Wall clock time and date at job start Tue Mar 31 2020 06:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54946 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55318 * 3 2 1 6 6 H 1.08004 * 120.00150 * 245.60461 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48491 * 109.47220 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47213 * 300.00511 * 9 7 5 12 12 H 1.48499 * 109.47015 * 60.00212 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55540 * 3 2 1 14 14 C 1.34771 * 119.99789 * 274.99899 * 13 3 2 15 15 O 1.21514 * 120.00404 * 359.97438 * 14 13 3 16 16 C 1.48163 * 119.99845 * 179.97438 * 14 13 3 17 17 C 1.39959 * 120.89430 * 0.02562 * 16 14 13 18 18 C 1.37973 * 119.13976 * 179.97438 * 17 16 14 19 19 N 1.31914 * 120.97612 * 0.02562 * 18 17 16 20 20 C 1.32173 * 121.96851 * 359.97390 * 19 18 17 21 21 O 1.35689 * 119.62347 * 180.02562 * 20 19 18 22 22 C 1.42901 * 116.99834 * 0.02562 * 21 20 19 23 23 C 1.52999 * 109.46560 * 89.99933 * 22 21 20 24 24 C 1.52993 * 109.47187 * 210.00006 * 22 21 20 25 25 C 1.38900 * 120.75545 * 359.72261 * 20 19 18 26 26 H 1.08998 * 109.47621 * 60.00436 * 1 2 3 27 27 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47210 * 299.99485 * 1 2 3 29 29 H 1.08998 * 109.47210 * 240.00515 * 2 1 3 30 30 H 1.09000 * 109.47548 * 120.00343 * 2 1 3 31 31 H 0.97001 * 119.99410 * 354.82986 * 8 7 5 32 32 H 0.96996 * 119.99999 * 94.99386 * 13 3 2 33 33 H 1.08007 * 120.43168 * 0.02562 * 17 16 14 34 34 H 1.08000 * 119.51575 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.47258 * 330.00579 * 22 21 20 36 36 H 1.08998 * 109.47576 * 299.99571 * 23 22 21 37 37 H 1.09005 * 109.47186 * 60.00314 * 23 22 21 38 38 H 1.09000 * 109.46757 * 179.97438 * 23 22 21 39 39 H 1.09002 * 109.47243 * 60.00454 * 24 22 21 40 40 H 1.09000 * 109.47257 * 180.02562 * 24 22 21 41 41 H 1.09005 * 109.47254 * 300.00112 * 24 22 21 42 42 H 1.07995 * 120.52678 * 180.28086 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8361 5 6 3.5406 1.4448 -0.1375 6 1 4.1567 1.8042 0.6735 7 6 4.1272 0.9880 -1.2987 8 7 5.4072 0.6862 -1.3142 9 14 3.1039 0.7978 -2.8499 10 1 3.9632 0.2936 -3.9510 11 1 2.0023 -0.1665 -2.6010 12 1 2.5326 2.1145 -3.2305 13 7 1.6638 2.0934 1.2574 14 6 0.4476 2.6599 1.3854 15 8 -0.3368 2.6312 0.4578 16 6 0.0670 3.3177 2.6573 17 6 0.9559 3.3622 3.7374 18 6 0.5640 3.9846 4.9048 19 7 -0.6304 4.5337 5.0135 20 6 -1.5020 4.5157 4.0200 21 8 -2.7176 5.0958 4.1837 22 6 -2.9814 5.7032 5.4500 23 6 -2.5451 7.1692 5.4131 24 6 -4.4793 5.6243 5.7514 25 6 -1.1854 3.9152 2.8082 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.9548 0.8552 -0.5316 32 1 2.2900 2.1166 1.9977 33 1 1.9362 2.9158 3.6580 34 1 1.2450 4.0221 5.7423 35 1 -2.4262 5.1784 6.2274 36 1 -1.4780 7.2255 5.1985 37 1 -3.1003 7.6941 4.6357 38 1 -2.7467 7.6326 6.3789 39 1 -4.7901 4.5798 5.7776 40 1 -4.6806 6.0880 6.7171 41 1 -5.0345 6.1492 4.9739 42 1 -1.8987 3.9065 1.9974 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273921832.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:41 Heat of formation + Delta-G solvation = -48.953239 kcal Electronic energy + Delta-G solvation = -23250.097222 eV Core-core repulsion = 19809.392579 eV Total energy + Delta-G solvation = -3440.704643 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88670 -39.36876 -38.05591 -35.38959 -33.54161 -32.96107 -32.32798 -31.28756 -30.13126 -27.54424 -27.37585 -24.84947 -23.41026 -22.46820 -21.96461 -20.51968 -19.71342 -18.85594 -17.59907 -17.08811 -16.29038 -15.85855 -15.61816 -15.37405 -14.97908 -14.55950 -14.32048 -14.01283 -13.81252 -13.40380 -13.26972 -12.71040 -12.59641 -12.56657 -12.53969 -12.33223 -12.15880 -11.98174 -11.77486 -11.18498 -11.01763 -10.95188 -10.74637 -10.48354 -10.01443 -9.91617 -9.87146 -9.61424 -9.35437 -9.09970 -8.61917 -8.39166 -8.20872 -6.62967 -4.27571 0.75501 1.06997 2.79119 3.18215 3.35809 3.42413 3.56110 3.75937 3.91473 4.14207 4.38038 4.60582 4.71684 4.75037 4.93374 4.96892 5.05091 5.07917 5.12300 5.26600 5.45256 5.50490 5.55993 5.64308 5.74854 5.86543 5.92470 6.02907 6.05657 6.06810 6.22174 6.26508 6.63606 6.75307 6.87512 6.98514 7.14033 7.27156 7.31456 7.56085 7.68671 8.17584 8.32552 8.60756 8.82389 9.41673 10.78017 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.031108 B = 0.003346 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.860077 B = 8366.986962 C = 8739.424899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.247 3.753 4 H 0.044 0.956 5 C -0.618 4.618 6 H 0.062 0.938 7 C 0.040 3.960 8 N -0.897 5.897 9 Si 1.039 2.961 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.688 5.688 14 C 0.542 3.458 15 O -0.535 6.535 16 C -0.042 4.042 17 C -0.183 4.183 18 C 0.135 3.865 19 N -0.533 5.533 20 C 0.318 3.682 21 O -0.300 6.300 22 C 0.081 3.919 23 C -0.169 4.169 24 C -0.151 4.151 25 C -0.137 4.137 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.269 0.731 32 H 0.394 0.606 33 H 0.143 0.857 34 H 0.164 0.836 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.622 7.902 14.811 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.062 0.938 5 C -0.656 4.656 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.529 5.529 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.335 5.335 14 C 0.326 3.674 15 O -0.414 6.414 16 C -0.053 4.053 17 C -0.204 4.204 18 C -0.020 4.020 19 N -0.257 5.257 20 C 0.139 3.861 21 O -0.208 6.208 22 C 0.025 3.975 23 C -0.226 4.226 24 C -0.208 4.208 25 C -0.159 4.159 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.228 0.772 33 H 0.161 0.839 34 H 0.181 0.819 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.535 7.765 13.129 21.070 hybrid contribution 0.720 0.252 1.523 1.704 sum -13.815 8.017 14.652 21.675 Atomic orbital electron populations 1.21896 0.97341 0.99053 1.01941 1.22371 0.93835 0.99584 1.02052 1.19141 0.96019 0.88658 0.81834 0.93806 1.22071 0.89497 1.49795 1.04265 0.91982 1.25681 0.97534 0.92277 1.01175 1.70883 1.07047 1.40701 1.34308 0.84124 0.75520 0.77792 0.75871 1.20874 1.19428 1.20543 1.46211 1.13991 1.54981 1.18366 1.18063 0.83218 0.79622 0.86468 1.90751 1.50886 1.59589 1.40184 1.20473 0.93582 0.96225 0.94997 1.22234 1.01238 1.02931 0.93994 1.22318 0.91110 0.91788 0.96812 1.67097 1.04658 1.22401 1.31544 1.19625 0.85614 0.90981 0.89867 1.86318 1.28701 1.68583 1.37201 1.22334 0.96919 0.93619 0.84652 1.22218 1.02378 0.95479 1.02529 1.21909 0.93683 1.03044 1.02173 1.21144 0.97691 1.00024 0.97047 0.92915 0.94911 0.93401 0.91071 0.92956 0.92068 0.77192 0.83932 0.81905 0.89267 0.91945 0.91973 0.91182 0.91791 0.90559 0.91600 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.52 37.15 0.32 -2.58 16 2 C -0.14 -3.05 5.28 -26.73 -0.14 -3.19 16 3 C 0.25 5.73 1.82 -69.08 -0.13 5.61 16 4 H 0.04 1.11 6.25 -51.93 -0.32 0.79 16 5 C -0.62 -16.26 9.01 -34.44 -0.31 -16.58 16 6 H 0.06 1.70 7.96 -52.48 -0.42 1.28 16 7 C 0.04 1.11 5.32 -17.82 -0.09 1.01 16 8 N -0.90 -26.22 13.70 55.43 0.76 -25.46 16 9 Si 1.04 24.64 26.27 -169.99 -4.47 20.17 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.27 -5.92 5.67 56.52 0.32 -5.60 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.69 -13.50 4.99 -55.78 -0.28 -13.77 16 14 C 0.54 10.30 6.39 -12.19 -0.08 10.22 16 15 O -0.54 -11.67 13.58 5.35 0.07 -11.60 16 16 C -0.04 -0.65 5.91 -104.68 -0.62 -1.27 16 17 C -0.18 -2.30 9.61 -39.03 -0.38 -2.67 16 18 C 0.13 1.51 11.17 -17.61 -0.20 1.31 16 19 N -0.53 -6.78 8.61 -13.38 -0.12 -6.90 16 20 C 0.32 4.41 7.45 -17.16 -0.13 4.28 16 21 O -0.30 -3.88 9.76 -18.77 -0.18 -4.06 16 22 C 0.08 0.80 3.11 -26.74 -0.08 0.72 16 23 C -0.17 -1.48 9.53 37.16 0.35 -1.13 16 24 C -0.15 -1.14 9.56 37.15 0.36 -0.78 16 25 C -0.14 -2.07 9.61 -38.84 -0.37 -2.44 16 26 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.95 5.63 -51.93 -0.29 0.66 16 29 H 0.07 1.62 4.74 -51.93 -0.25 1.38 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.27 7.77 8.73 -40.82 -0.36 7.42 16 32 H 0.39 6.79 6.66 -40.82 -0.27 6.51 16 33 H 0.14 1.54 6.53 -52.48 -0.34 1.20 16 34 H 0.16 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.09 0.91 6.98 -51.93 -0.36 0.55 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.15 2.33 7.74 -52.49 -0.41 1.92 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -30.73 341.37 -6.68 -37.40 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.11 Total: 6.56 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.50 Total: -7.49 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.37 Total: -46.13 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.11 Total: -15.66 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -4.47 Total: 20.17 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.73 -6.68 -37.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273921832.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.550 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds