Wall clock time and date at job start Tue Mar 31 2020 06:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47196 * 2 1 4 4 C 1.35434 * 116.99888 * 179.97438 * 3 2 1 5 5 N 1.32229 * 119.79834 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.80177 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.40825 * 179.97438 * 6 5 4 8 8 C 1.38353 * 121.18321 * 0.27319 * 6 5 4 9 9 C 1.38340 * 119.45528 * 359.45688 * 8 6 5 10 10 C 1.39982 * 118.34940 * 0.52740 * 9 8 6 11 11 C 1.47531 * 120.59660 * 179.71351 * 10 9 8 12 12 O 1.21586 * 120.00164 * 180.02562 * 11 10 9 13 13 N 1.34781 * 119.99573 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99369 * 180.02562 * 13 11 10 15 15 H 1.08992 * 109.47050 * 34.99836 * 14 13 11 16 16 C 1.50703 * 109.46731 * 155.00451 * 14 13 11 17 17 H 1.08002 * 119.99853 * 359.97438 * 16 14 13 18 18 C 1.37877 * 119.99891 * 179.97438 * 16 14 13 19 19 N 1.31517 * 119.99799 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 119.99877 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47255 * 60.00125 * 20 18 16 22 22 H 1.48511 * 109.47149 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47426 * 299.99855 * 20 18 16 24 24 C 1.53007 * 109.46979 * 274.99663 * 14 13 11 25 25 C 1.53005 * 109.46684 * 65.00262 * 24 14 13 26 26 H 1.09003 * 109.46701 * 300.00024 * 1 2 3 27 27 H 1.09003 * 109.47112 * 59.99403 * 1 2 3 28 28 H 1.08998 * 109.47777 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46701 * 239.99976 * 2 1 3 30 30 H 1.08996 * 109.46757 * 120.00487 * 2 1 3 31 31 H 1.09002 * 109.47152 * 89.99927 * 7 6 5 32 32 H 1.09001 * 109.46980 * 330.00028 * 7 6 5 33 33 H 1.09004 * 109.47113 * 210.00009 * 7 6 5 34 34 H 1.08000 * 120.26943 * 179.72714 * 8 6 5 35 35 H 1.08002 * 120.82121 * 180.26677 * 9 8 6 36 36 H 0.96999 * 120.00030 * 0.02562 * 13 11 10 37 37 H 0.96998 * 119.99968 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.46739 * 185.00337 * 24 14 13 39 39 H 1.08996 * 109.47078 * 305.00452 * 24 14 13 40 40 H 1.09003 * 109.46841 * 60.00111 * 25 24 14 41 41 H 1.08997 * 109.46375 * 179.97438 * 25 24 14 42 42 H 1.08994 * 109.47028 * 299.99779 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4731 0.0005 6 6 5.4635 0.6001 0.0005 7 6 6.3264 -0.6355 0.0011 8 6 6.0626 1.8471 0.0062 9 6 5.2714 2.9820 0.0006 10 6 3.8807 2.8227 0.0005 11 6 2.9902 3.9989 0.0010 12 8 1.7837 3.8480 0.0014 13 7 3.5141 5.2407 0.0009 14 6 2.6297 6.4087 0.0019 15 1 1.7398 6.1901 0.5920 16 6 3.3537 7.5864 0.6021 17 1 4.3706 7.4757 0.9485 18 6 2.7178 8.8050 0.7089 19 7 1.4792 8.9396 0.2875 20 14 3.6149 10.2645 1.4534 21 1 4.8280 10.5621 0.6503 22 1 2.7185 11.4486 1.4544 23 1 4.0111 9.9432 2.8481 24 6 2.2205 6.7399 -1.4347 25 6 1.3785 5.5951 -2.0018 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 6.5345 -0.9338 -1.0264 32 1 5.8048 -1.4427 0.5153 33 1 7.2641 -0.4235 0.5149 34 1 7.1391 1.9339 0.0106 35 1 5.7158 3.9663 0.0005 36 1 4.4766 5.3610 0.0002 37 1 1.0319 9.7971 0.3624 38 1 1.6358 7.6598 -1.4431 39 1 3.1135 6.8713 -2.0457 40 1 0.4855 5.4636 -1.3908 41 1 1.0867 5.8312 -3.0251 42 1 1.9632 4.6753 -1.9934 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276885680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:00 Heat of formation + Delta-G solvation = -49.709420 kcal Electronic energy + Delta-G solvation = -23785.457058 eV Core-core repulsion = 20344.719624 eV Total energy + Delta-G solvation = -3440.737434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.76999 -38.57764 -38.04085 -34.96682 -33.29677 -32.41226 -31.99523 -30.88720 -30.68686 -27.98895 -26.75200 -23.89587 -23.31996 -22.64329 -22.19631 -20.47382 -19.27572 -18.30524 -17.55034 -16.58074 -16.22773 -15.84933 -15.12270 -14.59808 -14.52564 -14.36387 -14.17427 -13.93743 -13.69472 -13.09320 -12.84453 -12.64187 -12.57261 -12.45094 -12.20375 -12.05700 -11.77998 -11.44607 -11.39199 -11.21697 -10.96898 -10.79623 -10.63819 -10.29897 -10.14669 -9.83312 -9.79337 -9.56845 -9.01927 -8.89655 -8.46403 -8.33525 -7.73414 -6.09647 -4.19133 0.83057 1.30313 3.11501 3.26723 3.32189 3.32956 3.36186 3.94716 4.17777 4.22470 4.41495 4.64273 4.93563 5.06410 5.06832 5.16364 5.19745 5.21610 5.36862 5.37658 5.40574 5.57791 5.70288 5.81703 5.90793 5.93086 6.09297 6.16783 6.41715 6.44905 6.52730 6.72425 7.10307 7.25391 7.39984 7.42391 7.50774 7.65255 7.75314 7.85408 7.94730 8.21716 8.71085 8.81581 9.19922 9.48341 10.95631 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.004365 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.300863 B = 6413.493536 C = 7477.960317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.264 6.264 4 C 0.373 3.627 5 N -0.550 5.550 6 C 0.179 3.821 7 C -0.105 4.105 8 C -0.222 4.222 9 C -0.010 4.010 10 C -0.202 4.202 11 C 0.548 3.452 12 O -0.522 6.522 13 N -0.706 5.706 14 C 0.272 3.728 15 H 0.050 0.950 16 C -0.535 4.535 17 H 0.060 0.940 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.901 3.099 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.127 4.127 25 C -0.137 4.137 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.384 0.616 37 H 0.265 0.735 38 H 0.099 0.901 39 H 0.030 0.970 40 H 0.050 0.950 41 H 0.021 0.979 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.987 -16.964 -1.561 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.168 6.168 4 C 0.193 3.807 5 N -0.275 5.275 6 C 0.041 3.959 7 C -0.162 4.162 8 C -0.242 4.242 9 C -0.036 4.036 10 C -0.209 4.209 11 C 0.332 3.668 12 O -0.400 6.400 13 N -0.355 5.355 14 C 0.171 3.829 15 H 0.068 0.932 16 C -0.573 4.573 17 H 0.078 0.922 18 C -0.136 4.136 19 N -0.519 5.519 20 Si 0.728 3.272 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.166 4.166 25 C -0.194 4.194 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.217 0.783 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.290 -17.520 -1.571 18.681 hybrid contribution 1.430 1.505 0.347 2.105 sum 7.720 -16.015 -1.223 17.821 Atomic orbital electron populations 1.21777 0.92947 1.02199 1.03943 1.22629 0.95167 0.81701 1.01860 1.86592 1.15469 1.29181 1.85585 1.19786 0.84463 0.88414 0.88068 1.67228 1.05935 1.32771 1.21607 1.21067 0.88865 0.95166 0.90767 1.20768 0.97927 0.94260 1.03245 1.21679 1.01310 0.92312 1.08910 1.21703 0.91474 0.99865 0.90529 1.20451 0.94488 0.93230 1.12695 1.17683 0.87776 0.82831 0.78491 1.90795 1.13962 1.85772 1.49481 1.46406 1.10338 1.06018 1.72697 1.18783 0.90113 0.80538 0.93481 0.93186 1.21192 1.00080 0.94565 1.41471 0.92198 1.24875 0.94894 0.98671 0.95166 1.69888 1.11093 1.25177 1.45735 0.86527 0.79416 0.81573 0.79673 1.20186 1.21145 1.20215 1.21936 0.98281 0.99553 0.96798 1.21837 1.00643 0.98969 0.97981 0.91417 0.91439 0.90746 0.91978 0.91966 0.90113 0.90444 0.90334 0.84284 0.83624 0.78290 0.92524 0.88296 0.95112 0.93094 0.95971 0.94247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 37.16 0.38 -1.39 16 2 C 0.06 0.84 6.03 37.16 0.22 1.07 16 3 O -0.26 -4.80 8.22 -39.76 -0.33 -5.12 16 4 C 0.37 6.48 7.51 -16.62 -0.12 6.36 16 5 N -0.55 -8.13 9.11 -9.21 -0.08 -8.21 16 6 C 0.18 2.14 6.78 -82.53 -0.56 1.58 16 7 C -0.10 -0.81 10.16 36.01 0.37 -0.45 16 8 C -0.22 -2.50 9.71 -39.50 -0.38 -2.88 16 9 C -0.01 -0.14 9.64 -38.89 -0.37 -0.51 16 10 C -0.20 -3.56 5.90 -104.69 -0.62 -4.18 16 11 C 0.55 11.68 6.34 -12.47 -0.08 11.60 16 12 O -0.52 -12.86 12.32 -16.48 -0.20 -13.06 16 13 N -0.71 -15.02 4.98 -55.97 -0.28 -15.30 16 14 C 0.27 6.93 2.24 -69.07 -0.15 6.78 16 15 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 16 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 19 N -0.88 -24.76 11.29 55.43 0.63 -24.13 16 20 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.13 -3.13 5.45 -26.72 -0.15 -3.28 16 25 C -0.14 -3.17 8.51 37.16 0.32 -2.85 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 30 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 34 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.15 1.67 6.52 -52.49 -0.34 1.33 16 36 H 0.38 7.01 6.64 -40.82 -0.27 6.74 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.10 2.68 5.95 -51.93 -0.31 2.38 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.04 0.90 5.64 -51.93 -0.29 0.61 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -31.96 344.90 -7.84 -39.80 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.20 Total: 6.14 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.55 Total: -0.86 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.26 Total: -47.65 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.53 Total: -18.18 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.96 -7.84 -39.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276885680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.909 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds