Wall clock time and date at job start Tue Mar 31 2020 06:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47726 * 2 1 4 4 H 1.09004 * 109.46709 * 54.99716 * 3 2 1 5 5 C 1.50700 * 109.47426 * 174.99963 * 3 2 1 6 6 H 1.07997 * 119.99650 * 120.00044 * 5 3 2 7 7 C 1.37873 * 119.99528 * 299.99793 * 5 3 2 8 8 N 1.31519 * 119.99557 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 120.00670 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46917 * 89.99949 * 9 7 5 11 11 H 1.48501 * 109.47388 * 209.99970 * 9 7 5 12 12 H 1.48499 * 109.46908 * 330.00208 * 9 7 5 13 13 N 1.46504 * 109.46650 * 295.00023 * 3 2 1 14 14 C 1.34780 * 120.00012 * 85.00117 * 13 3 2 15 15 O 1.21587 * 119.99805 * 359.97438 * 14 13 3 16 16 C 1.47612 * 120.00053 * 179.97438 * 14 13 3 17 17 C 1.40283 * 120.49979 * 179.97438 * 16 14 13 18 18 C 1.37958 * 118.35835 * 180.02562 * 17 16 14 19 19 C 1.39165 * 119.26144 * 359.97438 * 18 17 16 20 20 O 1.35501 * 119.52633 * 179.97438 * 19 18 17 21 21 C 1.42895 * 117.00085 * 180.02562 * 20 19 18 22 22 C 1.53006 * 109.47000 * 269.99788 * 21 20 19 23 23 C 1.52999 * 109.47162 * 150.00450 * 21 20 19 24 24 N 1.32406 * 120.94934 * 0.25826 * 19 18 17 25 25 C 1.31662 * 121.80169 * 359.47395 * 24 19 18 26 26 H 1.08999 * 109.47544 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47038 * 300.00576 * 1 2 3 28 28 H 1.09003 * 109.46904 * 60.00051 * 1 2 3 29 29 H 1.09001 * 109.47038 * 239.99424 * 2 1 3 30 30 H 1.09003 * 109.46904 * 119.99949 * 2 1 3 31 31 H 0.96999 * 119.99844 * 180.02562 * 8 7 5 32 32 H 0.96994 * 119.99781 * 264.99462 * 13 3 2 33 33 H 1.07998 * 120.81933 * 0.03492 * 17 16 14 34 34 H 1.07997 * 120.36723 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47411 * 29.99802 * 21 20 19 36 36 H 1.09001 * 109.47002 * 59.99969 * 22 21 20 37 37 H 1.08993 * 109.46955 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.47050 * 300.00235 * 22 21 20 39 39 H 1.09001 * 109.47362 * 180.02562 * 23 21 20 40 40 H 1.09002 * 109.46716 * 299.99480 * 23 21 20 41 41 H 1.09000 * 109.47486 * 59.99398 * 23 21 20 42 42 H 1.08002 * 119.69213 * 180.29058 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 5.4540 0.8802 1.3363 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3273 2.2634 11 1 3.7936 0.2347 3.8752 12 1 1.7877 0.8073 2.6386 13 7 1.6526 2.0974 -1.2519 14 6 0.4353 2.6644 -1.3670 15 8 -0.3414 2.6320 -0.4321 16 6 0.0450 3.3248 -2.6282 17 6 -1.2195 3.9179 -2.7597 18 6 -1.5383 4.5224 -3.9580 19 6 -0.6032 4.5250 -4.9886 20 8 -0.9109 5.1168 -6.1681 21 6 0.0886 5.0874 -7.1889 22 6 0.9795 6.3253 -7.0662 23 6 -0.5854 5.0783 -8.5624 24 7 0.5808 3.9525 -4.8352 25 6 0.9284 3.3689 -3.7073 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8770 0.4818 2.1130 32 1 2.2720 2.1230 -1.9978 33 1 -1.9259 3.9016 -1.9429 34 1 -2.5026 4.9893 -4.0945 35 1 0.6965 4.1897 -7.0765 36 1 1.4596 6.3318 -6.0877 37 1 1.7416 6.3030 -7.8451 38 1 0.3716 7.2230 -7.1786 39 1 0.1770 5.0554 -9.3411 40 1 -1.2200 4.1965 -8.6498 41 1 -1.1933 5.9761 -8.6748 42 1 1.9050 2.9165 -3.6178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273814944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:57 Heat of formation + Delta-G solvation = -42.679954 kcal Electronic energy + Delta-G solvation = -23245.745320 eV Core-core repulsion = 19805.312707 eV Total energy + Delta-G solvation = -3440.432613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90582 -39.37610 -37.99275 -35.38435 -33.57795 -32.57529 -32.48766 -31.76731 -30.05631 -27.57071 -27.46369 -24.34710 -24.08484 -22.66395 -21.47921 -20.84945 -19.76847 -18.71598 -17.89575 -16.96571 -16.24664 -15.91633 -15.57056 -15.00666 -14.89516 -14.53895 -14.40896 -14.14984 -13.68362 -13.27116 -13.23687 -12.98897 -12.66541 -12.62101 -12.58893 -12.39424 -12.14677 -11.91857 -11.79146 -11.19021 -11.11014 -10.98276 -10.92035 -10.64768 -10.02837 -9.94853 -9.90904 -9.56411 -9.27201 -9.17929 -8.78124 -8.61799 -8.10512 -6.22911 -4.25813 0.76886 1.12427 2.79117 3.17159 3.22572 3.34606 3.39239 3.83401 3.97515 4.07617 4.29994 4.58827 4.70132 4.79055 4.86184 4.94812 4.99814 5.10727 5.24171 5.26782 5.43672 5.48750 5.52935 5.56351 5.74141 5.86113 5.93577 5.94990 6.01140 6.09041 6.18012 6.27892 6.64278 6.68135 6.81552 6.93869 7.06988 7.21921 7.26403 7.47676 7.65258 8.10484 8.46871 8.72597 8.85575 9.37493 10.89060 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.003435 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.103139 B = 8148.485647 C = 8785.492195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.694 5.694 14 C 0.554 3.446 15 O -0.546 6.546 16 C -0.215 4.215 17 C 0.013 3.987 18 C -0.201 4.201 19 C 0.336 3.664 20 O -0.301 6.301 21 C 0.079 3.921 22 C -0.169 4.169 23 C -0.150 4.150 24 N -0.543 5.543 25 C 0.176 3.824 26 H 0.032 0.968 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.268 0.732 32 H 0.393 0.607 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.634 6.954 -16.219 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.140 3.860 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.342 5.342 14 C 0.339 3.661 15 O -0.426 6.426 16 C -0.221 4.221 17 C -0.013 4.013 18 C -0.221 4.221 19 C 0.158 3.842 20 O -0.208 6.208 21 C 0.023 3.977 22 C -0.226 4.226 23 C -0.207 4.207 24 N -0.267 5.267 25 C 0.019 3.981 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.227 0.773 33 H 0.171 0.829 34 H 0.163 0.837 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.650 7.030 -16.226 21.176 hybrid contribution -0.363 -0.554 0.985 1.187 sum -12.013 6.476 -15.241 20.458 Atomic orbital electron populations 1.21880 0.96921 0.99086 1.02267 1.22293 0.94391 0.99869 1.01206 1.19192 0.95723 0.88529 0.82584 0.93097 1.21036 0.88518 1.39949 1.07942 0.90133 1.24827 0.94869 0.95110 0.97654 1.69868 1.08692 1.44392 1.29838 0.86905 0.80986 0.79976 0.80894 1.20210 1.22170 1.18402 1.46117 1.14468 1.55512 1.18095 1.17834 0.82794 0.78971 0.86471 1.90748 1.51592 1.60370 1.39871 1.21086 0.97087 1.06714 0.97183 1.21535 0.94746 0.88969 0.96023 1.21012 1.01320 1.07311 0.92483 1.20012 0.89363 0.88586 0.86286 1.86256 1.42760 1.71580 1.20201 1.22390 0.89146 1.00412 0.85763 1.22218 0.99666 0.97604 1.03140 1.21909 1.01526 1.03094 0.94217 1.67246 1.17985 1.14790 1.26643 1.22724 0.98488 0.90918 0.86017 0.94937 0.92823 0.92950 0.92219 0.92691 0.92251 0.77251 0.82921 0.83744 0.88989 0.91792 0.91021 0.92070 0.90445 0.91835 0.91687 0.81710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.51 37.16 0.32 -2.54 16 2 C -0.14 -3.03 5.11 -26.73 -0.14 -3.16 16 3 C 0.24 5.62 1.83 -69.08 -0.13 5.49 16 4 H 0.05 1.30 6.64 -51.93 -0.34 0.96 16 5 C -0.54 -14.18 9.31 -34.44 -0.32 -14.50 16 6 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 9 Si 0.88 21.45 24.41 -169.99 -4.15 17.30 16 10 H -0.28 -6.49 6.83 56.52 0.39 -6.10 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.23 6.53 56.52 0.37 -5.87 16 13 N -0.69 -13.32 4.97 -55.94 -0.28 -13.60 16 14 C 0.55 10.18 6.34 -12.43 -0.08 10.10 16 15 O -0.55 -11.55 13.55 5.29 0.07 -11.48 16 16 C -0.21 -3.19 5.89 -104.82 -0.62 -3.81 16 17 C 0.01 0.17 9.70 -38.92 -0.38 -0.21 16 18 C -0.20 -2.35 10.02 -39.34 -0.39 -2.74 16 19 C 0.34 4.27 7.46 -16.96 -0.13 4.14 16 20 O -0.30 -3.49 9.75 -18.20 -0.18 -3.67 16 21 C 0.08 0.75 3.11 -26.73 -0.08 0.67 16 22 C -0.17 -1.46 9.53 37.16 0.35 -1.11 16 23 C -0.15 -1.06 9.56 37.16 0.36 -0.70 16 24 N -0.54 -7.19 8.61 -12.96 -0.11 -7.30 16 25 C 0.18 2.36 10.71 -17.14 -0.18 2.18 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 28 H 0.05 1.01 5.64 -51.93 -0.29 0.72 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 1.26 3.21 -51.93 -0.17 1.09 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.39 6.59 6.59 -40.82 -0.27 6.32 16 33 H 0.15 1.88 7.73 -52.49 -0.41 1.48 16 34 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.09 0.96 6.97 -51.93 -0.36 0.59 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.17 1.93 6.41 -52.49 -0.34 1.59 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -30.89 338.76 -6.27 -37.17 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.99 Total: 5.88 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.52 Total: -4.11 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.38 Total: -46.20 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.11 Total: -15.15 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.15 Total: 17.30 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.89 -6.27 -37.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273814944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.511 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds