Wall clock time and date at job start Tue Mar 31 2020 06:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46869 * 2 1 4 4 H 1.08999 * 109.46713 * 305.68501 * 3 2 1 5 5 C 1.50697 * 109.46804 * 185.69146 * 3 2 1 6 6 H 1.08004 * 119.99914 * 274.99824 * 5 3 2 7 7 C 1.37878 * 120.00229 * 95.00523 * 5 3 2 8 8 N 1.31520 * 120.00161 * 184.82733 * 7 5 3 9 9 Si 1.86803 * 119.99970 * 4.82393 * 7 5 3 10 10 H 1.48499 * 109.46719 * 84.86594 * 9 7 5 11 11 H 1.48497 * 109.47216 * 204.86169 * 9 7 5 12 12 H 1.48495 * 109.46839 * 324.86405 * 9 7 5 13 13 N 1.46494 * 109.47315 * 65.68788 * 3 2 1 14 14 C 1.34779 * 120.00095 * 275.00085 * 13 3 2 15 15 O 1.21573 * 119.99770 * 359.97438 * 14 13 3 16 16 C 1.47610 * 119.99915 * 180.02562 * 14 13 3 17 17 C 1.40280 * 120.50033 * 180.02562 * 16 14 13 18 18 C 1.37955 * 118.36317 * 180.02562 * 17 16 14 19 19 C 1.39170 * 119.25870 * 359.97438 * 18 17 16 20 20 O 1.35501 * 119.52452 * 179.97438 * 19 18 17 21 21 C 1.42895 * 117.00034 * 180.02562 * 20 19 18 22 22 C 1.53009 * 109.47256 * 270.00045 * 21 20 19 23 23 C 1.53001 * 109.47408 * 150.00356 * 21 20 19 24 24 N 1.32402 * 120.95070 * 0.27748 * 19 18 17 25 25 C 1.31669 * 121.79852 * 359.42987 * 24 19 18 26 26 H 1.08993 * 109.47116 * 300.00317 * 1 2 3 27 27 H 1.09000 * 109.46475 * 60.00281 * 1 2 3 28 28 H 1.09002 * 109.46562 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47593 * 240.00131 * 2 1 3 30 30 H 1.09000 * 109.47249 * 119.99210 * 2 1 3 31 31 H 0.97001 * 120.00066 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00050 * 95.00251 * 13 3 2 33 33 H 1.08000 * 120.82128 * 359.97438 * 17 16 14 34 34 H 1.08001 * 120.37073 * 180.02562 * 18 17 16 35 35 H 1.08996 * 109.47059 * 30.00014 * 21 20 19 36 36 H 1.09004 * 109.46878 * 300.00570 * 22 21 20 37 37 H 1.09000 * 109.46980 * 59.99898 * 22 21 20 38 38 H 1.08991 * 109.47187 * 180.02562 * 22 21 20 39 39 H 1.08991 * 109.47572 * 179.97438 * 23 21 20 40 40 H 1.09004 * 109.47062 * 300.00113 * 23 21 20 41 41 H 1.09005 * 109.47352 * 59.99591 * 23 21 20 42 42 H 1.07996 * 119.68715 * 180.30858 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5959 1.9849 -0.8347 5 6 3.5404 1.4449 -0.1409 6 1 4.1650 1.3335 0.7331 7 6 4.1157 1.5894 -1.3855 8 7 5.4206 1.4965 -1.5216 9 14 3.0419 1.9170 -2.8786 10 1 2.7755 3.3739 -2.9865 11 1 3.7404 1.4496 -4.1028 12 1 1.7564 1.1881 -2.7332 13 7 1.6666 2.0925 1.2587 14 6 0.4507 2.6589 1.3899 15 8 -0.3361 2.6308 0.4635 16 6 0.0748 3.3143 2.6579 17 6 -1.1882 3.9066 2.8062 18 6 -1.4931 4.5075 4.0100 19 6 -0.5462 4.5061 5.0300 20 8 -0.8398 5.0951 6.2144 21 6 0.1716 5.0627 7.2233 22 6 0.0036 3.8018 8.0737 23 6 0.0428 6.2997 8.1146 24 7 0.6395 3.9427 4.8576 25 6 0.9700 3.3536 3.7274 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8935 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 5.8253 1.5978 -2.3973 32 1 2.2945 2.1153 1.9976 33 1 -1.9039 3.8934 1.9975 34 1 -2.4561 4.9729 4.1596 35 1 1.1545 5.0550 6.7524 36 1 -0.9794 3.8095 8.5446 37 1 0.0954 2.9206 7.4388 38 1 0.7748 3.7773 8.8435 39 1 0.8139 6.2748 8.8844 40 1 0.1625 7.1980 7.5089 41 1 -0.9402 6.3074 8.5856 42 1 1.9450 2.9005 3.6256 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273814940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:55 Heat of formation + Delta-G solvation = -51.540321 kcal Electronic energy + Delta-G solvation = -23239.665693 eV Core-core repulsion = 19798.848865 eV Total energy + Delta-G solvation = -3440.816828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88037 -39.32930 -37.95668 -35.24639 -33.56113 -32.54363 -32.43728 -31.76656 -30.00040 -27.56991 -27.46356 -24.30183 -24.06129 -22.76520 -21.40511 -20.65577 -19.68097 -18.69028 -17.87447 -16.94684 -16.37537 -15.91287 -15.41944 -14.98680 -14.73510 -14.62979 -14.37425 -14.01294 -13.65219 -13.39214 -13.05756 -12.82164 -12.69178 -12.61607 -12.57729 -12.36427 -12.08618 -11.92186 -11.83747 -11.17780 -10.97897 -10.96544 -10.71826 -10.69302 -10.07960 -9.98571 -9.86682 -9.82609 -9.26801 -9.17179 -8.72833 -8.59987 -8.04424 -6.26068 -4.30184 0.79688 1.14666 2.80802 3.20252 3.25602 3.33117 3.40177 3.88181 4.01314 4.09869 4.30571 4.59731 4.70968 4.81645 4.88396 4.96657 5.00587 5.09212 5.26795 5.31943 5.44751 5.50641 5.54082 5.57702 5.75731 5.87739 5.93159 6.03830 6.07460 6.12570 6.24517 6.30186 6.63147 6.76954 6.93599 6.98614 7.08879 7.26141 7.31786 7.51859 7.67496 8.08991 8.50850 8.73909 8.89349 9.35731 10.85452 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024047 B = 0.003519 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.091602 B = 7954.606057 C = 8382.683353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.053 0.947 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.887 5.887 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.258 1.258 13 N -0.696 5.696 14 C 0.551 3.449 15 O -0.549 6.549 16 C -0.214 4.214 17 C 0.012 3.988 18 C -0.201 4.201 19 C 0.335 3.665 20 O -0.301 6.301 21 C 0.079 3.921 22 C -0.168 4.168 23 C -0.150 4.150 24 N -0.543 5.543 25 C 0.176 3.824 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.030 0.970 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.268 0.732 32 H 0.391 0.609 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.205 5.921 16.311 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.135 3.865 4 H 0.070 0.930 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.344 5.344 14 C 0.336 3.664 15 O -0.429 6.429 16 C -0.220 4.220 17 C -0.014 4.014 18 C -0.221 4.221 19 C 0.157 3.843 20 O -0.208 6.208 21 C 0.023 3.977 22 C -0.226 4.226 23 C -0.208 4.208 24 N -0.267 5.267 25 C 0.018 3.982 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.226 0.774 33 H 0.170 0.830 34 H 0.162 0.838 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.208 6.053 16.288 20.677 hybrid contribution -0.433 0.093 -1.048 1.137 sum -11.640 6.146 15.240 20.138 Atomic orbital electron populations 1.21910 0.97415 0.98892 1.02043 1.22078 0.93680 0.99337 1.01327 1.19210 0.95591 0.89146 0.82556 0.92956 1.21001 0.88599 1.51900 0.95522 0.90280 1.24935 0.94871 0.93611 0.98811 1.69881 1.09765 1.48149 1.24545 0.86913 0.81306 0.79673 0.82213 1.19842 1.21200 1.18265 1.46581 1.14032 1.55483 1.18344 1.17907 0.83012 0.79049 0.86396 1.90735 1.50990 1.60495 1.40721 1.21133 0.97034 1.06639 0.97215 1.21537 0.94919 0.89010 0.95899 1.21010 1.01191 1.07329 0.92600 1.20007 0.89336 0.88970 0.86024 1.86254 1.42774 1.71578 1.20207 1.22387 0.92294 0.96070 0.86983 1.22215 1.02467 0.97710 1.00184 1.21908 1.03024 0.96621 0.99199 1.67246 1.18235 1.14820 1.26370 1.22723 0.98512 0.90917 0.86035 0.93176 0.93064 0.95068 0.91986 0.92947 0.92196 0.77444 0.82963 0.83783 0.88967 0.92093 0.91847 0.91039 0.90453 0.91799 0.91714 0.81708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.53 37.16 0.32 -2.53 16 2 C -0.13 -2.65 5.59 -26.73 -0.15 -2.80 16 3 C 0.24 5.45 1.89 -69.08 -0.13 5.32 16 4 H 0.05 1.32 4.73 -51.93 -0.25 1.07 16 5 C -0.53 -13.92 9.05 -34.44 -0.31 -14.23 16 6 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 9 Si 0.87 21.23 26.99 -169.99 -4.59 16.64 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.26 -6.16 6.82 56.52 0.39 -5.78 16 13 N -0.70 -13.51 4.98 -55.96 -0.28 -13.79 16 14 C 0.55 10.32 6.37 -12.44 -0.08 10.24 16 15 O -0.55 -11.80 13.55 5.30 0.07 -11.73 16 16 C -0.21 -3.26 5.89 -104.82 -0.62 -3.88 16 17 C 0.01 0.16 9.70 -38.92 -0.38 -0.21 16 18 C -0.20 -2.40 10.02 -39.34 -0.39 -2.80 16 19 C 0.34 4.33 7.46 -16.96 -0.13 4.21 16 20 O -0.30 -3.55 9.75 -18.20 -0.18 -3.73 16 21 C 0.08 0.76 3.11 -26.73 -0.08 0.68 16 22 C -0.17 -1.45 9.53 37.16 0.35 -1.10 16 23 C -0.15 -1.09 9.56 37.16 0.36 -0.73 16 24 N -0.54 -7.32 8.61 -12.96 -0.11 -7.43 16 25 C 0.18 2.40 10.71 -17.14 -0.18 2.22 16 26 H 0.05 0.98 5.63 -51.93 -0.29 0.68 16 27 H 0.05 1.06 7.88 -51.93 -0.41 0.65 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 32 H 0.39 6.64 6.65 -40.82 -0.27 6.36 16 33 H 0.15 1.93 7.73 -52.49 -0.41 1.52 16 34 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.09 0.98 6.97 -51.93 -0.36 0.62 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.17 1.97 6.41 -52.49 -0.34 1.64 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -30.65 345.45 -6.75 -37.40 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.12 Total: 5.84 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.52 Total: -3.45 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.38 Total: -46.18 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.11 Total: -15.46 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.59 Total: 16.64 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.65 -6.75 -37.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273814940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.138 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds