Wall clock time and date at job start Tue Mar 31 2020 06:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47726 * 2 1 4 4 H 1.09004 * 109.46709 * 54.99716 * 3 2 1 5 5 C 1.50700 * 109.47426 * 174.99963 * 3 2 1 6 6 H 1.07997 * 119.99650 * 120.00044 * 5 3 2 7 7 C 1.37873 * 119.99528 * 299.99793 * 5 3 2 8 8 N 1.31519 * 119.99557 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 120.00670 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46917 * 89.99949 * 9 7 5 11 11 H 1.48501 * 109.47388 * 209.99970 * 9 7 5 12 12 H 1.48499 * 109.46908 * 330.00208 * 9 7 5 13 13 N 1.46504 * 109.46650 * 295.00023 * 3 2 1 14 14 C 1.34780 * 120.00012 * 85.00117 * 13 3 2 15 15 O 1.21587 * 119.99805 * 359.97438 * 14 13 3 16 16 C 1.47612 * 120.00053 * 179.97438 * 14 13 3 17 17 C 1.40283 * 120.49979 * 179.97438 * 16 14 13 18 18 C 1.37958 * 118.35835 * 180.02562 * 17 16 14 19 19 C 1.39165 * 119.26144 * 359.97438 * 18 17 16 20 20 O 1.35501 * 119.52633 * 179.97438 * 19 18 17 21 21 C 1.42895 * 117.00085 * 180.02562 * 20 19 18 22 22 C 1.53006 * 109.47000 * 269.99788 * 21 20 19 23 23 C 1.52999 * 109.47162 * 150.00450 * 21 20 19 24 24 N 1.32406 * 120.94934 * 0.25826 * 19 18 17 25 25 C 1.31662 * 121.80169 * 359.47395 * 24 19 18 26 26 H 1.08999 * 109.47544 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47038 * 300.00576 * 1 2 3 28 28 H 1.09003 * 109.46904 * 60.00051 * 1 2 3 29 29 H 1.09001 * 109.47038 * 239.99424 * 2 1 3 30 30 H 1.09003 * 109.46904 * 119.99949 * 2 1 3 31 31 H 0.96999 * 119.99844 * 180.02562 * 8 7 5 32 32 H 0.96994 * 119.99781 * 264.99462 * 13 3 2 33 33 H 1.07998 * 120.81933 * 0.03492 * 17 16 14 34 34 H 1.07997 * 120.36723 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47411 * 29.99802 * 21 20 19 36 36 H 1.09001 * 109.47002 * 59.99969 * 22 21 20 37 37 H 1.08993 * 109.46955 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.47050 * 300.00235 * 22 21 20 39 39 H 1.09001 * 109.47362 * 180.02562 * 23 21 20 40 40 H 1.09002 * 109.46716 * 299.99480 * 23 21 20 41 41 H 1.09000 * 109.47486 * 59.99398 * 23 21 20 42 42 H 1.08002 * 119.69213 * 180.29058 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 5.4540 0.8802 1.3363 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3273 2.2634 11 1 3.7936 0.2347 3.8752 12 1 1.7877 0.8073 2.6386 13 7 1.6526 2.0974 -1.2519 14 6 0.4353 2.6644 -1.3670 15 8 -0.3414 2.6320 -0.4321 16 6 0.0450 3.3248 -2.6282 17 6 -1.2195 3.9179 -2.7597 18 6 -1.5383 4.5224 -3.9580 19 6 -0.6032 4.5250 -4.9886 20 8 -0.9109 5.1168 -6.1681 21 6 0.0886 5.0874 -7.1889 22 6 0.9795 6.3253 -7.0662 23 6 -0.5854 5.0783 -8.5624 24 7 0.5808 3.9525 -4.8352 25 6 0.9284 3.3689 -3.7073 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8770 0.4818 2.1130 32 1 2.2720 2.1230 -1.9978 33 1 -1.9259 3.9016 -1.9429 34 1 -2.5026 4.9893 -4.0945 35 1 0.6965 4.1897 -7.0765 36 1 1.4596 6.3318 -6.0877 37 1 1.7416 6.3030 -7.8451 38 1 0.3716 7.2230 -7.1786 39 1 0.1770 5.0554 -9.3411 40 1 -1.2200 4.1965 -8.6498 41 1 -1.1933 5.9761 -8.6748 42 1 1.9050 2.9165 -3.6178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273814944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:57 Heat of formation + Delta-G solvation = -64.360517 kcal Electronic energy + Delta-G solvation = -23246.685460 eV Core-core repulsion = 19805.312707 eV Total energy + Delta-G solvation = -3441.372753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.95512 -40.71453 -39.06561 -37.10385 -34.54834 -34.25545 -33.61565 -33.36357 -31.24122 -29.32368 -28.16127 -25.59488 -25.09075 -24.42348 -22.68325 -21.98295 -21.38223 -19.73130 -19.42782 -18.09393 -17.99783 -17.25007 -16.83518 -16.35576 -16.19111 -15.85366 -15.46609 -15.22025 -15.10662 -14.78768 -14.36263 -14.21144 -13.95242 -13.82752 -13.71000 -13.55001 -13.27480 -13.16408 -12.96098 -12.84768 -12.75547 -12.39026 -11.91983 -11.84376 -11.75695 -11.40150 -11.23287 -11.06979 -11.04020 -10.84904 -10.55581 -9.87268 -9.55827 -8.36949 -6.42626 -0.32765 0.12475 1.28601 1.36884 1.46467 1.89844 1.91986 2.27257 2.37800 2.79093 2.99300 3.10271 3.70928 3.81985 3.91067 3.98017 4.02970 4.08599 4.25273 4.28960 4.33930 4.47398 4.56372 4.65388 4.71816 4.83830 4.85022 4.86810 4.94270 5.02237 5.06919 5.14317 5.21475 5.25195 5.27319 5.32903 5.41093 5.53352 5.63243 6.14284 6.14983 6.59088 6.63485 6.83476 7.19389 7.39407 8.78130 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.003435 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.103139 B = 8148.485647 C = 8785.492195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.251 3.749 4 H 0.026 0.974 5 C -0.534 4.534 6 H 0.058 0.942 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.935 3.065 10 H -0.259 1.259 11 H -0.295 1.295 12 H -0.258 1.258 13 N -0.695 5.695 14 C 0.558 3.442 15 O -0.576 6.576 16 C -0.232 4.232 17 C 0.015 3.985 18 C -0.192 4.192 19 C 0.334 3.666 20 O -0.303 6.303 21 C 0.071 3.929 22 C -0.165 4.165 23 C -0.145 4.145 24 N -0.550 5.550 25 C 0.181 3.819 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.270 0.730 32 H 0.404 0.596 33 H 0.159 0.841 34 H 0.173 0.827 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.413 7.044 -17.796 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.177 4.177 3 C 0.146 3.854 4 H 0.044 0.956 5 C -0.572 4.572 6 H 0.076 0.924 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.763 3.237 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.183 1.183 13 N -0.344 5.344 14 C 0.346 3.654 15 O -0.457 6.457 16 C -0.237 4.237 17 C -0.011 4.011 18 C -0.213 4.213 19 C 0.155 3.845 20 O -0.210 6.210 21 C 0.015 3.985 22 C -0.223 4.223 23 C -0.202 4.202 24 N -0.274 5.274 25 C 0.023 3.977 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.240 0.760 33 H 0.177 0.823 34 H 0.190 0.810 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.443 7.131 -17.848 23.455 hybrid contribution 0.194 -0.462 1.315 1.407 sum -13.249 6.669 -16.533 22.212 Atomic orbital electron populations 1.21766 0.95165 1.00590 1.01637 1.22218 0.95901 0.98388 1.01153 1.18827 0.93284 0.89713 0.83590 0.95611 1.21284 0.90288 1.38599 1.07025 0.92417 1.25537 0.95716 0.95876 0.99835 1.69977 1.10290 1.46114 1.30862 0.86049 0.79400 0.80001 0.78277 1.18524 1.22242 1.18258 1.45927 1.15398 1.55845 1.17231 1.18226 0.81819 0.78114 0.87277 1.90727 1.52287 1.61446 1.41278 1.20794 0.98504 1.08486 0.95954 1.21650 0.94093 0.88555 0.96790 1.21247 1.02187 1.06425 0.91398 1.20308 0.89281 0.87999 0.86917 1.86269 1.43522 1.71118 1.20107 1.22644 0.89169 1.00305 0.86363 1.22200 0.99957 0.97479 1.02630 1.21914 1.02011 1.03308 0.92979 1.67301 1.18557 1.15136 1.26376 1.22844 0.98670 0.90538 0.85660 0.92296 0.94245 0.92801 0.91229 0.93706 0.92098 0.75968 0.82298 0.80977 0.90021 0.93803 0.89204 0.91463 0.88524 0.91958 0.91128 0.80654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 8.51 71.98 0.61 -4.47 16 2 C -0.14 -5.85 5.11 30.59 0.16 -5.69 16 3 C 0.25 11.59 1.83 44.25 0.08 11.67 16 4 H 0.03 1.34 6.64 -2.39 -0.02 1.32 16 5 C -0.53 -28.66 9.31 25.60 0.24 -28.43 16 6 H 0.06 3.29 7.98 -2.91 -0.02 3.26 16 7 C 0.03 1.69 5.45 84.65 0.46 2.15 16 8 N -0.93 -55.64 13.96 21.45 0.30 -55.34 16 9 Si 0.94 44.32 24.41 68.60 1.67 45.99 16 10 H -0.26 -11.56 6.83 99.48 0.68 -10.88 16 11 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 12 H -0.26 -12.08 6.53 99.48 0.65 -11.43 16 13 N -0.70 -26.60 4.97 -449.17 -2.23 -28.84 16 14 C 0.56 20.29 6.34 86.72 0.55 20.84 16 15 O -0.58 -24.20 13.55 -3.99 -0.05 -24.25 16 16 C -0.23 -6.66 5.89 -19.99 -0.12 -6.78 16 17 C 0.01 0.36 9.70 22.70 0.22 0.58 16 18 C -0.19 -4.06 10.02 22.43 0.22 -3.84 16 19 C 0.33 7.86 7.46 84.83 0.63 8.49 16 20 O -0.30 -6.42 9.75 -88.03 -0.86 -7.28 16 21 C 0.07 1.22 3.11 30.60 0.10 1.31 16 22 C -0.17 -2.58 9.53 71.98 0.69 -1.89 16 23 C -0.15 -1.68 9.56 71.98 0.69 -0.99 16 24 N -0.55 -13.85 8.61 -307.81 -2.65 -16.50 16 25 C 0.18 4.66 10.71 85.03 0.91 5.58 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.04 1.59 7.84 -2.39 -0.02 1.57 16 28 H 0.05 2.01 5.64 -2.39 -0.01 1.99 16 29 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.04 1.99 3.21 -2.39 -0.01 1.98 16 31 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.40 13.52 6.59 -92.71 -0.61 12.91 16 33 H 0.16 3.68 7.73 -2.91 -0.02 3.66 16 34 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.08 1.58 6.97 -2.39 -0.02 1.56 16 36 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.18 3.99 6.41 -2.91 -0.02 3.97 16 Total: -1.00 -66.31 338.76 1.96 -64.35 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.34 Total: 23.35 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 5.44 Total: -1.48 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -4.58 Total: -100.68 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.91 Total: -31.53 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.67 Total: 45.99 kcal Total: -66.31 1.96 -64.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273814944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.009 kcal (2) G-P(sol) polarization free energy of solvation -66.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds