5.70075 5.72642 5.74320 5.82675 5.87916 5.95284 6.07774 6.14024 6.18826 6.36826 6.96092 7.24439 7.33606 7.42318 7.79218 7.87975 8.17146 8.24343 8.79643 8.95446 9.52564 11.00398 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.003348 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.301015 B = 8361.850594 C = 8917.483061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.085 3.915 4 H 0.090 0.910 5 C -0.169 4.169 6 O -0.298 6.298 7 C 0.317 3.683 8 C -0.139 4.139 9 C -0.039 4.039 10 C 0.542 3.458 11 O -0.523 6.523 12 N -0.589 5.589 13 C 0.066 3.934 14 C 0.246 3.754 15 C -0.527 4.527 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.899 3.101 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.283 1.283 23 C -0.205 4.205 24 C 0.129 3.871 25 N -0.534 5.534 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.150 0.850 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.165 0.835 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.586 -12.032 -18.329 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.108 0.892 5 C -0.226 4.226 6 O -0.205 6.205 7 C 0.138 3.862 8 C -0.160 4.160 9 C -0.050 4.050 10 C 0.328 3.672 11 O -0.400 6.400 12 N -0.320 5.320 13 C -0.077 4.077 14 C 0.127 3.873 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.727 3.273 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.225 4.225 24 C -0.026 4.026 25 N -0.258 5.258 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.168 0.832 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.182 0.818 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.901 -12.782 -18.069 23.184 hybrid contribution -1.118 0.422 0.907 1.501 sum 5.783 -12.360 -17.162 21.926 Atomic orbital electron populations 1.21762 0.95182 1.01765 1.02455 1.21686 0.96838 0.94354 1.02999 1.22390 0.95120 0.93051 0.86543 0.89247 1.22215 0.95193 1.02927 1.02301 1.86306 1.82525 1.16001 1.35715 1.19588 0.92497 0.84619 0.89463 1.21149 1.02963 0.93360 0.98542 1.20490 0.96363 0.93395 0.94762 1.18042 0.79677 0.81802 0.87692 1.90773 1.55138 1.67684 1.26414 1.48059 1.57671 1.17024 1.09294 1.22312 1.00627 0.99693 0.85088 1.19382 0.97458 0.89163 0.81311 1.21445 1.00736 1.22562 1.11787 0.92281 1.24937 0.97911 0.94931 0.96323 1.69934 1.36871 1.25794 1.20779 0.86420 0.83730 0.78089 0.79068 1.19767 1.20808 1.20939 1.23136 1.02984 1.03717 0.92655 1.22342 0.93749 0.87815 0.98714 1.67061 1.20269 1.11914 1.26605 0.92515 0.91987 0.92807 0.90171 0.90935 0.91991 0.91265 0.91919 0.83204 0.92831 0.90679 0.90672 0.94520 0.93743 0.92699 0.81819 0.82099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.81 37.15 0.36 -1.00 16 2 C -0.12 -1.02 5.64 -26.73 -0.15 -1.17 16 3 C 0.09 0.89 2.49 -26.73 -0.07 0.82 16 4 H 0.09 0.97 6.98 -51.93 -0.36 0.61 16 5 C -0.17 -1.55 9.53 37.16 0.35 -1.20 16 6 O -0.30 -4.02 9.30 -18.76 -0.17 -4.19 16 7 C 0.32 4.62 7.45 -17.16 -0.13 4.49 16 8 C -0.14 -2.26 9.61 -38.84 -0.37 -2.64 16 9 C -0.04 -0.66 5.60 -104.67 -0.59 -1.24 16 10 C 0.54 11.61 7.55 -12.19 -0.09 11.52 16 11 O -0.52 -13.46 16.26 5.36 0.09 -13.37 16 12 N -0.59 -12.38 2.86 -183.96 -0.53 -12.91 16 13 C 0.07 1.00 8.67 59.85 0.52 1.52 16 14 C 0.25 6.33 5.13 -5.19 -0.03 6.31 16 15 C -0.53 -14.88 9.39 -34.44 -0.32 -15.21 16 16 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 19 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.20 -2.63 7.71 -39.03 -0.30 -2.94 16 24 C 0.13 1.46 11.16 -17.62 -0.20 1.26 16 25 N -0.53 -7.00 8.61 -13.38 -0.12 -7.11 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.15 2.55 7.85 -52.48 -0.41 2.14 16 35 H 0.05 0.65 7.14 -51.93 -0.37 0.28 16 36 H 0.07 0.97 5.09 -51.93 -0.26 0.71 16 37 H 0.07 1.17 8.11 -51.93 -0.42 0.74 16 38 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 39 H 0.04 1.29 7.53 -51.93 -0.39 0.90 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.16 1.79 4.15 -52.49 -0.22 1.57 16 42 H 0.16 1.22 8.06 -52.48 -0.42 0.79 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -33.34 350.31 -7.03 -40.37 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.19 Total: -1.41 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.10 Total: 2.17 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.10 Total: -45.68 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.09 Total: -17.57 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.34 -7.03 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271931064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.572 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds