Wall clock time and date at job start Tue Mar 31 2020 07:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.46917 * 2 1 4 4 H 1.09005 * 109.47084 * 304.99886 * 3 2 1 5 5 C 1.53001 * 109.47123 * 184.99963 * 3 2 1 6 6 O 1.42891 * 109.47345 * 64.99929 * 3 2 1 7 7 C 1.35686 * 117.00123 * 209.99954 * 6 3 2 8 8 C 1.38898 * 119.62368 * 180.25221 * 7 6 3 9 9 C 1.39579 * 118.94632 * 180.29347 * 8 7 6 10 10 C 1.48162 * 120.89204 * 179.73292 * 9 8 7 11 11 O 1.21512 * 119.99722 * 19.22690 * 10 9 8 12 12 N 1.34770 * 119.99916 * 199.22433 * 10 9 8 13 13 C 1.46497 * 120.00325 * 7.14025 * 12 10 9 14 14 C 1.46509 * 119.99964 * 187.14251 * 12 10 9 15 15 C 1.50694 * 109.46761 * 270.00147 * 14 12 10 16 16 H 1.07999 * 120.00739 * 359.97438 * 15 14 12 17 17 C 1.37880 * 119.99873 * 180.02562 * 15 14 12 18 18 N 1.31513 * 119.99929 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00013 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47421 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47273 * 120.00027 * 19 17 15 22 22 H 1.48501 * 109.46738 * 239.99591 * 19 17 15 23 23 C 1.39966 * 118.21261 * 359.46836 * 9 8 7 24 24 C 1.37970 * 119.13587 * 0.26712 * 23 9 8 25 25 N 1.31905 * 120.98025 * 0.02562 * 24 23 9 26 26 H 1.09006 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47759 * 300.00133 * 1 2 3 28 28 H 1.08999 * 109.47612 * 60.00579 * 1 2 3 29 29 H 1.09001 * 109.47759 * 239.99867 * 2 1 3 30 30 H 1.09005 * 109.47535 * 119.99879 * 2 1 3 31 31 H 1.08998 * 109.47161 * 300.00260 * 5 3 2 32 32 H 1.09001 * 109.47483 * 60.00102 * 5 3 2 33 33 H 1.09006 * 109.47231 * 179.97438 * 5 3 2 34 34 H 1.08004 * 120.52713 * 0.05518 * 8 7 6 35 35 H 1.09002 * 109.47223 * 264.83758 * 13 12 10 36 36 H 1.09007 * 109.46778 * 24.83125 * 13 12 10 37 37 H 1.09001 * 109.47593 * 144.83330 * 13 12 10 38 38 H 1.09003 * 109.46773 * 149.99813 * 14 12 10 39 39 H 1.08998 * 109.46497 * 30.00109 * 14 12 10 40 40 H 0.96998 * 120.00271 * 179.97438 * 18 17 15 41 41 H 1.07997 * 120.42767 * 180.25018 * 23 9 8 42 42 H 1.08010 * 119.51148 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8419 5 6 3.5647 1.4444 -0.1257 6 8 1.6618 2.0814 1.2209 7 6 1.4504 3.4209 1.1755 8 6 1.0859 4.0981 2.3322 9 6 0.8660 5.4750 2.2680 10 6 0.4699 6.2390 3.4740 11 8 0.6649 5.7735 4.5794 12 7 -0.1066 7.4504 3.3451 13 6 -0.4844 7.9444 2.0187 14 6 -0.3553 8.2733 4.5314 15 6 -1.7228 7.9604 5.0819 16 1 -2.3447 7.2229 4.5965 17 6 -2.1806 8.6167 6.2048 18 7 -1.4237 9.5153 6.7957 19 14 -3.8760 8.2295 6.8867 20 1 -4.5224 7.1903 6.0457 21 1 -3.7472 7.7302 8.2794 22 1 -4.7064 9.4606 6.8771 23 6 1.0351 6.1153 1.0350 24 6 1.4045 5.3685 -0.0647 25 7 1.5981 4.0673 0.0321 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9993 0.9054 0.7161 32 1 3.8532 0.9571 -1.0571 33 1 3.9280 2.4722 -0.1262 34 1 0.9707 3.5671 3.2656 35 1 0.3136 8.5734 1.6243 36 1 -0.6458 7.0997 1.3488 37 1 -1.4021 8.5274 2.0959 38 1 -0.3056 9.3276 4.2592 39 1 0.3991 8.0574 5.2880 40 1 -1.7458 9.9772 7.5854 41 1 0.8782 7.1801 0.9455 42 1 1.5371 5.8565 -1.0191 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271931064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:43 Heat of formation + Delta-G solvation = -45.523180 kcal Electronic energy + Delta-G solvation = -23171.013384 eV Core-core repulsion = 19730.457479 eV Total energy + Delta-G solvation = -3440.555905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.02725 -40.68174 -39.08776 -36.87938 -35.25861 -34.86952 -33.60883 -31.65635 -30.74551 -29.71353 -27.89403 -26.21483 -25.05997 -24.28525 -24.00101 -22.11538 -20.84408 -19.30871 -18.74684 -18.24896 -17.41549 -17.02472 -16.87778 -16.73490 -16.18702 -16.06615 -15.47107 -15.14039 -14.91436 -14.77258 -14.50547 -14.33904 -14.12972 -13.91204 -13.66346 -13.50365 -13.28392 -12.91733 -12.88523 -12.68475 -12.63672 -12.33715 -12.16661 -12.03214 -11.75561 -11.71544 -11.55958 -11.19674 -10.98171 -10.66861 -10.47906 -9.57195 -9.47993 -8.25507 -6.39662 -0.33865 0.10913 1.35096 1.37872 1.49382 1.76463 1.91963 2.26521 2.40448 2.76967 3.04645 3.24966 3.44741 3.77358 3.90318 3.97020 4.00247 4.05122 4.20514 4.35212 4.43994 4.59041 4.60833 4.62206 4.68537 4.71029 4.80644 4.91185 4.95712 5.01879 5.04302 5.08310 5.13165 5.18357 5.22339 5.36910 5.40124 5.50566 5.75970 6.01481 6.25817 6.56586 6.68702 6.74325 7.16093 7.33279 8.82023 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.003348 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.301015 B = 8361.850594 C = 8917.483061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.078 3.922 4 H 0.089 0.911 5 C -0.164 4.164 6 O -0.313 6.313 7 C 0.318 3.682 8 C -0.163 4.163 9 C -0.054 4.054 10 C 0.534 3.466 11 O -0.586 6.586 12 N -0.594 5.594 13 C 0.057 3.943 14 C 0.259 3.741 15 C -0.545 4.545 16 H 0.050 0.950 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.967 3.033 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.266 1.266 23 C -0.193 4.193 24 C 0.148 3.852 25 N -0.528 5.528 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.126 0.874 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.037 0.963 39 H 0.000 1.000 40 H 0.268 0.732 41 H 0.190 0.810 42 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.277 -12.294 -21.841 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C 0.022 3.978 4 H 0.107 0.893 5 C -0.222 4.222 6 O -0.221 6.221 7 C 0.140 3.860 8 C -0.185 4.185 9 C -0.065 4.065 10 C 0.323 3.677 11 O -0.467 6.467 12 N -0.323 5.323 13 C -0.083 4.083 14 C 0.138 3.862 15 C -0.583 4.583 16 H 0.068 0.932 17 C -0.190 4.190 18 N -0.566 5.566 19 Si 0.791 3.209 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.191 1.191 23 C -0.212 4.212 24 C -0.007 4.007 25 N -0.253 5.253 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.144 0.856 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.018 0.982 40 H 0.077 0.923 41 H 0.207 0.793 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.589 -13.047 -21.635 26.110 hybrid contribution -0.961 0.483 1.903 2.186 sum 5.628 -12.564 -19.732 24.060 Atomic orbital electron populations 1.21759 0.95665 1.02375 1.01355 1.21730 0.96378 0.93209 1.04193 1.22705 0.96050 0.93792 0.85218 0.89286 1.22195 0.94092 1.02314 1.03582 1.86300 1.82416 1.15628 1.37721 1.19482 0.92205 0.85141 0.89152 1.21012 1.05159 0.93640 0.98700 1.20087 0.98826 0.93216 0.94334 1.18782 0.78644 0.81740 0.88564 1.90722 1.57597 1.69154 1.29200 1.48044 1.57391 1.16642 1.10259 1.22724 1.01901 1.01283 0.82439 1.18881 0.95134 0.89737 0.82432 1.21694 1.01665 1.22469 1.12480 0.93158 1.25822 1.01960 0.94661 0.96508 1.70036 1.38717 1.26566 1.21248 0.85378 0.79037 0.78479 0.77977 1.19444 1.20767 1.19065 1.23384 1.01845 1.04922 0.91078 1.23198 0.90626 0.86931 0.99975 1.67240 1.19784 1.12831 1.25401 0.91095 0.94505 0.92434 0.87353 0.91256 0.92269 0.88643 0.93301 0.85633 0.88830 0.87953 0.91067 0.94457 0.98237 0.92272 0.79287 0.76870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.81 71.98 0.71 -1.84 16 2 C -0.12 -1.76 5.64 30.59 0.17 -1.59 16 3 C 0.08 1.50 2.49 30.60 0.08 1.57 16 4 H 0.09 1.72 6.98 -2.38 -0.02 1.70 16 5 C -0.16 -2.70 9.53 71.98 0.69 -2.01 16 6 O -0.31 -8.44 9.30 -90.05 -0.84 -9.27 16 7 C 0.32 9.13 7.45 84.80 0.63 9.76 16 8 C -0.16 -5.55 9.61 22.75 0.22 -5.33 16 9 C -0.05 -1.82 5.60 -19.90 -0.11 -1.93 16 10 C 0.53 23.89 7.55 86.88 0.66 24.54 16 11 O -0.59 -32.48 16.26 -3.75 -0.06 -32.54 16 12 N -0.59 -25.39 2.86 -854.21 -2.44 -27.83 16 13 C 0.06 1.61 8.67 127.77 1.11 2.72 16 14 C 0.26 13.93 5.13 85.63 0.44 14.37 16 15 C -0.54 -31.73 9.39 25.60 0.24 -31.49 16 16 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 17 C 0.01 0.56 5.46 84.66 0.46 1.03 16 18 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 19 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 C -0.19 -4.36 7.71 22.63 0.17 -4.19 16 24 C 0.15 2.71 11.16 84.62 0.94 3.65 16 25 N -0.53 -12.39 8.61 -309.14 -2.66 -15.05 16 26 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.04 0.78 7.82 -2.39 -0.02 0.76 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.13 4.75 7.85 -2.91 -0.02 4.73 16 35 H 0.09 1.91 7.14 -2.39 -0.02 1.90 16 36 H 0.10 2.32 5.09 -2.38 -0.01 2.31 16 37 H 0.07 2.08 8.11 -2.39 -0.02 2.07 16 38 H 0.04 1.97 8.07 -2.39 -0.02 1.95 16 39 H 0.00 -0.03 7.53 -2.39 -0.02 -0.05 16 40 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.19 3.26 4.15 -2.91 -0.01 3.24 16 42 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -78.04 350.31 3.73 -74.32 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 1.01 Total: 9.29 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 6.40 Total: 9.26 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -4.82 Total: -98.44 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -0.90 Total: -41.81 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -78.04 3.73 -74.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271931064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.793 kcal (2) G-P(sol) polarization free energy of solvation -78.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds