Wall clock time and date at job start Tue Mar 31 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47349 * 2 1 4 4 C 1.35418 * 117.00397 * 179.97438 * 3 2 1 5 5 N 1.32242 * 119.79973 * 359.97438 * 4 3 2 6 6 C 1.31883 * 121.80042 * 180.02562 * 5 4 3 7 7 C 1.50699 * 119.40506 * 180.02562 * 6 5 4 8 8 C 1.38346 * 121.18607 * 0.02562 * 6 5 4 9 9 C 1.38344 * 119.46138 * 359.74201 * 8 6 5 10 10 C 1.39992 * 118.34239 * 0.49798 * 9 8 6 11 11 C 1.47526 * 120.59387 * 179.78101 * 10 9 8 12 12 O 1.21583 * 119.99970 * 179.72037 * 11 10 9 13 13 N 1.34785 * 119.99832 * 359.71631 * 11 10 9 14 14 C 1.46499 * 119.99572 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.47615 * 325.00219 * 14 13 11 16 16 C 1.50699 * 109.46920 * 205.00019 * 14 13 11 17 17 H 1.08004 * 120.00307 * 0.02562 * 16 14 13 18 18 C 1.37884 * 119.99822 * 180.02562 * 16 14 13 19 19 N 1.31514 * 120.00109 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99874 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46867 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46968 * 119.99877 * 20 18 16 23 23 H 1.48491 * 109.47133 * 239.99928 * 20 18 16 24 24 C 1.53006 * 109.46679 * 85.00499 * 14 13 11 25 25 C 1.52997 * 109.47127 * 294.99474 * 24 14 13 26 26 H 1.08994 * 109.47302 * 299.99854 * 1 2 3 27 27 H 1.09000 * 109.47141 * 60.00411 * 1 2 3 28 28 H 1.09004 * 109.46818 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47014 * 239.99580 * 2 1 3 30 30 H 1.09002 * 109.47067 * 120.00549 * 2 1 3 31 31 H 1.08996 * 109.47438 * 89.99776 * 7 6 5 32 32 H 1.09001 * 109.47114 * 210.00474 * 7 6 5 33 33 H 1.09001 * 109.46995 * 330.00131 * 7 6 5 34 34 H 1.08003 * 120.27054 * 179.97438 * 8 6 5 35 35 H 1.07993 * 120.82930 * 180.25344 * 9 8 6 36 36 H 0.96999 * 120.00153 * 0.02562 * 13 11 10 37 37 H 0.96997 * 119.99669 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.46505 * 174.99345 * 24 14 13 39 39 H 1.08996 * 109.46884 * 55.00226 * 24 14 13 40 40 H 1.09002 * 109.47153 * 180.02562 * 25 24 14 41 41 H 1.09001 * 109.46832 * 60.00321 * 25 24 14 42 42 H 1.09004 * 109.47261 * 300.00303 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1508 0.4732 0.0015 6 6 5.4635 0.6003 0.0026 7 6 6.3265 -0.6352 0.0031 8 6 6.0625 1.8473 0.0032 9 6 5.2714 2.9822 -0.0027 10 6 3.8805 2.8228 0.0016 11 6 2.9900 3.9989 0.0005 12 8 1.7836 3.8480 -0.0009 13 7 3.5138 5.2408 0.0011 14 6 2.6294 6.4088 -0.0006 15 1 1.7399 6.1902 -0.5914 16 6 3.3537 7.5864 -0.6001 17 1 4.3710 7.4759 -0.9457 18 6 2.7177 8.8051 -0.7073 19 7 1.4792 8.9399 -0.2860 20 14 3.6154 10.2648 -1.4511 21 1 4.9871 9.8541 -1.8448 22 1 2.8786 10.7407 -2.6494 23 1 3.6938 11.3596 -0.4510 24 6 2.2191 6.7397 1.4358 25 6 1.3767 5.5950 2.0022 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 6.5354 -0.9330 -1.0243 32 1 7.2637 -0.4235 0.5178 33 1 5.8045 -1.4427 0.5164 34 1 7.1391 1.9342 0.0045 35 1 5.7156 3.9665 -0.0064 36 1 4.4763 5.3613 0.0019 37 1 1.0318 9.7971 -0.3619 38 1 1.6344 7.6596 1.4438 39 1 3.1116 6.8713 2.0474 40 1 1.0840 5.8309 3.0253 41 1 1.9614 4.6751 1.9941 42 1 0.4841 5.4635 1.3904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276885683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:03 Heat of formation + Delta-G solvation = -49.801418 kcal Electronic energy + Delta-G solvation = -23785.689054 eV Core-core repulsion = 20344.947631 eV Total energy + Delta-G solvation = -3440.741423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.76976 -38.57847 -38.04159 -34.96880 -33.29680 -32.41300 -31.99618 -30.88766 -30.68743 -27.98958 -26.75456 -23.89700 -23.32138 -22.64452 -22.19665 -20.47401 -19.27600 -18.30580 -17.55147 -16.58147 -16.22819 -15.85486 -15.12312 -14.59013 -14.54382 -14.36073 -14.15723 -13.93772 -13.70975 -13.07959 -12.84792 -12.64831 -12.57548 -12.45298 -12.20207 -12.06357 -11.77529 -11.45199 -11.39498 -11.23004 -10.93814 -10.81927 -10.63880 -10.28255 -10.15231 -9.82924 -9.79683 -9.56821 -9.00465 -8.89802 -8.47225 -8.33505 -7.73415 -6.10222 -4.19461 0.83070 1.30302 3.11468 3.24625 3.32439 3.34648 3.36291 3.94748 4.17634 4.22520 4.41248 4.64304 4.93585 5.06398 5.06773 5.16384 5.19714 5.21313 5.36879 5.37676 5.40519 5.57782 5.70242 5.81715 5.90767 5.93093 6.09307 6.16770 6.41730 6.44846 6.52666 6.72412 7.10256 7.25358 7.39989 7.42381 7.50733 7.65430 7.75225 7.85318 7.94607 8.21555 8.71116 8.81655 9.19906 9.48156 10.95132 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.004365 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.251369 B = 6413.589936 C = 7478.024104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.264 6.264 4 C 0.373 3.627 5 N -0.550 5.550 6 C 0.179 3.821 7 C -0.105 4.105 8 C -0.222 4.222 9 C -0.010 4.010 10 C -0.202 4.202 11 C 0.548 3.452 12 O -0.522 6.522 13 N -0.706 5.706 14 C 0.272 3.728 15 H 0.050 0.950 16 C -0.533 4.533 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.881 5.881 20 Si 0.900 3.100 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.127 4.127 25 C -0.137 4.137 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.384 0.616 37 H 0.264 0.736 38 H 0.099 0.901 39 H 0.030 0.970 40 H 0.021 0.979 41 H 0.039 0.961 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.006 -16.988 1.525 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.168 6.168 4 C 0.193 3.807 5 N -0.275 5.275 6 C 0.041 3.959 7 C -0.162 4.162 8 C -0.242 4.242 9 C -0.036 4.036 10 C -0.209 4.209 11 C 0.332 3.668 12 O -0.400 6.400 13 N -0.355 5.355 14 C 0.170 3.830 15 H 0.068 0.932 16 C -0.572 4.572 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.519 5.519 20 Si 0.728 3.272 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.166 4.166 25 C -0.194 4.194 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.217 0.783 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.049 0.951 40 H 0.040 0.960 41 H 0.058 0.942 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.318 -17.549 1.536 18.714 hybrid contribution 1.407 1.514 -0.366 2.099 sum 7.725 -16.035 1.171 17.837 Atomic orbital electron populations 1.21776 0.92946 1.02200 1.03942 1.22632 0.95166 0.81696 1.01863 1.86589 1.15473 1.29186 1.85577 1.19786 0.84462 0.88415 0.88064 1.67234 1.05932 1.32767 1.21615 1.21064 0.88866 0.95164 0.90762 1.20765 0.97921 0.94257 1.03258 1.21678 1.01312 0.92312 1.08916 1.21706 0.91472 0.99865 0.90520 1.20451 0.94488 0.93226 1.12709 1.17682 0.87775 0.82831 0.78490 1.90794 1.13967 1.85771 1.49479 1.46404 1.10340 1.06014 1.72701 1.18793 0.90124 0.80572 0.93498 0.93183 1.21269 1.00089 0.94521 1.41292 0.92088 1.24883 0.94898 0.98693 0.95180 1.69908 1.11119 1.25000 1.45849 0.86415 0.79700 0.82227 0.78874 1.19769 1.20908 1.20895 1.21933 0.98285 0.99558 0.96792 1.21837 1.00638 0.98969 0.97984 0.91437 0.91417 0.90746 0.91965 0.91976 0.90100 0.90338 0.90452 0.84284 0.83622 0.78285 0.92641 0.88292 0.95109 0.95969 0.94245 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 37.16 0.38 -1.39 16 2 C 0.06 0.84 6.03 37.16 0.22 1.07 16 3 O -0.26 -4.79 8.22 -39.72 -0.33 -5.12 16 4 C 0.37 6.48 7.51 -16.61 -0.12 6.35 16 5 N -0.55 -8.13 9.11 -9.21 -0.08 -8.21 16 6 C 0.18 2.14 6.78 -82.53 -0.56 1.59 16 7 C -0.10 -0.81 10.16 36.01 0.37 -0.45 16 8 C -0.22 -2.50 9.71 -39.50 -0.38 -2.88 16 9 C -0.01 -0.13 9.64 -38.89 -0.37 -0.51 16 10 C -0.20 -3.56 5.90 -104.69 -0.62 -4.18 16 11 C 0.55 11.68 6.34 -12.47 -0.08 11.60 16 12 O -0.52 -12.85 12.32 -16.48 -0.20 -13.06 16 13 N -0.71 -15.02 4.98 -55.98 -0.28 -15.30 16 14 C 0.27 6.91 2.24 -69.08 -0.15 6.76 16 15 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 16 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 19 N -0.88 -24.74 11.29 55.43 0.63 -24.11 16 20 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 25 C -0.14 -3.17 8.51 37.16 0.32 -2.85 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.79 8.11 -51.92 -0.42 0.37 16 30 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.15 1.67 6.51 -52.49 -0.34 1.33 16 36 H 0.38 7.01 6.64 -40.82 -0.27 6.74 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.04 0.90 5.64 -51.93 -0.29 0.61 16 42 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -32.00 344.90 -7.84 -39.83 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.20 Total: 6.08 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.55 Total: -0.86 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.26 Total: -47.63 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.53 Total: -18.18 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.00 -7.84 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276885683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.967 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds