Wall clock time and date at job start Tue Mar 31 2020 06:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47196 * 2 1 4 4 C 1.35434 * 116.99888 * 179.97438 * 3 2 1 5 5 N 1.32229 * 119.79834 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.80177 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.40825 * 179.97438 * 6 5 4 8 8 C 1.38353 * 121.18321 * 0.27319 * 6 5 4 9 9 C 1.38340 * 119.45528 * 359.45688 * 8 6 5 10 10 C 1.39982 * 118.34940 * 0.52740 * 9 8 6 11 11 C 1.47531 * 120.59660 * 179.71351 * 10 9 8 12 12 O 1.21586 * 120.00164 * 180.02562 * 11 10 9 13 13 N 1.34781 * 119.99573 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99369 * 180.02562 * 13 11 10 15 15 H 1.08992 * 109.47050 * 34.99836 * 14 13 11 16 16 C 1.50703 * 109.46731 * 155.00451 * 14 13 11 17 17 H 1.08002 * 119.99853 * 359.97438 * 16 14 13 18 18 C 1.37877 * 119.99891 * 179.97438 * 16 14 13 19 19 N 1.31517 * 119.99799 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 119.99877 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47255 * 60.00125 * 20 18 16 22 22 H 1.48511 * 109.47149 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47426 * 299.99855 * 20 18 16 24 24 C 1.53007 * 109.46979 * 274.99663 * 14 13 11 25 25 C 1.53005 * 109.46684 * 65.00262 * 24 14 13 26 26 H 1.09003 * 109.46701 * 300.00024 * 1 2 3 27 27 H 1.09003 * 109.47112 * 59.99403 * 1 2 3 28 28 H 1.08998 * 109.47777 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46701 * 239.99976 * 2 1 3 30 30 H 1.08996 * 109.46757 * 120.00487 * 2 1 3 31 31 H 1.09002 * 109.47152 * 89.99927 * 7 6 5 32 32 H 1.09001 * 109.46980 * 330.00028 * 7 6 5 33 33 H 1.09004 * 109.47113 * 210.00009 * 7 6 5 34 34 H 1.08000 * 120.26943 * 179.72714 * 8 6 5 35 35 H 1.08002 * 120.82121 * 180.26677 * 9 8 6 36 36 H 0.96999 * 120.00030 * 0.02562 * 13 11 10 37 37 H 0.96998 * 119.99968 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.46739 * 185.00337 * 24 14 13 39 39 H 1.08996 * 109.47078 * 305.00452 * 24 14 13 40 40 H 1.09003 * 109.46841 * 60.00111 * 25 24 14 41 41 H 1.08997 * 109.46375 * 179.97438 * 25 24 14 42 42 H 1.08994 * 109.47028 * 299.99779 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4731 0.0005 6 6 5.4635 0.6001 0.0005 7 6 6.3264 -0.6355 0.0011 8 6 6.0626 1.8471 0.0062 9 6 5.2714 2.9820 0.0006 10 6 3.8807 2.8227 0.0005 11 6 2.9902 3.9989 0.0010 12 8 1.7837 3.8480 0.0014 13 7 3.5141 5.2407 0.0009 14 6 2.6297 6.4087 0.0019 15 1 1.7398 6.1901 0.5920 16 6 3.3537 7.5864 0.6021 17 1 4.3706 7.4757 0.9485 18 6 2.7178 8.8050 0.7089 19 7 1.4792 8.9396 0.2875 20 14 3.6149 10.2645 1.4534 21 1 4.8280 10.5621 0.6503 22 1 2.7185 11.4486 1.4544 23 1 4.0111 9.9432 2.8481 24 6 2.2205 6.7399 -1.4347 25 6 1.3785 5.5951 -2.0018 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 6.5345 -0.9338 -1.0264 32 1 5.8048 -1.4427 0.5153 33 1 7.2641 -0.4235 0.5149 34 1 7.1391 1.9339 0.0106 35 1 5.7158 3.9663 0.0005 36 1 4.4766 5.3610 0.0002 37 1 1.0319 9.7971 0.3624 38 1 1.6358 7.6598 -1.4431 39 1 3.1135 6.8713 -2.0457 40 1 0.4855 5.4636 -1.3908 41 1 1.0867 5.8312 -3.0251 42 1 1.9632 4.6753 -1.9934 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276885680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:00 Heat of formation + Delta-G solvation = -71.276199 kcal Electronic energy + Delta-G solvation = -23786.392264 eV Core-core repulsion = 20344.719624 eV Total energy + Delta-G solvation = -3441.672639 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.94976 -40.22292 -39.17503 -36.87364 -34.65755 -33.97907 -33.25736 -32.49136 -31.85136 -29.32538 -28.40240 -25.32653 -24.68666 -24.05803 -23.27957 -22.13261 -21.09976 -19.61518 -19.05261 -17.80063 -17.65401 -17.38852 -16.90393 -16.21643 -16.06170 -15.46665 -15.34153 -15.16877 -15.00855 -14.57085 -14.23092 -13.98259 -13.73359 -13.49872 -13.45428 -13.28438 -13.15491 -13.00941 -12.87982 -12.79025 -12.63698 -12.44551 -12.17953 -12.06298 -11.67422 -11.59025 -11.09224 -10.97724 -10.90657 -10.55329 -10.44255 -9.67524 -9.37171 -8.14128 -6.31983 -0.30264 0.24818 1.46132 1.48402 1.56020 2.02608 2.02949 2.35231 2.58575 2.83585 3.14921 3.17833 3.73643 3.85389 3.95375 4.03986 4.13781 4.27376 4.36336 4.42602 4.48662 4.56207 4.71759 4.76230 4.79549 4.84226 4.89601 4.96171 5.03037 5.08030 5.17734 5.18928 5.25793 5.44292 5.52610 5.56254 5.63279 5.79909 5.94292 6.17340 6.29232 6.74240 6.75849 7.01377 7.34874 7.59903 8.91283 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.004365 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.300863 B = 6413.493536 C = 7477.960317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 O -0.300 6.300 4 C 0.355 3.645 5 N -0.557 5.557 6 C 0.179 3.821 7 C -0.102 4.102 8 C -0.207 4.207 9 C -0.005 4.005 10 C -0.239 4.239 11 C 0.546 3.454 12 O -0.567 6.567 13 N -0.701 5.701 14 C 0.281 3.719 15 H -0.004 1.004 16 C -0.549 4.549 17 H 0.073 0.927 18 C 0.016 3.984 19 N -0.916 5.916 20 Si 0.972 3.028 21 H -0.262 1.262 22 H -0.287 1.287 23 H -0.272 1.272 24 C -0.119 4.119 25 C -0.121 4.121 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.186 0.814 35 H 0.166 0.834 36 H 0.400 0.600 37 H 0.265 0.735 38 H 0.074 0.926 39 H 0.042 0.958 40 H 0.024 0.976 41 H 0.045 0.955 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.635 -18.159 -1.646 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.016 4.016 3 O -0.206 6.206 4 C 0.175 3.825 5 N -0.283 5.283 6 C 0.042 3.958 7 C -0.159 4.159 8 C -0.227 4.227 9 C -0.030 4.030 10 C -0.246 4.246 11 C 0.333 3.667 12 O -0.448 6.448 13 N -0.351 5.351 14 C 0.177 3.823 15 H 0.014 0.986 16 C -0.587 4.587 17 H 0.092 0.908 18 C -0.184 4.184 19 N -0.554 5.554 20 Si 0.796 3.204 21 H -0.187 1.187 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.158 4.158 25 C -0.179 4.179 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.128 0.872 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.203 0.797 35 H 0.183 0.817 36 H 0.236 0.764 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.982 -18.741 -1.659 21.298 hybrid contribution 0.363 1.718 0.380 1.797 sum 10.345 -17.023 -1.279 19.961 Atomic orbital electron populations 1.21810 0.91918 1.04062 1.02597 1.22845 0.96006 0.80314 1.02463 1.86554 1.16586 1.31544 1.85867 1.19957 0.84577 0.89031 0.88909 1.67346 1.07207 1.31640 1.22138 1.22004 0.88283 0.97467 0.88091 1.20935 0.98152 0.92079 1.04717 1.22166 1.03270 0.90865 1.06351 1.21994 0.89805 1.01904 0.89347 1.20198 0.95670 0.91597 1.17110 1.18261 0.87848 0.83623 0.76976 1.90760 1.16177 1.86479 1.51360 1.46115 1.10682 1.05225 1.73089 1.18370 0.89014 0.81883 0.92984 0.98605 1.21541 1.00700 0.94903 1.41552 0.90842 1.25785 0.95559 1.01633 0.95463 1.70053 1.12725 1.25789 1.46802 0.85405 0.78384 0.77641 0.78931 1.18685 1.21295 1.19711 1.21782 0.98440 0.98797 0.96775 1.21656 0.99230 0.98370 0.98621 0.92786 0.92687 0.87195 0.91195 0.91297 0.88390 0.90484 0.87285 0.79715 0.81704 0.76379 0.92612 0.90810 0.93941 0.95674 0.93619 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 10.28 71.98 0.74 -2.78 16 2 C 0.06 1.62 6.03 71.98 0.43 2.06 16 3 O -0.30 -11.44 8.22 -66.48 -0.55 -11.99 16 4 C 0.35 12.49 7.51 85.13 0.64 13.13 16 5 N -0.56 -15.76 9.11 -296.06 -2.70 -18.46 16 6 C 0.18 3.70 6.78 42.58 0.29 3.99 16 7 C -0.10 -1.12 10.16 71.24 0.72 -0.40 16 8 C -0.21 -3.81 9.71 22.32 0.22 -3.60 16 9 C -0.01 -0.13 9.64 22.72 0.22 0.09 16 10 C -0.24 -8.49 5.90 -19.91 -0.12 -8.61 16 11 C 0.55 24.25 6.34 86.69 0.55 24.80 16 12 O -0.57 -29.85 12.32 16.83 0.21 -29.64 16 13 N -0.70 -30.56 4.98 -449.26 -2.24 -32.80 16 14 C 0.28 14.87 2.24 44.25 0.10 14.97 16 15 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 16 C -0.55 -29.30 8.73 25.60 0.22 -29.08 16 17 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 18 C 0.02 0.85 5.29 84.65 0.45 1.30 16 19 N -0.92 -52.99 11.29 21.45 0.24 -52.75 16 20 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 22 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 C -0.12 -6.07 5.45 30.60 0.17 -5.90 16 25 C -0.12 -5.83 8.51 71.98 0.61 -5.22 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 30 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 0.60 8.07 -2.38 -0.02 0.58 16 34 H 0.19 1.73 8.06 -2.91 -0.02 1.70 16 35 H 0.17 3.33 6.52 -2.91 -0.02 3.31 16 36 H 0.40 14.44 6.64 -92.71 -0.62 13.83 16 37 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 38 H 0.07 4.16 5.95 -2.39 -0.01 4.15 16 39 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.02 1.29 7.84 -2.39 -0.02 1.27 16 41 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.04 1.83 5.64 -2.39 -0.01 1.82 16 Total: -1.00 -74.47 344.90 2.65 -71.82 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.41 Total: 24.95 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 5.24 Total: 4.76 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -4.69 Total: -104.01 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.34 Total: -41.63 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -74.47 2.65 -71.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276885680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.540 kcal (2) G-P(sol) polarization free energy of solvation -74.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds