Wall clock time and date at job start Tue Mar 31 2020 06:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54946 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55318 * 3 2 1 6 6 H 1.08004 * 120.00150 * 245.60461 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48491 * 109.47220 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47213 * 300.00511 * 9 7 5 12 12 H 1.48499 * 109.47015 * 60.00212 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55540 * 3 2 1 14 14 C 1.34771 * 119.99789 * 274.99899 * 13 3 2 15 15 O 1.21514 * 120.00404 * 359.97438 * 14 13 3 16 16 C 1.48163 * 119.99845 * 179.97438 * 14 13 3 17 17 C 1.39959 * 120.89430 * 0.02562 * 16 14 13 18 18 C 1.37973 * 119.13976 * 179.97438 * 17 16 14 19 19 N 1.31914 * 120.97612 * 0.02562 * 18 17 16 20 20 C 1.32173 * 121.96851 * 359.97390 * 19 18 17 21 21 O 1.35689 * 119.62347 * 180.02562 * 20 19 18 22 22 C 1.42901 * 116.99834 * 0.02562 * 21 20 19 23 23 C 1.52999 * 109.46560 * 89.99933 * 22 21 20 24 24 C 1.52993 * 109.47187 * 210.00006 * 22 21 20 25 25 C 1.38900 * 120.75545 * 359.72261 * 20 19 18 26 26 H 1.08998 * 109.47621 * 60.00436 * 1 2 3 27 27 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47210 * 299.99485 * 1 2 3 29 29 H 1.08998 * 109.47210 * 240.00515 * 2 1 3 30 30 H 1.09000 * 109.47548 * 120.00343 * 2 1 3 31 31 H 0.97001 * 119.99410 * 354.82986 * 8 7 5 32 32 H 0.96996 * 119.99999 * 94.99386 * 13 3 2 33 33 H 1.08007 * 120.43168 * 0.02562 * 17 16 14 34 34 H 1.08000 * 119.51575 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.47258 * 330.00579 * 22 21 20 36 36 H 1.08998 * 109.47576 * 299.99571 * 23 22 21 37 37 H 1.09005 * 109.47186 * 60.00314 * 23 22 21 38 38 H 1.09000 * 109.46757 * 179.97438 * 23 22 21 39 39 H 1.09002 * 109.47243 * 60.00454 * 24 22 21 40 40 H 1.09000 * 109.47257 * 180.02562 * 24 22 21 41 41 H 1.09005 * 109.47254 * 300.00112 * 24 22 21 42 42 H 1.07995 * 120.52678 * 180.28086 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8361 5 6 3.5406 1.4448 -0.1375 6 1 4.1567 1.8042 0.6735 7 6 4.1272 0.9880 -1.2987 8 7 5.4072 0.6862 -1.3142 9 14 3.1039 0.7978 -2.8499 10 1 3.9632 0.2936 -3.9510 11 1 2.0023 -0.1665 -2.6010 12 1 2.5326 2.1145 -3.2305 13 7 1.6638 2.0934 1.2574 14 6 0.4476 2.6599 1.3854 15 8 -0.3368 2.6312 0.4578 16 6 0.0670 3.3177 2.6573 17 6 0.9559 3.3622 3.7374 18 6 0.5640 3.9846 4.9048 19 7 -0.6304 4.5337 5.0135 20 6 -1.5020 4.5157 4.0200 21 8 -2.7176 5.0958 4.1837 22 6 -2.9814 5.7032 5.4500 23 6 -2.5451 7.1692 5.4131 24 6 -4.4793 5.6243 5.7514 25 6 -1.1854 3.9152 2.8082 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.9548 0.8552 -0.5316 32 1 2.2900 2.1166 1.9977 33 1 1.9362 2.9158 3.6580 34 1 1.2450 4.0221 5.7423 35 1 -2.4262 5.1784 6.2274 36 1 -1.4780 7.2255 5.1985 37 1 -3.1003 7.6941 4.6357 38 1 -2.7467 7.6326 6.3789 39 1 -4.7901 4.5798 5.7776 40 1 -4.6806 6.0880 6.7171 41 1 -5.0345 6.1492 4.9739 42 1 -1.8987 3.9065 1.9974 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273921832.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:40 Heat of formation + Delta-G solvation = -70.288021 kcal Electronic energy + Delta-G solvation = -23251.022368 eV Core-core repulsion = 19809.392579 eV Total energy + Delta-G solvation = -3441.629789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.97310 -40.76283 -39.10992 -37.15077 -34.65220 -34.25822 -34.00203 -32.78436 -31.16468 -29.22472 -28.16682 -26.11204 -24.48205 -24.21210 -23.12520 -21.82922 -21.31869 -20.28041 -19.25536 -18.26329 -17.56891 -17.01460 -16.83322 -16.66973 -16.40821 -15.74795 -15.45438 -15.25487 -14.93886 -14.87024 -14.54831 -14.40200 -14.19177 -14.03897 -13.62655 -13.28220 -13.19129 -13.02664 -12.86888 -12.70876 -12.50807 -12.31698 -11.94524 -11.80595 -11.78554 -11.45678 -11.24607 -11.07137 -11.01606 -10.66211 -10.48516 -9.90967 -9.60894 -8.80063 -6.45030 -0.40734 0.05988 1.45947 1.50889 1.68985 1.81864 1.85248 2.34610 2.41604 2.75278 3.01080 3.22326 3.56792 3.86108 3.89122 3.97382 4.02453 4.03940 4.27757 4.30355 4.38444 4.50279 4.58623 4.69350 4.69579 4.81790 4.83820 4.84780 4.88948 4.99374 5.09300 5.17573 5.19116 5.26060 5.26867 5.33137 5.52570 5.56848 5.65058 6.00613 6.20441 6.51465 6.67577 6.70951 7.20497 7.32650 8.60286 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.031108 B = 0.003346 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.860077 B = 8366.986962 C = 8739.424899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 C 0.251 3.749 4 H 0.025 0.975 5 C -0.613 4.613 6 H 0.044 0.956 7 C -0.003 4.003 8 N -0.927 5.927 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.243 1.243 12 H -0.275 1.275 13 N -0.687 5.687 14 C 0.544 3.456 15 O -0.567 6.567 16 C -0.056 4.056 17 C -0.177 4.177 18 C 0.147 3.853 19 N -0.530 5.530 20 C 0.316 3.684 21 O -0.314 6.314 22 C 0.073 3.927 23 C -0.164 4.164 24 C -0.147 4.147 25 C -0.153 4.153 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.259 0.741 32 H 0.405 0.595 33 H 0.161 0.839 34 H 0.207 0.793 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.823 8.241 16.797 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.175 4.175 3 C 0.146 3.854 4 H 0.042 0.958 5 C -0.651 4.651 6 H 0.062 0.938 7 C -0.204 4.204 8 N -0.562 5.562 9 Si 0.891 3.109 10 H -0.209 1.209 11 H -0.167 1.167 12 H -0.201 1.201 13 N -0.336 5.336 14 C 0.331 3.669 15 O -0.448 6.448 16 C -0.067 4.067 17 C -0.198 4.198 18 C -0.008 4.008 19 N -0.254 5.254 20 C 0.137 3.863 21 O -0.222 6.222 22 C 0.017 3.983 23 C -0.222 4.222 24 C -0.204 4.204 25 C -0.175 4.175 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.242 0.758 33 H 0.179 0.821 34 H 0.224 0.776 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.758 8.116 15.157 23.322 hybrid contribution 1.091 0.240 1.052 1.535 sum -14.666 8.356 16.209 23.402 Atomic orbital electron populations 1.21783 0.95702 1.00496 1.01299 1.22264 0.95200 0.98162 1.01893 1.18850 0.93784 0.89799 0.82932 0.95768 1.22254 0.91188 1.48234 1.03375 0.93773 1.26745 0.97688 0.92104 1.03848 1.70981 1.08015 1.43151 1.34082 0.83760 0.75259 0.78648 0.73268 1.20920 1.16714 1.20088 1.45990 1.14802 1.55228 1.17617 1.18481 0.82311 0.78793 0.87356 1.90726 1.51672 1.60661 1.41729 1.20164 0.94688 0.97578 0.94282 1.22463 1.01353 1.02561 0.93414 1.23016 0.90867 0.89633 0.97304 1.67239 1.05028 1.22232 1.30919 1.19608 0.86200 0.90880 0.89605 1.86312 1.28288 1.68595 1.38979 1.22644 0.98432 0.93939 0.83283 1.22198 1.01206 0.94904 1.03857 1.21931 0.91883 1.03123 1.03461 1.21067 0.97600 1.01232 0.97575 0.94019 0.92346 0.93632 0.91973 0.92358 0.93143 0.75835 0.82104 0.77646 0.89481 0.93519 0.92102 0.88780 0.92175 0.88059 0.91648 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 8.52 71.98 0.61 -4.60 16 2 C -0.14 -5.81 5.28 30.59 0.16 -5.64 16 3 C 0.25 11.58 1.82 44.25 0.08 11.66 16 4 H 0.02 1.24 6.25 -2.39 -0.01 1.22 16 5 C -0.61 -32.40 9.01 25.60 0.23 -32.17 16 6 H 0.04 2.44 7.96 -2.91 -0.02 2.42 16 7 C 0.00 -0.15 5.32 84.66 0.45 0.30 16 8 N -0.93 -55.05 13.70 21.45 0.29 -54.76 16 9 Si 1.07 49.51 26.27 68.60 1.80 51.31 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.24 -10.19 5.67 99.48 0.56 -9.62 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 13 N -0.69 -26.60 4.99 -448.68 -2.24 -28.84 16 14 C 0.54 20.55 6.39 86.88 0.56 21.10 16 15 O -0.57 -24.94 13.58 -3.76 -0.05 -24.99 16 16 C -0.06 -1.71 5.91 -19.90 -0.12 -1.83 16 17 C -0.18 -4.04 9.61 22.62 0.22 -3.82 16 18 C 0.15 2.82 11.17 84.62 0.94 3.76 16 19 N -0.53 -12.28 8.61 -309.13 -2.66 -14.94 16 20 C 0.32 8.45 7.45 84.80 0.63 9.08 16 21 O -0.31 -7.88 9.76 -90.07 -0.88 -8.76 16 22 C 0.07 1.31 3.11 30.59 0.10 1.41 16 23 C -0.16 -2.58 9.53 71.98 0.69 -1.90 16 24 C -0.15 -1.93 9.56 71.98 0.69 -1.24 16 25 C -0.15 -4.60 9.61 22.75 0.22 -4.38 16 26 H 0.04 1.68 7.88 -2.39 -0.02 1.66 16 27 H 0.06 1.92 8.14 -2.38 -0.02 1.91 16 28 H 0.04 1.76 5.63 -2.39 -0.01 1.74 16 29 H 0.06 2.74 4.74 -2.39 -0.01 2.73 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.26 15.35 8.73 -92.71 -0.81 14.54 16 32 H 0.41 13.57 6.66 -92.71 -0.62 12.95 16 33 H 0.16 3.02 6.53 -2.91 -0.02 3.00 16 34 H 0.21 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.09 1.61 6.98 -2.39 -0.02 1.59 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.14 4.44 7.74 -2.91 -0.02 4.42 16 Total: -1.00 -67.04 341.37 1.95 -65.09 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.23 Total: 24.14 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 5.46 Total: -8.26 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -4.61 Total: -98.54 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.93 Total: -33.74 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 1.80 Total: 51.31 kcal Total: -67.04 1.95 -65.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273921832.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.199 kcal (2) G-P(sol) polarization free energy of solvation -67.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds