Wall clock time and date at job start Tue Mar 31 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46878 * 2 1 4 4 C 1.53000 * 109.47168 * 120.00423 * 2 1 3 5 5 O 1.42900 * 109.46755 * 64.99768 * 4 2 1 6 6 C 1.35429 * 116.99697 * 179.97438 * 5 4 2 7 7 N 1.32237 * 119.79930 * 0.27056 * 6 5 4 8 8 C 1.31886 * 121.80191 * 180.31641 * 7 6 5 9 9 C 1.38360 * 121.17882 * 359.67040 * 8 7 6 10 10 C 1.38331 * 119.46359 * 0.02990 * 9 8 7 11 11 C 1.39993 * 118.34788 * 359.97438 * 10 9 8 12 12 C 1.47521 * 120.59624 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99875 * 179.97438 * 12 11 10 14 14 N 1.34773 * 120.00175 * 0.26811 * 12 11 10 15 15 C 1.46500 * 120.00431 * 179.72699 * 14 12 11 16 16 C 1.52999 * 109.47528 * 180.02562 * 15 14 12 17 17 C 1.50693 * 109.47331 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00168 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00446 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99480 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00311 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46896 * 90.00156 * 21 19 17 23 23 H 1.48504 * 109.46757 * 210.00143 * 21 19 17 24 24 H 1.48492 * 109.47185 * 329.99939 * 21 19 17 25 25 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46937 * 299.99595 * 1 2 3 27 27 H 1.08999 * 109.47011 * 59.99582 * 1 2 3 28 28 H 1.08998 * 109.46607 * 240.00379 * 2 1 3 29 29 H 1.09002 * 109.46559 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47640 * 300.00032 * 3 2 1 31 31 H 1.08998 * 109.47192 * 60.00737 * 3 2 1 32 32 H 1.09002 * 109.47108 * 304.99791 * 4 2 1 33 33 H 1.08992 * 109.46695 * 184.99730 * 4 2 1 34 34 H 1.07995 * 119.41144 * 179.69882 * 8 7 6 35 35 H 1.08002 * 120.26294 * 180.02562 * 9 8 7 36 36 H 1.07995 * 120.82810 * 180.02562 * 10 9 8 37 37 H 0.97000 * 120.00112 * 359.73137 * 14 12 11 38 38 H 1.09009 * 109.46712 * 300.00517 * 15 14 12 39 39 H 1.08993 * 109.47029 * 59.99907 * 15 14 12 40 40 H 1.09003 * 109.46366 * 299.99640 * 16 15 14 41 41 H 1.08993 * 109.47533 * 59.99613 * 16 15 14 42 42 H 0.97009 * 119.99998 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 1.6620 -2.0982 1.1918 6 6 2.0393 -2.8831 2.2290 7 7 2.7213 -2.3608 3.2342 8 6 3.1139 -3.0897 4.2609 9 6 2.8213 -4.4400 4.3342 10 6 2.1048 -5.0374 3.3128 11 6 1.6988 -4.2439 2.2333 12 6 0.9329 -4.8299 1.1169 13 8 0.5854 -4.1306 0.1849 14 7 0.6133 -6.1391 1.1329 15 6 -0.1525 -6.7198 0.0271 16 6 -0.3793 -8.2097 0.2908 17 6 -1.1664 -8.8071 -0.8469 18 1 -1.4745 -8.1861 -1.6751 19 6 -1.4933 -10.1464 -0.8307 20 7 -1.1185 -10.9025 0.1780 21 14 -2.4696 -10.8868 -2.2407 22 1 -1.5353 -11.3823 -3.2832 23 1 -3.2909 -12.0160 -1.7348 24 1 -3.3588 -9.8508 -2.8247 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6055 -0.2619 2.1370 33 1 3.1263 -0.6444 1.2950 34 1 3.6733 -2.6242 5.0588 35 1 3.1497 -5.0228 5.1821 36 1 1.8639 -6.0895 3.3477 37 1 0.8902 -6.6969 1.8765 38 1 -1.1151 -6.2146 -0.0529 39 1 0.4015 -6.5953 -0.9032 40 1 0.5832 -8.7150 0.3710 41 1 -0.9334 -8.3339 1.2211 42 1 -1.3488 -11.8448 0.1897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273009144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:42 Heat of formation + Delta-G solvation = -81.868311 kcal Electronic energy + Delta-G solvation = -22793.971297 eV Core-core repulsion = 19351.839349 eV Total energy + Delta-G solvation = -3442.131948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94542 -40.20060 -39.22686 -36.63912 -36.19910 -34.90317 -33.76655 -31.84871 -31.15387 -28.08622 -27.64821 -26.99639 -25.35822 -23.98230 -22.90141 -21.86732 -21.14161 -19.61192 -18.74127 -18.41203 -17.95828 -17.35471 -16.53591 -16.48877 -16.40364 -15.95755 -15.72251 -15.34526 -15.19625 -14.78857 -14.37940 -14.29754 -14.08468 -13.94251 -13.55871 -13.33036 -13.20660 -13.03351 -12.94757 -12.53998 -12.34156 -12.25278 -12.08062 -11.72947 -11.67369 -11.60753 -11.48035 -11.14266 -11.04152 -10.60672 -10.60020 -10.06887 -9.52388 -8.24620 -6.34752 -0.34341 0.23144 1.41669 1.42038 1.53614 1.88002 1.97715 2.16970 2.43643 2.80714 3.10203 3.25951 3.70742 3.72898 3.82194 3.88052 3.97543 4.10653 4.25380 4.40496 4.47142 4.47810 4.54078 4.58292 4.63452 4.75822 4.83681 4.88984 4.93025 4.97543 5.09309 5.16515 5.25903 5.31213 5.36717 5.44789 5.48862 5.57482 5.77907 6.15777 6.25186 6.56634 6.74869 6.77967 7.24644 7.34383 8.87273 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.003243 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.304223 B = 8631.352312 C =10099.983440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.135 4.135 4 C 0.070 3.930 5 O -0.295 6.295 6 C 0.351 3.649 7 N -0.557 5.557 8 C 0.166 3.834 9 C -0.204 4.204 10 C -0.008 4.008 11 C -0.236 4.236 12 C 0.552 3.448 13 O -0.568 6.568 14 N -0.713 5.713 15 C 0.143 3.857 16 C 0.024 3.976 17 C -0.548 4.548 18 H 0.057 0.943 19 C 0.009 3.991 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.267 1.267 25 H 0.032 0.968 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.207 0.793 35 H 0.186 0.814 36 H 0.164 0.836 37 H 0.408 0.592 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.011 0.989 41 H 0.011 0.989 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.507 19.675 10.611 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.192 4.192 4 C -0.005 4.005 5 O -0.200 6.200 6 C 0.172 3.828 7 N -0.282 5.282 8 C 0.009 3.991 9 C -0.224 4.224 10 C -0.034 4.034 11 C -0.242 4.242 12 C 0.340 3.660 13 O -0.448 6.448 14 N -0.365 5.365 15 C 0.020 3.980 16 C -0.013 4.013 17 C -0.586 4.586 18 H 0.075 0.925 19 C -0.190 4.190 20 N -0.565 5.565 21 Si 0.789 3.211 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.192 1.192 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.223 0.777 35 H 0.203 0.797 36 H 0.181 0.819 37 H 0.245 0.755 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.267 20.835 9.689 25.167 hybrid contribution -0.638 -1.767 -0.405 1.922 sum 9.630 19.068 9.284 23.292 Atomic orbital electron populations 1.21775 0.94859 1.01030 1.02434 1.21189 0.96678 0.97204 0.96421 1.21716 1.01551 0.92678 1.03285 1.22951 1.00176 0.77802 0.99553 1.86509 1.71958 1.22717 1.38865 1.20020 0.88613 0.87773 0.86399 1.67575 1.16547 1.40536 1.03572 1.23492 0.91316 0.91234 0.93058 1.22388 1.02073 0.96622 1.01302 1.22042 0.90826 1.00605 0.89901 1.20045 1.10818 0.93215 1.00104 1.18336 0.79530 0.82005 0.86138 1.90769 1.55517 1.61141 1.37359 1.45977 1.56188 1.09171 1.25167 1.21232 0.93837 0.94719 0.88244 1.19125 0.96310 0.89175 0.96693 1.21458 1.35532 0.94981 1.06666 0.92464 1.25846 0.96891 0.97552 0.98740 1.70050 1.47308 1.06863 1.32252 0.85457 0.78663 0.78022 0.78989 1.19750 1.20377 1.19194 0.94894 0.91930 0.91366 0.91677 0.91618 0.90830 0.91429 0.91242 0.91251 0.77683 0.79666 0.81852 0.75493 0.93675 0.93642 0.97082 0.97069 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.09 71.98 0.65 -2.72 16 2 C -0.10 -2.12 3.16 -10.79 -0.03 -2.15 16 3 C -0.14 -1.97 9.19 71.98 0.66 -1.31 16 4 C 0.07 1.73 4.69 71.98 0.34 2.06 16 5 O -0.30 -9.86 7.75 -66.43 -0.51 -10.38 16 6 C 0.35 10.70 7.51 85.13 0.64 11.34 16 7 N -0.56 -13.24 9.21 -307.99 -2.84 -16.08 16 8 C 0.17 2.53 11.17 84.71 0.95 3.47 16 9 C -0.20 -2.83 10.09 22.32 0.23 -2.61 16 10 C -0.01 -0.17 9.64 22.72 0.22 0.05 16 11 C -0.24 -7.16 5.90 -19.91 -0.12 -7.28 16 12 C 0.55 21.25 7.77 86.69 0.67 21.92 16 13 O -0.57 -26.39 15.19 16.81 0.26 -26.13 16 14 N -0.71 -26.44 5.51 -466.29 -2.57 -29.01 16 15 C 0.14 6.43 5.61 86.38 0.48 6.91 16 16 C 0.02 1.24 5.09 29.85 0.15 1.40 16 17 C -0.55 -30.98 9.11 25.60 0.23 -30.75 16 18 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 19 C 0.01 0.48 5.46 84.65 0.46 0.95 16 20 N -0.93 -54.13 13.29 21.45 0.28 -53.85 16 21 Si 0.96 43.89 29.54 68.60 2.03 45.91 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 H 0.03 1.01 7.82 -2.39 -0.02 0.99 16 26 H 0.06 1.28 8.14 -2.38 -0.02 1.27 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.59 8.10 -2.39 -0.02 1.57 16 33 H 0.07 1.57 8.11 -2.39 -0.02 1.55 16 34 H 0.21 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.19 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.16 2.69 6.51 -2.91 -0.02 2.67 16 37 H 0.41 12.51 6.57 -92.71 -0.61 11.90 16 38 H 0.04 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -74.78 355.98 2.58 -72.19 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.40 Total: 16.05 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 5.54 Total: 1.29 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -5.12 Total: -98.93 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.26 Total: -36.51 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -74.78 2.58 -72.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273009144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.674 kcal (2) G-P(sol) polarization free energy of solvation -74.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds