Wall clock time and date at job start Tue Mar 31 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46878 * 2 1 4 4 C 1.53000 * 109.47168 * 120.00423 * 2 1 3 5 5 O 1.42900 * 109.46755 * 64.99768 * 4 2 1 6 6 C 1.35429 * 116.99697 * 179.97438 * 5 4 2 7 7 N 1.32237 * 119.79930 * 0.27056 * 6 5 4 8 8 C 1.31886 * 121.80191 * 180.31641 * 7 6 5 9 9 C 1.38360 * 121.17882 * 359.67040 * 8 7 6 10 10 C 1.38331 * 119.46359 * 0.02990 * 9 8 7 11 11 C 1.39993 * 118.34788 * 359.97438 * 10 9 8 12 12 C 1.47521 * 120.59624 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99875 * 179.97438 * 12 11 10 14 14 N 1.34773 * 120.00175 * 0.26811 * 12 11 10 15 15 C 1.46500 * 120.00431 * 179.72699 * 14 12 11 16 16 C 1.52999 * 109.47528 * 180.02562 * 15 14 12 17 17 C 1.50693 * 109.47331 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00168 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00446 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99480 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00311 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46896 * 90.00156 * 21 19 17 23 23 H 1.48504 * 109.46757 * 210.00143 * 21 19 17 24 24 H 1.48492 * 109.47185 * 329.99939 * 21 19 17 25 25 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46937 * 299.99595 * 1 2 3 27 27 H 1.08999 * 109.47011 * 59.99582 * 1 2 3 28 28 H 1.08998 * 109.46607 * 240.00379 * 2 1 3 29 29 H 1.09002 * 109.46559 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47640 * 300.00032 * 3 2 1 31 31 H 1.08998 * 109.47192 * 60.00737 * 3 2 1 32 32 H 1.09002 * 109.47108 * 304.99791 * 4 2 1 33 33 H 1.08992 * 109.46695 * 184.99730 * 4 2 1 34 34 H 1.07995 * 119.41144 * 179.69882 * 8 7 6 35 35 H 1.08002 * 120.26294 * 180.02562 * 9 8 7 36 36 H 1.07995 * 120.82810 * 180.02562 * 10 9 8 37 37 H 0.97000 * 120.00112 * 359.73137 * 14 12 11 38 38 H 1.09009 * 109.46712 * 300.00517 * 15 14 12 39 39 H 1.08993 * 109.47029 * 59.99907 * 15 14 12 40 40 H 1.09003 * 109.46366 * 299.99640 * 16 15 14 41 41 H 1.08993 * 109.47533 * 59.99613 * 16 15 14 42 42 H 0.97009 * 119.99998 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 1.6620 -2.0982 1.1918 6 6 2.0393 -2.8831 2.2290 7 7 2.7213 -2.3608 3.2342 8 6 3.1139 -3.0897 4.2609 9 6 2.8213 -4.4400 4.3342 10 6 2.1048 -5.0374 3.3128 11 6 1.6988 -4.2439 2.2333 12 6 0.9329 -4.8299 1.1169 13 8 0.5854 -4.1306 0.1849 14 7 0.6133 -6.1391 1.1329 15 6 -0.1525 -6.7198 0.0271 16 6 -0.3793 -8.2097 0.2908 17 6 -1.1664 -8.8071 -0.8469 18 1 -1.4745 -8.1861 -1.6751 19 6 -1.4933 -10.1464 -0.8307 20 7 -1.1185 -10.9025 0.1780 21 14 -2.4696 -10.8868 -2.2407 22 1 -1.5353 -11.3823 -3.2832 23 1 -3.2909 -12.0160 -1.7348 24 1 -3.3588 -9.8508 -2.8247 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6055 -0.2619 2.1370 33 1 3.1263 -0.6444 1.2950 34 1 3.6733 -2.6242 5.0588 35 1 3.1497 -5.0228 5.1821 36 1 1.8639 -6.0895 3.3477 37 1 0.8902 -6.6969 1.8765 38 1 -1.1151 -6.2146 -0.0529 39 1 0.4015 -6.5953 -0.9032 40 1 0.5832 -8.7150 0.3710 41 1 -0.9334 -8.3339 1.2211 42 1 -1.3488 -11.8448 0.1897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273009144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:42 Heat of formation + Delta-G solvation = -59.912065 kcal Electronic energy + Delta-G solvation = -22793.019203 eV Core-core repulsion = 19351.839349 eV Total energy + Delta-G solvation = -3441.179854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91980 -38.81019 -38.23516 -35.42204 -34.77866 -33.15625 -32.47658 -30.79102 -29.43660 -27.27608 -26.72003 -25.32216 -24.06001 -22.97062 -21.12016 -20.56912 -20.12945 -18.60656 -17.35383 -17.06671 -16.37538 -16.29096 -15.22608 -15.11409 -14.93004 -14.61116 -14.49422 -14.30767 -13.96281 -13.56406 -13.14212 -13.01639 -12.84330 -12.70877 -12.41252 -12.31863 -12.29406 -11.51241 -11.19507 -11.19171 -11.03650 -10.85224 -10.73081 -10.63964 -10.34055 -10.07424 -10.05646 -9.75983 -9.42213 -9.16429 -8.67306 -8.49377 -8.30396 -6.09609 -4.12166 0.62610 1.11621 2.91028 3.10825 3.29766 3.35740 3.39798 3.59794 3.86860 4.13935 4.42239 4.57955 4.65721 4.70961 4.74680 4.85256 4.98838 5.11210 5.27671 5.29725 5.36608 5.38759 5.42968 5.54239 5.70721 5.71631 5.78780 5.90809 5.91791 6.10092 6.21855 6.31234 6.36645 6.36778 6.75026 6.92521 7.20647 7.51387 7.61591 7.62083 7.88957 8.02321 8.28283 8.67954 8.93857 9.52687 11.02073 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.003243 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.304223 B = 8631.352312 C =10099.983440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.143 4.143 4 C 0.070 3.930 5 O -0.264 6.264 6 C 0.371 3.629 7 N -0.549 5.549 8 C 0.159 3.841 9 C -0.221 4.221 10 C -0.010 4.010 11 C -0.203 4.203 12 C 0.553 3.447 13 O -0.524 6.524 14 N -0.720 5.720 15 C 0.124 3.876 16 C 0.012 3.988 17 C -0.521 4.521 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.162 0.838 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.394 0.606 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.436 19.102 8.930 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.200 4.200 4 C -0.005 4.005 5 O -0.168 6.168 6 C 0.191 3.809 7 N -0.273 5.273 8 C 0.002 3.998 9 C -0.242 4.242 10 C -0.036 4.036 11 C -0.209 4.209 12 C 0.338 3.662 13 O -0.401 6.401 14 N -0.371 5.371 15 C 0.002 3.998 16 C -0.025 4.025 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.179 0.821 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.228 0.772 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.179 20.264 7.979 23.633 hybrid contribution -0.387 -1.615 -0.025 1.661 sum 8.791 18.648 7.954 22.098 Atomic orbital electron populations 1.21826 0.94224 1.03217 1.01248 1.21144 0.97205 0.95525 0.97603 1.21761 1.01027 0.94948 1.02293 1.22802 0.99838 0.78998 0.98887 1.86537 1.71286 1.21194 1.37786 1.19838 0.87650 0.87728 0.85716 1.67476 1.16508 1.40030 1.03302 1.22606 0.92898 0.90777 0.93519 1.21917 1.04315 0.96599 1.01358 1.21742 0.91222 1.00023 0.90581 1.20250 1.08550 0.92468 0.99637 1.17785 0.80136 0.82594 0.85678 1.90802 1.53685 1.60263 1.35352 1.46222 1.56450 1.08782 1.25608 1.21731 0.94063 0.96583 0.87448 1.19326 0.97580 0.87602 0.97997 1.21053 1.34805 0.94279 1.05819 0.92210 1.24994 0.95988 0.97171 0.96136 1.69955 1.46420 1.06422 1.30579 0.86510 0.80044 0.78815 0.82186 1.20558 1.21177 1.19701 0.91119 0.93076 0.92639 0.89965 0.92498 0.91813 0.92467 0.91703 0.91786 0.82089 0.83942 0.83534 0.77194 0.92436 0.92436 0.95946 0.95929 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.09 37.16 0.34 -1.33 16 2 C -0.10 -1.03 3.16 -90.62 -0.29 -1.32 16 3 C -0.14 -1.13 9.19 37.15 0.34 -0.79 16 4 C 0.07 0.85 4.69 37.16 0.17 1.02 16 5 O -0.26 -4.19 7.75 -39.75 -0.31 -4.50 16 6 C 0.37 5.60 7.51 -16.61 -0.12 5.48 16 7 N -0.55 -6.97 9.21 -12.98 -0.12 -7.09 16 8 C 0.16 1.51 11.17 -17.48 -0.20 1.32 16 9 C -0.22 -1.99 10.09 -39.50 -0.40 -2.39 16 10 C -0.01 -0.11 9.64 -38.89 -0.37 -0.49 16 11 C -0.20 -3.06 5.90 -104.69 -0.62 -3.68 16 12 C 0.55 10.20 7.77 -12.48 -0.10 10.11 16 13 O -0.52 -11.43 15.19 -16.49 -0.25 -11.68 16 14 N -0.72 -12.95 5.51 -61.35 -0.34 -13.29 16 15 C 0.12 2.67 5.61 -4.04 -0.02 2.64 16 16 C 0.01 0.31 5.09 -27.89 -0.14 0.16 16 17 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 21 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.07 1.00 7.82 -51.93 -0.41 0.59 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.06 0.73 8.11 -51.93 -0.42 0.30 16 34 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.15 1.36 6.51 -52.49 -0.34 1.02 16 37 H 0.39 6.00 6.57 -40.82 -0.27 5.73 16 38 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -33.13 355.98 -8.23 -41.35 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.47 Total: 1.28 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.82 Total: -2.48 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.28 Total: -45.71 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.56 Total: -16.18 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.13 -8.23 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273009144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.557 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds