Wall clock time and date at job start Tue Mar 31 2020 06:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46869 * 2 1 4 4 H 1.08999 * 109.46713 * 305.68501 * 3 2 1 5 5 C 1.50697 * 109.46804 * 185.69146 * 3 2 1 6 6 H 1.08004 * 119.99914 * 274.99824 * 5 3 2 7 7 C 1.37878 * 120.00229 * 95.00523 * 5 3 2 8 8 N 1.31520 * 120.00161 * 184.82733 * 7 5 3 9 9 Si 1.86803 * 119.99970 * 4.82393 * 7 5 3 10 10 H 1.48499 * 109.46719 * 84.86594 * 9 7 5 11 11 H 1.48497 * 109.47216 * 204.86169 * 9 7 5 12 12 H 1.48495 * 109.46839 * 324.86405 * 9 7 5 13 13 N 1.46494 * 109.47315 * 65.68788 * 3 2 1 14 14 C 1.34779 * 120.00095 * 275.00085 * 13 3 2 15 15 O 1.21573 * 119.99770 * 359.97438 * 14 13 3 16 16 C 1.47610 * 119.99915 * 180.02562 * 14 13 3 17 17 C 1.40280 * 120.50033 * 180.02562 * 16 14 13 18 18 C 1.37955 * 118.36317 * 180.02562 * 17 16 14 19 19 C 1.39170 * 119.25870 * 359.97438 * 18 17 16 20 20 O 1.35501 * 119.52452 * 179.97438 * 19 18 17 21 21 C 1.42895 * 117.00034 * 180.02562 * 20 19 18 22 22 C 1.53009 * 109.47256 * 270.00045 * 21 20 19 23 23 C 1.53001 * 109.47408 * 150.00356 * 21 20 19 24 24 N 1.32402 * 120.95070 * 0.27748 * 19 18 17 25 25 C 1.31669 * 121.79852 * 359.42987 * 24 19 18 26 26 H 1.08993 * 109.47116 * 300.00317 * 1 2 3 27 27 H 1.09000 * 109.46475 * 60.00281 * 1 2 3 28 28 H 1.09002 * 109.46562 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47593 * 240.00131 * 2 1 3 30 30 H 1.09000 * 109.47249 * 119.99210 * 2 1 3 31 31 H 0.97001 * 120.00066 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00050 * 95.00251 * 13 3 2 33 33 H 1.08000 * 120.82128 * 359.97438 * 17 16 14 34 34 H 1.08001 * 120.37073 * 180.02562 * 18 17 16 35 35 H 1.08996 * 109.47059 * 30.00014 * 21 20 19 36 36 H 1.09004 * 109.46878 * 300.00570 * 22 21 20 37 37 H 1.09000 * 109.46980 * 59.99898 * 22 21 20 38 38 H 1.08991 * 109.47187 * 180.02562 * 22 21 20 39 39 H 1.08991 * 109.47572 * 179.97438 * 23 21 20 40 40 H 1.09004 * 109.47062 * 300.00113 * 23 21 20 41 41 H 1.09005 * 109.47352 * 59.99591 * 23 21 20 42 42 H 1.07996 * 119.68715 * 180.30858 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5959 1.9849 -0.8347 5 6 3.5404 1.4449 -0.1409 6 1 4.1650 1.3335 0.7331 7 6 4.1157 1.5894 -1.3855 8 7 5.4206 1.4965 -1.5216 9 14 3.0419 1.9170 -2.8786 10 1 2.7755 3.3739 -2.9865 11 1 3.7404 1.4496 -4.1028 12 1 1.7564 1.1881 -2.7332 13 7 1.6666 2.0925 1.2587 14 6 0.4507 2.6589 1.3899 15 8 -0.3361 2.6308 0.4635 16 6 0.0748 3.3143 2.6579 17 6 -1.1882 3.9066 2.8062 18 6 -1.4931 4.5075 4.0100 19 6 -0.5462 4.5061 5.0300 20 8 -0.8398 5.0951 6.2144 21 6 0.1716 5.0627 7.2233 22 6 0.0036 3.8018 8.0737 23 6 0.0428 6.2997 8.1146 24 7 0.6395 3.9427 4.8576 25 6 0.9700 3.3536 3.7274 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8935 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 5.8253 1.5978 -2.3973 32 1 2.2945 2.1153 1.9976 33 1 -1.9039 3.8934 1.9975 34 1 -2.4561 4.9729 4.1596 35 1 1.1545 5.0550 6.7524 36 1 -0.9794 3.8095 8.5446 37 1 0.0954 2.9206 7.4388 38 1 0.7748 3.7773 8.8435 39 1 0.8139 6.2748 8.8844 40 1 0.1625 7.1980 7.5089 41 1 -0.9402 6.3074 8.5856 42 1 1.9450 2.9005 3.6256 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273814940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:54 Heat of formation + Delta-G solvation = -72.231220 kcal Electronic energy + Delta-G solvation = -23240.562917 eV Core-core repulsion = 19798.848865 eV Total energy + Delta-G solvation = -3441.714052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.94405 -40.67893 -39.04823 -36.96555 -34.51776 -34.26719 -33.60441 -33.30115 -31.21070 -29.31906 -28.16012 -25.57068 -25.08645 -24.48800 -22.45604 -21.90956 -21.34609 -19.71967 -19.47039 -18.15380 -18.01894 -17.10401 -16.77823 -16.30657 -16.15376 -15.83737 -15.49522 -15.25054 -14.78217 -14.75611 -14.53189 -14.08995 -13.87655 -13.84672 -13.70607 -13.58610 -13.25905 -13.16783 -12.92628 -12.85981 -12.55835 -12.35205 -11.92638 -11.86432 -11.75927 -11.67712 -11.19950 -11.08155 -11.03724 -10.82251 -10.54848 -9.82810 -9.53055 -8.38035 -6.43915 -0.31866 0.12662 1.30301 1.35075 1.45478 1.91792 1.92175 2.27966 2.39616 2.80303 3.03677 3.11082 3.72994 3.83167 3.91555 3.99146 4.03248 4.09901 4.28997 4.33396 4.43682 4.54352 4.57565 4.66546 4.71916 4.84102 4.84529 4.86517 4.94298 5.07374 5.13879 5.21521 5.25533 5.27187 5.29507 5.33487 5.42573 5.57728 5.75631 6.13318 6.15196 6.61341 6.63914 6.87237 7.21597 7.41195 8.76801 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024047 B = 0.003519 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.091602 B = 7954.606057 C = 8382.683353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.242 3.758 4 H 0.033 0.967 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.035 3.965 8 N -0.929 5.929 9 Si 0.923 3.077 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.252 1.252 13 N -0.698 5.698 14 C 0.555 3.445 15 O -0.579 6.579 16 C -0.232 4.232 17 C 0.013 3.987 18 C -0.192 4.192 19 C 0.333 3.667 20 O -0.303 6.303 21 C 0.070 3.930 22 C -0.164 4.164 23 C -0.146 4.146 24 N -0.550 5.550 25 C 0.180 3.820 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.270 0.730 32 H 0.402 0.598 33 H 0.159 0.841 34 H 0.172 0.828 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.909 6.448 17.887 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.163 4.163 3 C 0.139 3.861 4 H 0.051 0.949 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.166 4.166 8 N -0.568 5.568 9 Si 0.748 3.252 10 H -0.201 1.201 11 H -0.205 1.205 12 H -0.176 1.176 13 N -0.347 5.347 14 C 0.343 3.657 15 O -0.461 6.461 16 C -0.238 4.238 17 C -0.012 4.012 18 C -0.213 4.213 19 C 0.154 3.846 20 O -0.210 6.210 21 C 0.015 3.985 22 C -0.222 4.222 23 C -0.202 4.202 24 N -0.273 5.273 25 C 0.023 3.977 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.239 0.761 33 H 0.176 0.824 34 H 0.190 0.810 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -12.924 6.589 17.904 23.043 hybrid contribution 0.078 -0.020 -1.348 1.351 sum -12.846 6.570 16.556 21.961 Atomic orbital electron populations 1.21777 0.95819 1.00333 1.01215 1.21994 0.95019 0.97864 1.01379 1.18946 0.93308 0.90352 0.83516 0.94936 1.21213 0.90248 1.50406 0.94632 0.92394 1.25583 0.95714 0.93940 1.01369 1.69979 1.11242 1.50316 1.25257 0.86099 0.80112 0.79276 0.79690 1.20101 1.20478 1.17637 1.46295 1.14976 1.55833 1.17566 1.18271 0.82046 0.78205 0.87229 1.90714 1.51685 1.61561 1.42120 1.20837 0.98485 1.08455 0.95987 1.21648 0.94270 0.88621 0.96671 1.21244 1.02059 1.06444 0.91524 1.20302 0.89255 0.88343 0.86662 1.86267 1.43559 1.71091 1.20111 1.22647 0.91249 0.97808 0.86839 1.22192 1.03555 0.96286 1.00119 1.21916 1.04136 0.95115 0.99082 1.67303 1.18814 1.15153 1.26079 1.22846 0.98682 0.90533 0.85675 0.93253 0.94601 0.92442 0.92951 0.91900 0.92065 0.76139 0.82376 0.81017 0.90136 0.91429 0.93660 0.89210 0.88513 0.92098 0.91072 0.80631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 8.53 71.98 0.61 -4.44 16 2 C -0.12 -5.13 5.59 30.60 0.17 -4.96 16 3 C 0.24 11.10 1.89 44.25 0.08 11.19 16 4 H 0.03 1.64 4.73 -2.39 -0.01 1.63 16 5 C -0.53 -27.89 9.05 25.60 0.23 -27.66 16 6 H 0.06 3.25 8.06 -2.91 -0.02 3.23 16 7 C 0.03 1.92 5.47 84.65 0.46 2.38 16 8 N -0.93 -54.89 13.96 21.45 0.30 -54.59 16 9 Si 0.92 44.11 26.99 68.60 1.85 45.96 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.25 -11.71 6.82 99.48 0.68 -11.03 16 13 N -0.70 -26.84 4.98 -449.21 -2.24 -29.08 16 14 C 0.55 20.44 6.37 86.72 0.55 21.00 16 15 O -0.58 -24.60 13.55 -3.95 -0.05 -24.65 16 16 C -0.23 -6.80 5.89 -20.00 -0.12 -6.91 16 17 C 0.01 0.34 9.70 22.70 0.22 0.56 16 18 C -0.19 -4.15 10.02 22.43 0.22 -3.93 16 19 C 0.33 7.97 7.46 84.83 0.63 8.61 16 20 O -0.30 -6.52 9.75 -88.02 -0.86 -7.38 16 21 C 0.07 1.22 3.11 30.60 0.10 1.32 16 22 C -0.16 -2.50 9.53 71.99 0.69 -1.82 16 23 C -0.15 -1.75 9.56 71.98 0.69 -1.06 16 24 N -0.55 -14.05 8.61 -307.81 -2.65 -16.70 16 25 C 0.18 4.73 10.71 85.03 0.91 5.64 16 26 H 0.05 1.85 5.63 -2.39 -0.01 1.84 16 27 H 0.03 1.44 7.88 -2.39 -0.02 1.42 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.40 13.55 6.65 -92.71 -0.62 12.93 16 33 H 0.16 3.76 7.73 -2.91 -0.02 3.74 16 34 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.08 1.60 6.97 -2.39 -0.02 1.58 16 36 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.18 4.06 6.41 -2.91 -0.02 4.04 16 Total: -1.00 -65.53 345.45 2.19 -63.34 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.38 Total: 23.19 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 5.46 Total: -0.09 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -4.59 Total: -100.37 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.91 Total: -32.03 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.85 Total: 45.96 kcal Total: -65.53 2.19 -63.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273814940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.895 kcal (2) G-P(sol) polarization free energy of solvation -65.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds